ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62n24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473348.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 996 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 280 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 339 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 278 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 337 Query: 340 acacgcgcgtggtgaa 355 |||||||||||||||| Sbjct: 338 acacgcgcgtggtgaa 353 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Plus Query: 32 ccccttcgccgccggcgactgctccgccgataagttcgaccccgactacctctactttct 91 |||||||||||||||||| | | ||||||| || |||||||||||||||||||||| || Sbjct: 9 ccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttcct 68 Query: 92 ccgccaccttcgcaccgagggcagctcctatgtcctcgagctccc 136 ||||||| | ||| |||| ||| |||||| |||||||||||| Sbjct: 69 ccgccacatccgccccgatggcgactcctacaccctcgagctccc 113 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Plus Query: 193 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 252 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 176 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 235 Query: 253 aagagagggactcgtccgtggagg 276 | |||| ||| ||||| ||||||| Sbjct: 236 aggagaaggagtcgtcggtggagg 259
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 280 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 339 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 22960 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 22901 Query: 340 acacgcgcgtggtgaa 355 |||||||||||||||| Sbjct: 22900 acacgcgcgtggtgaa 22885 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 32 ccccttcgccgccggcgactgctccgccgataagttcgaccccgactacctctactttct 91 |||||||||||||||||| | | ||||||| || |||||||||||||||||||||| || Sbjct: 23229 ccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttcct 23170 Query: 92 ccgccaccttcgcaccgagggcagctcctatgtcctcgagctccc 136 ||||||| | ||| |||| ||| |||||| |||||||||||| Sbjct: 23169 ccgccacatccgccccgatggcgactcctacaccctcgagctccc 23125 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Minus Query: 193 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 252 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 23062 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 23003 Query: 253 aagagagggactcgtccgtggagg 276 | |||| ||| ||||| ||||||| Sbjct: 23002 aggagaaggagtcgtcggtggagg 22979
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 280 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 339 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 26955260 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 26955201 Query: 340 acacgcgcgtggtgaa 355 |||||||||||||||| Sbjct: 26955200 acacgcgcgtggtgaa 26955185 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 32 ccccttcgccgccggcgactgctccgccgataagttcgaccccgactacctctactttct 91 |||||||||||||||||| | | ||||||| || |||||||||||||||||||||| || Sbjct: 26955529 ccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttcct 26955470 Query: 92 ccgccaccttcgcaccgagggcagctcctatgtcctcgagctccc 136 ||||||| | ||| |||| ||| |||||| |||||||||||| Sbjct: 26955469 ccgccacatccgccccgatggcgactcctacaccctcgagctccc 26955425 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Minus Query: 193 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 252 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 26955362 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 26955303 Query: 253 aagagagggactcgtccgtggagg 276 | |||| ||| ||||| ||||||| Sbjct: 26955302 aggagaaggagtcgtcggtggagg 26955279
>dbj|AK100828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123A18, full insert sequence Length = 917 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 280 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 339 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 340 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 399 Query: 340 acacgcgcgtggtgaa 355 |||||||||||||||| Sbjct: 400 acacgcgcgtggtgaa 415 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 32 ccccttcgccgccggcgactgctccgccgataagttcgaccccgactacctctactttct 91 |||||||||||||||||| | | ||||||| || |||||||||||||||||||||| || Sbjct: 71 ccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttcct 130 Query: 92 ccgccaccttcgcaccgagggcagctcctatgtcctcgagctccc 136 | ||||| | ||| |||| ||| |||||| |||||||||||| Sbjct: 131 cagccacatccgccccgatggcgactcctacaccctcgagctccc 175 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Plus Query: 193 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 252 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 238 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 297 Query: 253 aagagagggactcgtccgtggagg 276 | |||| ||| ||||| ||||||| Sbjct: 298 aggagaaggagtcgtcggtggagg 321
>dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L03, full insert sequence Length = 1351 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 280 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 339 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 340 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 399 Query: 340 acacgcgcgtggtgaa 355 |||||||||||||||| Sbjct: 400 acacgcgcgtggtgaa 415 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Plus Query: 32 ccccttcgccgccggcgactgctccgccgataagttcgaccccgactacctctactttct 91 |||||||||||||||||| | | ||||||| || |||||||||||||||||||||| || Sbjct: 71 ccccttcgccgccggcgattaccccgccgaccaggtcgaccccgactacctctacttcct 130 Query: 92 ccgccaccttcgcaccgagggcagctcctatgtcctcgagctccc 136 ||||||| | ||| |||| ||| |||||| |||||||||||| Sbjct: 131 ccgccacatccgccccgatggcgactcctacaccctcgagctccc 175 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Plus Query: 193 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 252 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 238 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 297 Query: 253 aagagagggactcgtccgtggagg 276 | |||| ||| ||||| ||||||| Sbjct: 298 aggagaaggagtcgtcggtggagg 321
>gb|AY100481.1| Zea mays nucleosome/chromatin assembly factor group C (nfc101) mRNA, complete cds Length = 1788 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 tcgccgccggcgactgctccgc 58 |||||||||||||||||||||| Sbjct: 136 tcgccgccggcgactgctccgc 115
>gb|AY109354.1| Zea mays CL199_1 mRNA sequence Length = 2472 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 tcgccgccggcgactgctccgc 58 |||||||||||||||||||||| Sbjct: 762 tcgccgccggcgactgctccgc 741
>gb|AC166931.3| Mus musculus chromosome 8, clone wi1-2751F18, complete sequence Length = 44136 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 21579 atcgactccatcatcgacatggacg 21555
>ref|NM_023217.2| Mus musculus pyroglutamyl-peptidase I (Pgpep1), mRNA Length = 2151 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 385 atcgactccatcatcgacatggacg 409
>gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, complete sequence Length = 197906 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 3471 atcgactccatcatcgacatggacg 3447
>gb|BC051938.1| Mus musculus pyroglutamyl-peptidase I, mRNA (cDNA clone MGC:62180 IMAGE:5717365), complete cds Length = 2161 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 370 atcgactccatcatcgacatggacg 394
>gb|BC043041.1| Mus musculus RIKEN cDNA 2810003H13 gene, mRNA (cDNA clone IMAGE:5701330), partial cds Length = 2170 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 351 atcgactccatcatcgacatggacg 375
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 ccgccaccttcgcaccgagggcagc 116 |||||||||||| |||||||||||| Sbjct: 3333681 ccgccaccttcgaaccgagggcagc 3333657
>dbj|AK003373.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110003L05 product:PROBABLE PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3) (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I) (PGP-I) homolog [Mus musculus], full insert sequence Length = 941 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 385 atcgactccatcatcgacatggacg 409
>dbj|AK049632.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530009O03 product:PROBABLE PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3) (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I) (PGP-I) homolog [Mus musculus], full insert sequence Length = 2099 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 364 atcgactccatcatcgacatggacg 388
>dbj|AK012658.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810003H13 product:PROBABLE PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3) (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I) (PGP-I), full insert sequence Length = 1366 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 373 atcgactccatcatcgacatggacg 397
>dbj|AK047835.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130003F01 product:hypothetical Pyrrolidone-carboxylate/pyroglutamyl peptidase I (C15) family containing protein, full insert sequence Length = 2151 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 385 atcgactccatcatcgacatggacg 409
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 21 tccctctcctcccccttcgccgccggcga 49 |||| ||||||||||| |||||||||||| Sbjct: 17012579 tccccctcctccccctccgccgccggcga 17012607
>gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 BAC clone CIT987SK-334D11, complete sequence Length = 173882 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 gccatccctctcctcccccttcgcc 41 |||| |||||||||||||||||||| Sbjct: 145824 gccagccctctcctcccccttcgcc 145848
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 21 tccctctcctcccccttcgccgccggcga 49 |||| ||||||||||| |||||||||||| Sbjct: 142392 tccccctcctccccctccgccgccggcga 142420
>dbj|AP005655.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0025H07 Length = 145605 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 21 tccctctcctcccccttcgccgccggcga 49 |||| ||||||||||| |||||||||||| Sbjct: 6238 tccccctcctccccctccgccgccggcga 6266
>dbj|AK121117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074A22, full insert sequence Length = 2175 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 21 tccctctcctcccccttcgccgccggcga 49 |||| ||||||||||| |||||||||||| Sbjct: 299 tccccctcctccccctccgccgccggcga 271
>dbj|AK101045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005H20, full insert sequence Length = 2170 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 21 tccctctcctcccccttcgccgccggcga 49 |||| ||||||||||| |||||||||||| Sbjct: 294 tccccctcctccccctccgccgccggcga 266
>gb|AF039392.1|HSMUCRY1 Homo sapiens mu-crystallin gene, exons 1 and 2 Length = 1823 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 17 gccatccctctcctcccccttcgcc 41 |||| |||||||||||||||||||| Sbjct: 605 gccagccctctcctcccccttcgcc 581
>emb|AJ278829.1|MMU278829 Mus musculus mRNA for putative pyroglutamyl-peptidase I (PGPEP1 gene) Length = 1384 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 atcgactccatcgtcgacatggacg 315 |||||||||||| |||||||||||| Sbjct: 373 atcgactccatcatcgacatggacg 397
>ref|XM_550613.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1548 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 tctcctcccccttcgccgccggcg 48 |||||||| ||||||||||||||| Sbjct: 226 tctcctccgccttcgccgccggcg 203
>ref|XM_481064.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1800 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 ccttcgccgccggcgactgctccg 57 |||||||||||| ||||||||||| Sbjct: 510 ccttcgccgccgccgactgctccg 533
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 tctcctcccccttcgccgccggcg 48 |||||||| ||||||||||||||| Sbjct: 135775 tctcctccgccttcgccgccggcg 135752
>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0004E08, complete sequence Length = 158294 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cctcccccttcgccgccggc 47 |||||||||||||||||||| Sbjct: 147573 cctcccccttcgccgccggc 147554
>gb|AY437479.1| Leishmania major MP63 gene, complete cds Length = 1872 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 tctcctcccccttcgccgccggcg 48 |||| ||||||||||||||||||| Sbjct: 956 tctcttcccccttcgccgccggcg 979
>emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on chromosome X Contains the DXYS155E gene for DNA segment on chromosome X and Y (unique) 155 expressed sequence (XE7, XE7Y), the ASMT gene for acetylserotonin O-methyltransferase (ASMTY, HIOMT, HIOMTY), three novel genes and three CpG islands, complete sequence Length = 189825 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ccctctcctcccccttcgcc 41 |||||||||||||||||||| Sbjct: 6265 ccctctcctcccccttcgcc 6284
>emb|AL161913.11| Human DNA sequence from clone RP11-64P11 on chromosome 9, complete sequence Length = 137897 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aacccccgcgatgccatccc 24 |||||||||||||||||||| Sbjct: 98851 aacccccgcgatgccatccc 98832
>gb|AF413082.1|AF413082 Oryza sativa EPSP synthase mRNA, complete cds Length = 1585 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 tctcctcccccttcgccgccggcg 48 |||||||| ||||||||||||||| Sbjct: 226 tctcctccgccttcgccgccggcg 203
>gb|AF413081.1|AF413081 Oryza sativa 5-enolpyruvylshikimate 3-phosphate synthase gene, complete cds Length = 3661 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 tctcctcccccttcgccgccggcg 48 |||||||| ||||||||||||||| Sbjct: 583 tctcctccgccttcgccgccggcg 560
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cctcccccttcgccgccggc 47 |||||||||||||||||||| Sbjct: 3556444 cctcccccttcgccgccggc 3556425
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cctcccccttcgccgccggc 47 |||||||||||||||||||| Sbjct: 14161551 cctcccccttcgccgccggc 14161570
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgccgccggcgactgctccg 57 |||||||||||||||||||| Sbjct: 17604726 cgccgccggcgactgctccg 17604707 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 tctcctcccccttcgccgccggcg 48 |||||||| ||||||||||||||| Sbjct: 1815483 tctcctccgccttcgccgccggcg 1815460
>gb|AC091696.3| Felis catus clone RP86-117J4, complete sequence Length = 136083 Score = 40.1 bits (20), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 126 ctcgagctcccgcccggnggtgc 148 ||||||||||||||||| ||||| Sbjct: 41414 ctcgagctcccgcccgggggtgc 41392
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 tctcctcccccttcgccgccggcg 48 |||||||| ||||||||||||||| Sbjct: 15961 tctcctccgccttcgccgccggcg 15938
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 tctcctcccccttcgccgccggcg 48 |||||||| ||||||||||||||| Sbjct: 140632 tctcctccgccttcgccgccggcg 140609
>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0564B04 Length = 64684 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgccgccggcgactgctccg 57 |||||||||||||||||||| Sbjct: 31074 cgccgccggcgactgctccg 31055
>dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0067K15 Length = 160162 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cctcccccttcgccgccggc 47 |||||||||||||||||||| Sbjct: 46432 cctcccccttcgccgccggc 46451
>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full insert sequence Length = 3392 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gtggatcgactccatcgtcg 306 |||||||||||||||||||| Sbjct: 1886 gtggatcgactccatcgtcg 1905
>dbj|AK105826.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E02, full insert sequence Length = 1793 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 cgccgccggcgactgctccg 57 |||||||||||||||||||| Sbjct: 1320 cgccgccggcgactgctccg 1339
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cctcccccttcgccgccggc 47 |||||||||||||||||||| Sbjct: 3556365 cctcccccttcgccgccggc 3556346
>dbj|AB052962.1| Oryza sativa EPSPs, rps20 genes for 3-phosphoshikimate 1-carboxyvinyltransferase, 40S ribosomal protein S20, complete cds Length = 10601 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 tctcctcccccttcgccgccggcg 48 |||||||| ||||||||||||||| Sbjct: 3582 tctcctccgccttcgccgccggcg 3559 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,254,244 Number of Sequences: 3902068 Number of extensions: 2254244 Number of successful extensions: 53895 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53393 Number of HSP's gapped (non-prelim): 502 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
