>YR837_MIMIV (Q5UQI8) Putative ankyrin repeat protein R837|
          Length = 626

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 108 GAYLLSRNILAMSFAPRDSHEAQVQFALERGV 203
           GA + SRN  A+ FA ++ H   V+F +E+GV
Sbjct: 134 GANIKSRNNYALRFAVKNGHYNMVKFLIEQGV 165

>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1459

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 345 PGGYWILSGPPINWKKHSKGWQRTREDLNAEQQAIESVAKSLCWKKIKEVGDI 503
           P G W  +G  +  KK+SK     R   +AEQ+   +V ++L  ++I   GD+
Sbjct: 190 PNGLWGKTGKSVEAKKYSK-----RAAADAEQRLTAAVREALGAQRIVHTGDV 237

>ICAL_SHEEP (Q95208) Calpastatin (Calpain inhibitor)|
          Length = 723

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 242 GEPVGGEDPDHRRHPTFQRELHLRLVRVPRSERHGQDVA*QQIRSP 105
           G+P   E P H+R P  QR  +L++ R P +   G   A  Q++ P
Sbjct: 634 GKPKRSESPRHQRSPRHQR--NLQVPRTPLTPSQGTWTAVPQLQKP 677

>BIOC_ENTAG (O06898) Biotin synthesis protein bioC|
          Length = 251

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
 Frame = +3

Query: 72  TALDTGCGVASWGAYL--LSRNILAMSFAPRDSHEAQVQFALERGVPAMIGVLASNRLTY 245
           + LD GCG  S   Y       + A+  +     +AQ Q A +  V A I       L  
Sbjct: 45  SVLDAGCGPGSMSRYWRDAGAEVTALDLSLPMLRQAQSQQAAQHYVAADI-----EALPL 99

Query: 246 PARAFDMAHCSRCLIPWQLYDGLYLIEVDRILRPGG 353
               FD+A  S   + W    G  L  + R++RPGG
Sbjct: 100 ADARFDLA-WSNLAVQWCNDLGQALKSLHRVVRPGG 134

>TRUA2_BACCZ (Q63GF1) tRNA pseudouridine synthase A 2 (EC 5.4.99.12)|
           (tRNA-uridine isomerase I 2) (tRNA pseudouridylate
           synthase I 2)
          Length = 245

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 399 KGWQRTREDLNAEQQAIESVAKSLCWKKIKEVG 497
           KGWQR   + N  Q  IESV   +  K+I+ +G
Sbjct: 16  KGWQRLGNNDNTIQGKIESVISEMIGKEIEIIG 48

>TRUA2_BACCR (Q813Z9) tRNA pseudouridine synthase A 2 (EC 5.4.99.12)|
           (tRNA-uridine isomerase I 2) (tRNA pseudouridylate
           synthase I 2)
          Length = 245

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 399 KGWQRTREDLNAEQQAIESVAKSLCWKKIKEVG 497
           KGWQR   + N  Q  IESV   +  K+I+ +G
Sbjct: 16  KGWQRLGNNDNTIQGKIESVISEMVGKEIEIIG 48

>RFCL_HALMA (Q5V1F7) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit)
          Length = 508

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 351 GYWILSGPPINWKK--HSKGWQRTREDLNAEQQAIESVAKSLCWKKI 485
           G W   GPP  W K   SKG + TR+ +  +  AI+ V+     ++I
Sbjct: 320 GGWTRYGPPSYWSKLGRSKGTRNTRDYVAQQIAAIDGVSMRTARREI 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,903,895
Number of Sequences: 219361
Number of extensions: 1245212
Number of successful extensions: 4117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4115
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)