Clone Name | bah63c24 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466605.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2494 Score = 238 bits (120), Expect = 2e-59 Identities = 282/336 (83%) Strand = Plus / Plus Query: 194 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 253 ||||||||||||||||| |||||||| || ||||| || | |||| |||||| || || Sbjct: 156 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 215 Query: 254 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 313 ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || Sbjct: 216 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 275 Query: 314 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 373 ||| |||| || |||||||||||| ||| |||| ||||||||||||||| | |||||| Sbjct: 276 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 335 Query: 374 accatggagctcgagccggcctccgaaggaagcccacttctagttcccaggcagaagtac 433 ||||||||||||||||| | || ||||||||||||||| ||||||||||||| ||||| Sbjct: 336 accatggagctcgagccatcttcagaaggaagcccacttttagttcccaggcaaaagtat 395 Query: 434 tgcgaatctatacaccagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtg 493 || ||||||||| | ||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct: 396 tgtgaatctatatatgagacaaggaggagaaaaacccgcactgtgatggttgggaatgtg 455 Query: 494 gcactcggcagtgatcaccccatgaggattcagact 529 |||| ||||||||||| ||||| |||||||||||| Sbjct: 456 ccacttggcagtgatcatcccattaggattcagact 491
>ref|XM_506856.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1669_F01.30 mRNA Length = 2675 Score = 238 bits (120), Expect = 2e-59 Identities = 282/336 (83%) Strand = Plus / Plus Query: 194 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 253 ||||||||||||||||| |||||||| || ||||| || | |||| |||||| || || Sbjct: 149 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 208 Query: 254 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 313 ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || Sbjct: 209 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 268 Query: 314 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 373 ||| |||| || |||||||||||| ||| |||| ||||||||||||||| | |||||| Sbjct: 269 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 328 Query: 374 accatggagctcgagccggcctccgaaggaagcccacttctagttcccaggcagaagtac 433 ||||||||||||||||| | || ||||||||||||||| ||||||||||||| ||||| Sbjct: 329 accatggagctcgagccatcttcagaaggaagcccacttttagttcccaggcaaaagtat 388 Query: 434 tgcgaatctatacaccagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtg 493 || ||||||||| | ||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct: 389 tgtgaatctatatatgagacaaggaggagaaaaacccgcactgtgatggttgggaatgtg 448 Query: 494 gcactcggcagtgatcaccccatgaggattcagact 529 |||| ||||||||||| ||||| |||||||||||| Sbjct: 449 ccacttggcagtgatcatcccattaggattcagact 484
>dbj|AK120769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D09, full insert sequence Length = 2675 Score = 238 bits (120), Expect = 2e-59 Identities = 282/336 (83%) Strand = Plus / Plus Query: 194 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 253 ||||||||||||||||| |||||||| || ||||| || | |||| |||||| || || Sbjct: 149 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 208 Query: 254 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 313 ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || Sbjct: 209 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 268 Query: 314 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 373 ||| |||| || |||||||||||| ||| |||| ||||||||||||||| | |||||| Sbjct: 269 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 328 Query: 374 accatggagctcgagccggcctccgaaggaagcccacttctagttcccaggcagaagtac 433 ||||||||||||||||| | || ||||||||||||||| ||||||||||||| ||||| Sbjct: 329 accatggagctcgagccatcttcagaaggaagcccacttttagttcccaggcaaaagtat 388 Query: 434 tgcgaatctatacaccagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtg 493 || ||||||||| | ||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct: 389 tgtgaatctatatatgagacaaggaggagaaaaacccgcactgtgatggttgggaatgtg 448 Query: 494 gcactcggcagtgatcaccccatgaggattcagact 529 |||| ||||||||||| ||||| |||||||||||| Sbjct: 449 ccacttggcagtgatcatcccattaggattcagact 484
>dbj|AK105762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D08, full insert sequence Length = 2494 Score = 238 bits (120), Expect = 2e-59 Identities = 282/336 (83%) Strand = Plus / Plus Query: 194 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 253 ||||||||||||||||| |||||||| || ||||| || | |||| |||||| || || Sbjct: 156 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 215 Query: 254 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 313 ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || Sbjct: 216 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 275 Query: 314 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 373 ||| |||| || |||||||||||| ||| |||| ||||||||||||||| | |||||| Sbjct: 276 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 335 Query: 374 accatggagctcgagccggcctccgaaggaagcccacttctagttcccaggcagaagtac 433 ||||||||||||||||| | || ||||||||||||||| ||||||||||||| ||||| Sbjct: 336 accatggagctcgagccatcttcagaaggaagcccacttttagttcccaggcaaaagtat 395 Query: 434 tgcgaatctatacaccagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtg 493 || ||||||||| | ||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct: 396 tgtgaatctatatatgagacaaggaggagaaaaacccgcactgtgatggttgggaatgtg 455 Query: 494 gcactcggcagtgatcaccccatgaggattcagact 529 |||| ||||||||||| ||||| |||||||||||| Sbjct: 456 ccacttggcagtgatcatcccattaggattcagact 491
>gb|AY562489.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) mRNA, complete cds Length = 2631 Score = 192 bits (97), Expect = 8e-46 Identities = 172/197 (87%) Strand = Plus / Plus Query: 329 agaggcagggcgctcgtggtcaagagctcaagtacagagtctgataccatggagctcgag 388 ||||||||||||||||||| |||||||| ||||| | || || ||||||||||||||| Sbjct: 337 agaggcagggcgctcgtggcgaagagctctagtactggctcggagaccatggagctcgag 396 Query: 389 ccggcctccgaaggaagcccacttctagttcccaggcagaagtactgcgaatctatacac 448 || | || ||||||||||||||| |||| ||||||||||||||||| ||||| | |||| Sbjct: 397 ccatcttcagaaggaagcccacttttagtacccaggcagaagtactgtgaatcaacacac 456 Query: 449 cagacaaggaggaggaaaacacgcactgtgatggtcgggaacgtggcactcggcagtgat 508 |||||||||||||||||||| || ||||||||||| ||||| ||| |||| ||||||||| Sbjct: 457 cagacaaggaggaggaaaactcgaactgtgatggtggggaatgtgccacttggcagtgat 516 Query: 509 caccccatgaggattca 525 || ||||| |||||||| Sbjct: 517 catcccataaggattca 533 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 134 acggtgctgcgaggtgtttgtaggat 159 |||| ||||||||||||||||||||| Sbjct: 142 acggagctgcgaggtgtttgtaggat 167
>gb|AY562488.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) gene, complete cds Length = 6353 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Plus Query: 419 cccaggcagaagtactgcgaatctatacaccagacaaggaggaggaaaacacgcactgtg 478 ||||||||||||||||| ||||| | |||||||||||||||||||||||| || |||||| Sbjct: 1187 cccaggcagaagtactgtgaatcaacacaccagacaaggaggaggaaaactcgaactgtg 1246 Query: 479 atggtcgggaacgtggcactcggcagtgatcaccccatgaggattca 525 ||||| ||||| ||| |||| ||||||||||| ||||| |||||||| Sbjct: 1247 atggtggggaatgtgccacttggcagtgatcatcccataaggattca 1293 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 329 agaggcagggcgctcgtggtcaagagctcaagtacagagtctgataccatggagctcgag 388 ||||||||||||||||||| |||||||| ||||| | || || ||||||||||||||| Sbjct: 977 agaggcagggcgctcgtggcgaagagctctagtactggctcggagaccatggagctcgag 1036 Query: 389 ccggcctccgaaggaagcccactt 412 || | || ||||||||||||||| Sbjct: 1037 ccatcttcagaaggaagcccactt 1060
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 125 bits (63), Expect = 2e-25 Identities = 180/219 (82%) Strand = Plus / Minus Query: 194 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 253 ||||||||||||||||| |||||||| || ||||| || | |||| |||||| || || Sbjct: 23677605 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 23677546 Query: 254 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 313 ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || Sbjct: 23677545 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 23677486 Query: 314 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 373 ||| |||| || |||||||||||| ||| |||| ||||||||||||||| | |||||| Sbjct: 23677485 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 23677426 Query: 374 accatggagctcgagccggcctccgaaggaagcccactt 412 ||||||||||||||||| | || ||||||||||||||| Sbjct: 23677425 accatggagctcgagccatcttcagaaggaagcccactt 23677387 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 414 tagttcccaggcagaagtactgcgaatctatacaccagacaaggaggaggaaaacacgca 473 ||||||||||||| ||||| || ||||||||| | ||||||||||||| ||||| |||| Sbjct: 23677254 tagttcccaggcaaaagtattgtgaatctatatatgagacaaggaggagaaaaacccgca 23677195 Query: 474 ctgtgatggtcgggaacgtggcactcggcagtgatcaccccatgaggattcagact 529 |||||||||| ||||| ||| |||| ||||||||||| ||||| |||||||||||| Sbjct: 23677194 ctgtgatggttgggaatgtgccacttggcagtgatcatcccattaggattcagact 23677139
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 125 bits (63), Expect = 2e-25 Identities = 180/219 (82%) Strand = Plus / Minus Query: 194 atagccatggccaccggggtggcaccggctccgcttccgtacgtcaaggtccgcgacgga 253 ||||||||||||||||| |||||||| || ||||| || | |||| |||||| || || Sbjct: 118705 atagccatggccaccggagtggcaccagcgccgctcccacatgtcagggtccgtgatggt 118646 Query: 254 ggcgtcggctacaccaagagcgtcgacttcgccaagatcctctccgttcccggtgcgctg 313 ||| |||||| ||| | |||||||||||| || |||||| | || ||||| | | | || Sbjct: 118645 ggcatcggcttcacgaggagcgtcgactttgctaagatcttgtcggttcctgctactcta 118586 Query: 314 aggatggggtccgcaagaggcagggcgctcgtggtcaagagctcaagtacagagtctgat 373 ||| |||| || |||||||||||| ||| |||| ||||||||||||||| | |||||| Sbjct: 118585 agggtgggctcatcaagaggcagggtgcttgtggccaagagctcaagtaccggttctgat 118526 Query: 374 accatggagctcgagccggcctccgaaggaagcccactt 412 ||||||||||||||||| | || ||||||||||||||| Sbjct: 118525 accatggagctcgagccatcttcagaaggaagcccactt 118487 Score = 119 bits (60), Expect = 1e-23 Identities = 102/116 (87%) Strand = Plus / Minus Query: 414 tagttcccaggcagaagtactgcgaatctatacaccagacaaggaggaggaaaacacgca 473 ||||||||||||| ||||| || ||||||||| | ||||||||||||| ||||| |||| Sbjct: 118354 tagttcccaggcaaaagtattgtgaatctatatatgagacaaggaggagaaaaacccgca 118295 Query: 474 ctgtgatggtcgggaacgtggcactcggcagtgatcaccccatgaggattcagact 529 |||||||||| ||||| ||| |||| ||||||||||| ||||| |||||||||||| Sbjct: 118294 ctgtgatggttgggaatgtgccacttggcagtgatcatcccattaggattcagact 118239
>ref|XM_752536.1| Ustilago maydis 521 hypothetical protein (UM01482.1) partial mRNA Length = 3066 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 372 ataccatggagctcgagccggcc 394 ||||||||||||||||||||||| Sbjct: 1949 ataccatggagctcgagccggcc 1971
>ref|XM_415558.1| PREDICTED: Gallus gallus similar to phosphohistidine phosphatase 1; 1700008C22Rik; sex-regulated protein janus-a (LOC417285), mRNA Length = 1129 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 123 ggcgccgcgggacggtgctgcgagg 147 ||||||||||||||| ||||||||| Sbjct: 295 ggcgccgcgggacggggctgcgagg 319
>gb|BT014629.1| Lycopersicon esculentum clone 134132R, mRNA sequence Length = 2527 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 471 gcactgtgatggtcgggaacgtggc 495 ||||||||||||| ||||||||||| Sbjct: 312 gcactgtgatggttgggaacgtggc 336
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 ttcgaagcttgggcataggca 194 ||||||||||||||||||||| Sbjct: 2255341 ttcgaagcttgggcataggca 2255321
>gb|AF435086.1| Lycopersicon esculentum GcpE mRNA, complete cds Length = 2373 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 471 gcactgtgatggtcgggaacgtggc 495 ||||||||||||| ||||||||||| Sbjct: 334 gcactgtgatggttgggaacgtggc 358
>gb|AY515283.1| Pseudemys concinna haplotype 79 cytochrome b-like (cytb) gene, partial sequence; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial Length = 1310 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ttgtaggattgcgtaggcga 170 |||||||||||||||||||| Sbjct: 312 ttgtaggattgcgtaggcga 293
>gb|AY515281.1| Pseudemys concinna haplotype 87 cytochrome b-like (cytb) gene, partial sequence; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial Length = 1318 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ttgtaggattgcgtaggcga 170 |||||||||||||||||||| Sbjct: 310 ttgtaggattgcgtaggcga 291
>ref|NM_101931.2| Arabidopsis thaliana unknown protein AT1G20790 mRNA, complete cds Length = 1308 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 ggcataggcatagccatggc 204 |||||||||||||||||||| Sbjct: 1181 ggcataggcatagccatggc 1162 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tgggcataggcatagccatggcca 206 ||||||||||||||| |||||||| Sbjct: 1159 tgggcataggcataggcatggcca 1136
>emb|AL929089.5| Mouse DNA sequence from clone RP24-402O2 on chromosome 11 Contains a novel gene (1700106J16Rik), complete sequence Length = 71354 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 ggccaccggggtggcaccggctcc 225 |||||||||| ||||||||||||| Sbjct: 35165 ggccaccgggctggcaccggctcc 35142
>gb|AF258877.1| Deirochelys reticularia cytochrome b gene, complete cds; mitochondrial gene for mitochondrial product Length = 1190 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ttgtaggattgcgtaggcga 170 |||||||||||||||||||| Sbjct: 849 ttgtaggattgcgtaggcga 830
>gb|AC007665.24| Mus musculus strain RIII Fibroblast cell line C127 chromosome 18 clone mgsriii-p1_3084, complete sequence Length = 85548 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 ccagacaaggaggaggaaaa 467 |||||||||||||||||||| Sbjct: 83262 ccagacaaggaggaggaaaa 83243
>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence Length = 143879 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tgggcataggcatagccatggcca 206 ||||||||||||||| |||||||| Sbjct: 111567 tgggcataggcataggcatggcca 111590 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ggcataggcatagccatggc 204 |||||||||||||||||||| Sbjct: 111545 ggcataggcatagccatggc 111564
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ttccccgcgtcgctgccgtcggct 87 |||| ||||||||||||||||||| Sbjct: 4022326 ttccgcgcgtcgctgccgtcggct 4022303
>dbj|AP006424.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT13E04, TM0314, complete sequence Length = 126349 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tgggcataggcatagccatg 202 |||||||||||||||||||| Sbjct: 102218 tgggcataggcatagccatg 102237 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,100,792 Number of Sequences: 3902068 Number of extensions: 3100792 Number of successful extensions: 55780 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55629 Number of HSP's gapped (non-prelim): 145 length of query: 529 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 506 effective length of database: 17,143,297,704 effective search space: 8674508638224 effective search space used: 8674508638224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)