ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63c21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P05, full insert sequence Length = 2289 Score = 513 bits (259), Expect = e-142 Identities = 454/519 (87%) Strand = Plus / Plus Query: 2 cccccacggcgccggcgcctacatcgacgacatcggcaacctcatccccctccacgacgg 61 |||||||||||||| ||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 793 cccccacggcgccgacgcgtacatcgacgacattgggaagctcatcccgctccacgacgg 852 Query: 62 atccatccgcaccgccctcgacaccggctgcggggtggcgagctggggagcgtatctgtt 121 ||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 853 ctccgtccgcaccgcgctcgacaccggctgcggggtggcgagctggggcgcgtatctgct 912 Query: 122 gtcacgcaacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgca 181 ||| ||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 913 gtcccgcgacatcctggccatgtccttcgcgccgcgggactcccacgaggcgcaggtgca 972 Query: 182 gttcgcgctggaacgtggggtgccggcgatgatcggggtcctcgcctccaacaggctcac 241 |||||||||||| || || |||||||| |||||||| || |||||||||||| | ||||| Sbjct: 973 gttcgcgctggagcgcggcgtgccggccatgatcggcgtgctcgcctccaaccgcctcac 1032 Query: 242 ctatcctgcgcgcgccttcgacatggcgcactgctcccgctgcctaatcccctggcagct 301 ||| || || ||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 1033 ctacccggcccgcgccttcgacatggcgcactgctcccgctgcctcatcccctggcacct 1092 Query: 302 ctacgatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggat 361 ||||||||| |||| |||| ||||| || || |||| || || || || |||||||| Sbjct: 1093 ctacgatgggttgtatctgatcgaggttgaccgtgttctgcggccgggagggtactggat 1152 Query: 362 cttgtccggaccaccgatcaactggaagaagcactccaaggggtggcagaggaccaggga 421 | ||||||| || |||||||||||||||||| ||| || |||||| ||||||||| ||| Sbjct: 1153 cctgtccgggccgccgatcaactggaagaagtactggaaagggtgggagaggaccaagga 1212 Query: 422 ggacctgaacgcagagcagcaagccattgagtcagtcgccaagagcctctgctggaagaa 481 |||||||||||| |||||||| || || || | ||||||| |||||||||||||||||| Sbjct: 1213 ggacctgaacgccgagcagcaggctatcgaagccgtcgccaggagcctctgctggaagaa 1272 Query: 482 gatcaaggaggttggcgacattgccatctggcaaaagcc 520 ||||||||||| ||||||||| || ||||||| ||||| Sbjct: 1273 gatcaaggaggctggcgacatcgctgtctggcagaagcc 1311
>ref|XM_473556.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1941 Score = 500 bits (252), Expect = e-138 Identities = 452/519 (87%), Gaps = 6/519 (1%) Strand = Plus / Plus Query: 2 cccccacggcgccggcgcctacatcgacgacatcggcaacctcatccccctccacgacgg 61 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || Sbjct: 639 cccccacggcgccggcgcgtacatcgacgacatcggcaagatcatccccctccacgatgg 698 Query: 62 atccatccgcaccgccctcgacaccggctgcggggtggcgagctggggagcgtatctgtt 121 ||||||||||||||||||||||||||| || ||||| ||||||||||| || || || | Sbjct: 699 atccatccgcaccgccctcgacaccggttgtggggtagcgagctggggcgcatacttgct 758 Query: 122 gtcacgcaacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgca 181 |||||||||||||||||||||||| ||||| || || ||||| |||||||| ||||| || Sbjct: 759 gtcacgcaacatcctggccatgtccttcgcgccacgtgactctcacgaggcacaggttca 818 Query: 182 gttcgcgctggaacgtggggtgccggcgatgatcggggtcctcgcctccaacaggctcac 241 || || ||||||||||| ||||||||||||||||| || || | |||||| ||||||| Sbjct: 819 atttgcactggaacgtggtgtgccggcgatgatcggtgttctttcatccaaccggctcac 878 Query: 242 ctatcctgcgcgcgccttcgacatggcgcactgctcccgctgcctaatcccctggcagct 301 |||||| || || ||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct: 879 ctatccagctcgtgcctttgacatggcacattgctcccgctgcctcattccctggcagct 938 Query: 302 ctacgatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggat 361 ||||||||| ||||||||| |||||||||||||||||| || || || || || ||||| Sbjct: 939 ctacgatgggctgtacttggctgaggtggatcgcattctgcggccaggagggtattggat 998 Query: 362 cttgtccggaccaccgatcaactggaagaagcactccaaggggtggcagaggaccaggga 421 ||||| ||||| || ||||||||||||||||||| |||||||||||||| |||| ||| Sbjct: 999 tttgtctggacctccaatcaactggaagaagcactggaaggggtggcagagaaccaagga 1058 Query: 422 ggacctgaacgcagagcagcaagccattgagtcagtcgccaagagcctctgctggaagaa 481 ||||||||| |||||||||||||| |||||| |||| |||||||| || ||||||||||| Sbjct: 1059 ggacctgaatgcagagcagcaagcgattgaggcagtggccaagagtctttgctggaagaa 1118 Query: 482 ga------tcaaggaggttggcgacattgccatctggca 514 || ||||||||||||| ||||||||||||||||| Sbjct: 1119 gatcacgctcaaggaggttggtgacattgccatctggca 1157
>dbj|AK069684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N01, full insert sequence Length = 3063 Score = 500 bits (252), Expect = e-138 Identities = 452/519 (87%), Gaps = 6/519 (1%) Strand = Plus / Plus Query: 2 cccccacggcgccggcgcctacatcgacgacatcggcaacctcatccccctccacgacgg 61 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || Sbjct: 725 cccccacggcgccggcgcgtacatcgacgacatcggcaagatcatccccctccacgatgg 784 Query: 62 atccatccgcaccgccctcgacaccggctgcggggtggcgagctggggagcgtatctgtt 121 ||||||||||||||||||||||||||| || ||||| ||||||||||| || || || | Sbjct: 785 atccatccgcaccgccctcgacaccggttgtggggtagcgagctggggcgcatacttgct 844 Query: 122 gtcacgcaacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgca 181 |||||||||||||||||||||||| ||||| || || ||||| |||||||| ||||| || Sbjct: 845 gtcacgcaacatcctggccatgtccttcgcgccacgtgactctcacgaggcacaggttca 904 Query: 182 gttcgcgctggaacgtggggtgccggcgatgatcggggtcctcgcctccaacaggctcac 241 || || ||||||||||| ||||||||||||||||| || || | |||||| ||||||| Sbjct: 905 atttgcactggaacgtggtgtgccggcgatgatcggtgttctttcatccaaccggctcac 964 Query: 242 ctatcctgcgcgcgccttcgacatggcgcactgctcccgctgcctaatcccctggcagct 301 |||||| || || ||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct: 965 ctatccagctcgtgcctttgacatggcacattgctcccgctgcctcattccctggcagct 1024 Query: 302 ctacgatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggat 361 ||||||||| ||||||||| |||||||||||||||||| || || || || || ||||| Sbjct: 1025 ctacgatgggctgtacttggctgaggtggatcgcattctgcggccaggagggtattggat 1084 Query: 362 cttgtccggaccaccgatcaactggaagaagcactccaaggggtggcagaggaccaggga 421 ||||| ||||| || ||||||||||||||||||| |||||||||||||| |||| ||| Sbjct: 1085 tttgtctggacctccaatcaactggaagaagcactggaaggggtggcagagaaccaagga 1144 Query: 422 ggacctgaacgcagagcagcaagccattgagtcagtcgccaagagcctctgctggaagaa 481 ||||||||| |||||||||||||| |||||| |||| |||||||| || ||||||||||| Sbjct: 1145 ggacctgaatgcagagcagcaagcgattgaggcagtggccaagagtctttgctggaagaa 1204 Query: 482 ga------tcaaggaggttggcgacattgccatctggca 514 || ||||||||||||| ||||||||||||||||| Sbjct: 1205 gatcacgctcaaggaggttggtgacattgccatctggca 1243
>dbj|AK099906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116A04, full insert sequence Length = 2060 Score = 484 bits (244), Expect = e-133 Identities = 450/519 (86%), Gaps = 6/519 (1%) Strand = Plus / Plus Query: 2 cccccacggcgccggcgcctacatcgacgacatcggcaacctcatccccctccacgacgg 61 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || Sbjct: 725 cccccacggcgccggcgcgtacatcgacgacatcggcaagatcatccccctccacgatgg 784 Query: 62 atccatccgcaccgccctcgacaccggctgcggggtggcgagctggggagcgtatctgtt 121 ||||||||||||||||||||||||||| || ||||| ||||||||||| || || || | Sbjct: 785 atccatccgcaccgccctcgacaccggttgtggggtagcgagctggggcgcatacttgct 844 Query: 122 gtcacgcaacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgca 181 |||||||||||||||||||||||| ||||| || || ||||| |||||||| ||||| || Sbjct: 845 gtcacgcaacatcctggccatgtccttcgcgccacgtgactctcacgaggcacaggttca 904 Query: 182 gttcgcgctggaacgtggggtgccggcgatgatcggggtcctcgcctccaacaggctcac 241 || || ||||||||||| ||||||||||||||||| || || | |||||| ||||||| Sbjct: 905 atttgcactggaacgtggtgtgccggcgatgatcggtgttctttcatccaaccggctcac 964 Query: 242 ctatcctgcgcgcgccttcgacatggcgcactgctcccgctgcctaatcccctggcagct 301 |||||| || || ||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct: 965 ctatccagctcgtgcctttgacatggcacattgctcccgctgcctcattccctggcagct 1024 Query: 302 ctacgatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggat 361 ||||||||| ||||||||| |||||||||||||||||| || || || || || ||||| Sbjct: 1025 ctacgatgggctgtacttggctgaggtggatcgcattctgcggccaggagggtattggat 1084 Query: 362 cttgtccggaccaccgatcaactggaagaagcactccaaggggtggcagaggaccaggga 421 ||||| ||||| || ||||||||||||||||||| |||||||||||||| |||| ||| Sbjct: 1085 tttgtctggacctccaatcaactggaagaagcactggaaggggtggcagagaaccaagga 1144 Query: 422 ggacctgaacgcagagcagcaagccattgagtcagtcgccaagagcctctgctggaagaa 481 || |||||| || ||||||||||| |||||| |||| |||||||| || ||||||||||| Sbjct: 1145 gggcctgaatgcggagcagcaagcgattgaggcagtggccaagagtctttgctggaagaa 1204 Query: 482 ga------tcaaggaggttggcgacattgccatctggca 514 || ||||||||||||| ||||||||||||||||| Sbjct: 1205 gatcacgctcaaggaggttggtgacattgccatctggca 1243
>gb|AY106150.1| Zea mays PCO099943 mRNA sequence Length = 1572 Score = 379 bits (191), Expect = e-102 Identities = 407/479 (84%) Strand = Plus / Plus Query: 36 ggcaacctcatccccctccacgacggatccatccgcaccgccctcgacaccggctgcggg 95 ||||| || |||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct: 8 ggcaagcttatccccctccacgacggatccatccggaccgctcttgacaccggctgcggg 67 Query: 96 gtggcgagctggggagcgtatctgttgtcacgcaacatcctggccatgtcgttcgctccg 155 ||||||||||||||||| || || |||||||||||||||| |||||||| ||||| ||| Sbjct: 68 gtggcgagctggggagcctacttgctgtcacgcaacatccttgccatgtccttcgccccg 127 Query: 156 cgggactcgcacgaggcgcaggtgcagttcgcgctggaacgtggggtgccggcgatgatc 215 || ||||| |||||||||||||| ||||| || || || ||||| |||||||||||||| Sbjct: 128 cgagactcccacgaggcgcaggttcagtttgcactagagcgtggtgtgccggcgatgatt 187 Query: 216 ggggtcctcgcctccaacaggctcacctatcctgcgcgcgccttcgacatggcgcactgc 275 |||||||| |||||||| ||||| ||||| || || |||| ||||||||||| ||| Sbjct: 188 ggggtccttgcctccaatcaactcacttatccggcacgttcctttgacatggcgcattgc 247 Query: 276 tcccgctgcctaatcccctggcagctctacgatggcctgtacttgattgaggtggatcgc 335 || || ||||| ||||| |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 248 tctcgttgcctcatcccatggcagctttacgacgggctgtacttgatagaggttgatcgt 307 Query: 336 attcttcgtcctgggggctactggatcttgtccggaccaccgatcaactggaagaagcac 395 || || |||||||| || || ||||| ||||| |||||||| || ||||||||||| ||| Sbjct: 308 atcctgcgtcctggaggttattggattttgtctggaccaccaataaactggaagaaacac 367 Query: 396 tccaaggggtggcagaggaccagggaggacctgaacgcagagcagcaagccattgagtca 455 | ||||||||| | ||||| | || |||||| ||||||||||| ||||||| ||| || Sbjct: 368 tggaaggggtgggacaggactaaagaagacctggacgcagagcagaaagccatcgaggca 427 Query: 456 gtcgccaagagcctctgctggaagaagatcaaggaggttggcgacattgccatctggca 514 || |||| |||||| || ||||||||||||||||||| ||||||||||| |||||||| Sbjct: 428 gttgccaggagcctatgttggaagaagatcaaggaggagggcgacattgctatctggca 486
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 262 bits (132), Expect = 1e-66 Identities = 192/212 (90%) Strand = Plus / Minus Query: 95 ggtggcgagctggggagcgtatctgttgtcacgcaacatcctggccatgtcgttcgctcc 154 ||||||||||||||| ||||||||| |||| ||| |||||||||||||||| ||||| || Sbjct: 27551348 ggtggcgagctggggcgcgtatctgctgtcccgcgacatcctggccatgtccttcgcgcc 27551289 Query: 155 gcgggactcgcacgaggcgcaggtgcagttcgcgctggaacgtggggtgccggcgatgat 214 ||||||||| ||||||||||||||||||||||||||||| || || |||||||| ||||| Sbjct: 27551288 gcgggactcccacgaggcgcaggtgcagttcgcgctggagcgcggcgtgccggccatgat 27551229 Query: 215 cggggtcctcgcctccaacaggctcacctatcctgcgcgcgccttcgacatggcgcactg 274 ||| || |||||||||||| | |||||||| || || ||||||||||||||||||||||| Sbjct: 27551228 cggcgtgctcgcctccaaccgcctcacctacccggcccgcgccttcgacatggcgcactg 27551169 Query: 275 ctcccgctgcctaatcccctggcagctctacg 306 |||||||||||| ||||||||||| ||||||| Sbjct: 27551168 ctcccgctgcctcatcccctggcacctctacg 27551137 Score = 157 bits (79), Expect = 4e-35 Identities = 145/167 (86%) Strand = Plus / Minus Query: 354 tactggatcttgtccggaccaccgatcaactggaagaagcactccaaggggtggcagagg 413 ||||||||| ||||||| || |||||||||||||||||| ||| || |||||| ||||| Sbjct: 27550993 tactggatcctgtccgggccgccgatcaactggaagaagtactggaaagggtgggagagg 27550934 Query: 414 accagggaggacctgaacgcagagcagcaagccattgagtcagtcgccaagagcctctgc 473 |||| ||||||||||||||| |||||||| || || || | ||||||| |||||||||| Sbjct: 27550933 accaaggaggacctgaacgccgagcagcaggctatcgaagccgtcgccaggagcctctgc 27550874 Query: 474 tggaagaagatcaaggaggttggcgacattgccatctggcaaaagcc 520 ||||||||||||||||||| ||||||||| || ||||||| ||||| Sbjct: 27550873 tggaagaagatcaaggaggctggcgacatcgctgtctggcagaagcc 27550827 Score = 119 bits (60), Expect = 9e-24 Identities = 87/96 (90%) Strand = Plus / Minus Query: 2 cccccacggcgccggcgcctacatcgacgacatcggcaacctcatccccctccacgacgg 61 |||||||||||||| ||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 27552325 cccccacggcgccgacgcgtacatcgacgacattgggaagctcatcccgctccacgacgg 27552266 Query: 62 atccatccgcaccgccctcgacaccggctgcggggt 97 ||| |||||||||| |||||||||||||||||||| Sbjct: 27552265 ctccgtccgcaccgcgctcgacaccggctgcggggt 27552230
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 262 bits (132), Expect = 1e-66 Identities = 192/212 (90%) Strand = Plus / Minus Query: 95 ggtggcgagctggggagcgtatctgttgtcacgcaacatcctggccatgtcgttcgctcc 154 ||||||||||||||| ||||||||| |||| ||| |||||||||||||||| ||||| || Sbjct: 31017 ggtggcgagctggggcgcgtatctgctgtcccgcgacatcctggccatgtccttcgcgcc 30958 Query: 155 gcgggactcgcacgaggcgcaggtgcagttcgcgctggaacgtggggtgccggcgatgat 214 ||||||||| ||||||||||||||||||||||||||||| || || |||||||| ||||| Sbjct: 30957 gcgggactcccacgaggcgcaggtgcagttcgcgctggagcgcggcgtgccggccatgat 30898 Query: 215 cggggtcctcgcctccaacaggctcacctatcctgcgcgcgccttcgacatggcgcactg 274 ||| || |||||||||||| | |||||||| || || ||||||||||||||||||||||| Sbjct: 30897 cggcgtgctcgcctccaaccgcctcacctacccggcccgcgccttcgacatggcgcactg 30838 Query: 275 ctcccgctgcctaatcccctggcagctctacg 306 |||||||||||| ||||||||||| ||||||| Sbjct: 30837 ctcccgctgcctcatcccctggcacctctacg 30806 Score = 157 bits (79), Expect = 4e-35 Identities = 145/167 (86%) Strand = Plus / Minus Query: 354 tactggatcttgtccggaccaccgatcaactggaagaagcactccaaggggtggcagagg 413 ||||||||| ||||||| || |||||||||||||||||| ||| || |||||| ||||| Sbjct: 30662 tactggatcctgtccgggccgccgatcaactggaagaagtactggaaagggtgggagagg 30603 Query: 414 accagggaggacctgaacgcagagcagcaagccattgagtcagtcgccaagagcctctgc 473 |||| ||||||||||||||| |||||||| || || || | ||||||| |||||||||| Sbjct: 30602 accaaggaggacctgaacgccgagcagcaggctatcgaagccgtcgccaggagcctctgc 30543 Query: 474 tggaagaagatcaaggaggttggcgacattgccatctggcaaaagcc 520 ||||||||||||||||||| ||||||||| || ||||||| ||||| Sbjct: 30542 tggaagaagatcaaggaggctggcgacatcgctgtctggcagaagcc 30496 Score = 119 bits (60), Expect = 9e-24 Identities = 87/96 (90%) Strand = Plus / Minus Query: 2 cccccacggcgccggcgcctacatcgacgacatcggcaacctcatccccctccacgacgg 61 |||||||||||||| ||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 31994 cccccacggcgccgacgcgtacatcgacgacattgggaagctcatcccgctccacgacgg 31935 Query: 62 atccatccgcaccgccctcgacaccggctgcggggt 97 ||| |||||||||| |||||||||||||||||||| Sbjct: 31934 ctccgtccgcaccgcgctcgacaccggctgcggggt 31899
>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence Length = 164572 Score = 190 bits (96), Expect = 3e-45 Identities = 185/215 (86%), Gaps = 6/215 (2%) Strand = Plus / Plus Query: 306 gatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggatcttg 365 ||||| ||||||||| |||||||||||||||||| || || || || || ||||| ||| Sbjct: 92064 gatgggctgtacttggctgaggtggatcgcattctgcggccaggagggtattggattttg 92123 Query: 366 tccggaccaccgatcaactggaagaagcactccaaggggtggcagaggaccagggaggac 425 || ||||| || ||||||||||||||||||| |||||||||||||| |||| ||||||| Sbjct: 92124 tctggacctccaatcaactggaagaagcactggaaggggtggcagagaaccaaggaggac 92183 Query: 426 ctgaacgcagagcagcaagccattgagtcagtcgccaagagcctctgctggaagaaga-- 483 ||||| |||||||||||||| |||||| |||| |||||||| || ||||||||||||| Sbjct: 92184 ctgaatgcagagcagcaagcgattgaggcagtggccaagagtctttgctggaagaagatc 92243 Query: 484 ----tcaaggaggttggcgacattgccatctggca 514 ||||||||||||| ||||||||||||||||| Sbjct: 92244 acgctcaaggaggttggtgacattgccatctggca 92278 Score = 174 bits (88), Expect = 2e-40 Identities = 178/208 (85%) Strand = Plus / Plus Query: 99 gcgagctggggagcgtatctgttgtcacgcaacatcctggccatgtcgttcgctccgcgg 158 ||||||||||| || || || ||||||||||||||||||||||||| ||||| || || Sbjct: 91773 gcgagctggggcgcatacttgctgtcacgcaacatcctggccatgtccttcgcgccacgt 91832 Query: 159 gactcgcacgaggcgcaggtgcagttcgcgctggaacgtggggtgccggcgatgatcggg 218 ||||| |||||||| ||||| || || || ||||||||||| ||||||||||||||||| Sbjct: 91833 gactctcacgaggcacaggttcaatttgcactggaacgtggtgtgccggcgatgatcggt 91892 Query: 219 gtcctcgcctccaacaggctcacctatcctgcgcgcgccttcgacatggcgcactgctcc 278 || || | |||||| ||||||||||||| || || ||||| |||||||| || |||||| Sbjct: 91893 gttctttcatccaaccggctcacctatccagctcgtgcctttgacatggcacattgctcc 91952 Query: 279 cgctgcctaatcccctggcagctctacg 306 |||||||| || |||||||||||||||| Sbjct: 91953 cgctgcctcattccctggcagctctacg 91980 Score = 143 bits (72), Expect = 7e-31 Identities = 90/96 (93%) Strand = Plus / Plus Query: 2 cccccacggcgccggcgcctacatcgacgacatcggcaacctcatccccctccacgacgg 61 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || Sbjct: 90922 cccccacggcgccggcgcgtacatcgacgacatcggcaagatcatccccctccacgatgg 90981 Query: 62 atccatccgcaccgccctcgacaccggctgcggggt 97 ||||||||||||||||||||||||||| || ||||| Sbjct: 90982 atccatccgcaccgccctcgacaccggttgtggggt 91017
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 190 bits (96), Expect = 3e-45 Identities = 185/215 (86%), Gaps = 6/215 (2%) Strand = Plus / Minus Query: 306 gatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggatcttg 365 ||||| ||||||||| |||||||||||||||||| || || || || || ||||| ||| Sbjct: 28698894 gatgggctgtacttggctgaggtggatcgcattctgcggccaggagggtattggattttg 28698835 Query: 366 tccggaccaccgatcaactggaagaagcactccaaggggtggcagaggaccagggaggac 425 || ||||| || ||||||||||||||||||| |||||||||||||| |||| ||||||| Sbjct: 28698834 tctggacctccaatcaactggaagaagcactggaaggggtggcagagaaccaaggaggac 28698775 Query: 426 ctgaacgcagagcagcaagccattgagtcagtcgccaagagcctctgctggaagaaga-- 483 ||||| |||||||||||||| |||||| |||| |||||||| || ||||||||||||| Sbjct: 28698774 ctgaatgcagagcagcaagcgattgaggcagtggccaagagtctttgctggaagaagatc 28698715 Query: 484 ----tcaaggaggttggcgacattgccatctggca 514 ||||||||||||| ||||||||||||||||| Sbjct: 28698714 acgctcaaggaggttggtgacattgccatctggca 28698680 Score = 174 bits (88), Expect = 2e-40 Identities = 178/208 (85%) Strand = Plus / Minus Query: 99 gcgagctggggagcgtatctgttgtcacgcaacatcctggccatgtcgttcgctccgcgg 158 ||||||||||| || || || ||||||||||||||||||||||||| ||||| || || Sbjct: 28699185 gcgagctggggcgcatacttgctgtcacgcaacatcctggccatgtccttcgcgccacgt 28699126 Query: 159 gactcgcacgaggcgcaggtgcagttcgcgctggaacgtggggtgccggcgatgatcggg 218 ||||| |||||||| ||||| || || || ||||||||||| ||||||||||||||||| Sbjct: 28699125 gactctcacgaggcacaggttcaatttgcactggaacgtggtgtgccggcgatgatcggt 28699066 Query: 219 gtcctcgcctccaacaggctcacctatcctgcgcgcgccttcgacatggcgcactgctcc 278 || || | |||||| ||||||||||||| || || ||||| |||||||| || |||||| Sbjct: 28699065 gttctttcatccaaccggctcacctatccagctcgtgcctttgacatggcacattgctcc 28699006 Query: 279 cgctgcctaatcccctggcagctctacg 306 |||||||| || |||||||||||||||| Sbjct: 28699005 cgctgcctcattccctggcagctctacg 28698978 Score = 143 bits (72), Expect = 7e-31 Identities = 90/96 (93%) Strand = Plus / Minus Query: 2 cccccacggcgccggcgcctacatcgacgacatcggcaacctcatccccctccacgacgg 61 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || Sbjct: 28700036 cccccacggcgccggcgcgtacatcgacgacatcggcaagatcatccccctccacgatgg 28699977 Query: 62 atccatccgcaccgccctcgacaccggctgcggggt 97 ||||||||||||||||||||||||||| || ||||| Sbjct: 28699976 atccatccgcaccgccctcgacaccggttgtggggt 28699941
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08, complete sequence Length = 173088 Score = 172 bits (87), Expect = 7e-40 Identities = 141/159 (88%) Strand = Plus / Minus Query: 138 gccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctggaacgt 197 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 65741 gccatgtcgttcgcgccgcgggactcgcacgaggcgcaggtgcagttcgcgctggagcgc 65682 Query: 198 ggggtgccggcgatgatcggggtcctcgcctccaacaggctcacctatcctgcgcgcgcc 257 || || |||||| | ||||| ||||||| ||||| || |||| ||| ||| | ||| || Sbjct: 65681 ggcgtcccggcgttcatcggcgtcctcggctccatcaagctccccttccctccccgctcc 65622 Query: 258 ttcgacatggcgcactgctcccgctgcctaatcccctgg 296 ||||||||||||||||||||||||||||| ||||||||| Sbjct: 65621 ttcgacatggcgcactgctcccgctgcctcatcccctgg 65583 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 56 cgacggatccatccgcaccgccctcgacaccggctgcgg 94 |||||| ||| ||||||||| |||||||||||||||||| Sbjct: 65925 cgacggctccgtccgcaccgtcctcgacaccggctgcgg 65887
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 172 bits (87), Expect = 7e-40 Identities = 141/159 (88%) Strand = Plus / Plus Query: 138 gccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctggaacgt 197 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 22275557 gccatgtcgttcgcgccgcgggactcgcacgaggcgcaggtgcagttcgcgctggagcgc 22275616 Query: 198 ggggtgccggcgatgatcggggtcctcgcctccaacaggctcacctatcctgcgcgcgcc 257 || || |||||| | ||||| ||||||| ||||| || |||| ||| ||| | ||| || Sbjct: 22275617 ggcgtcccggcgttcatcggcgtcctcggctccatcaagctccccttccctccccgctcc 22275676 Query: 258 ttcgacatggcgcactgctcccgctgcctaatcccctgg 296 ||||||||||||||||||||||||||||| ||||||||| Sbjct: 22275677 ttcgacatggcgcactgctcccgctgcctcatcccctgg 22275715 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 4363133 gcacgaggcgcaggtgcagttcgcgctgga 4363162 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 56 cgacggatccatccgcaccgccctcgacaccggctgcgg 94 |||||| ||| ||||||||| |||||||||||||||||| Sbjct: 22275373 cgacggctccgtccgcaccgtcctcgacaccggctgcgg 22275411
>dbj|AK121243.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099B06, full insert sequence Length = 2310 Score = 172 bits (87), Expect = 7e-40 Identities = 141/159 (88%) Strand = Plus / Plus Query: 138 gccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctggaacgt 197 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 871 gccatgtcgttcgcgccgcgggactcgcacgaggcgcaggtgcagttcgcgctggagcgc 930 Query: 198 ggggtgccggcgatgatcggggtcctcgcctccaacaggctcacctatcctgcgcgcgcc 257 || || |||||| | ||||| ||||||| ||||| || |||| ||| ||| | ||| || Sbjct: 931 ggcgtcccggcgttcatcggcgtcctcggctccatcaagctccccttccctccccgctcc 990 Query: 258 ttcgacatggcgcactgctcccgctgcctaatcccctgg 296 ||||||||||||||||||||||||||||| ||||||||| Sbjct: 991 ttcgacatggcgcactgctcccgctgcctcatcccctgg 1029 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 56 cgacggatccatccgcaccgccctcgacaccggctgcggggtggcgagc 104 |||||| ||| ||||||||| |||||||||||||||||| ||||||||| Sbjct: 789 cgacggctccgtccgcaccgtcctcgacaccggctgcggcgtggcgagc 837
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 172 bits (87), Expect = 7e-40 Identities = 141/159 (88%) Strand = Plus / Plus Query: 138 gccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctggaacgt 197 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 22585468 gccatgtcgttcgcgccgcgggactcgcacgaggcgcaggtgcagttcgcgctggagcgc 22585527 Query: 198 ggggtgccggcgatgatcggggtcctcgcctccaacaggctcacctatcctgcgcgcgcc 257 || || |||||| | ||||| ||||||| ||||| || |||| ||| ||| | ||| || Sbjct: 22585528 ggcgtcccggcgttcatcggcgtcctcggctccatcaagctccccttccctccccgctcc 22585587 Query: 258 ttcgacatggcgcactgctcccgctgcctaatcccctgg 296 ||||||||||||||||||||||||||||| ||||||||| Sbjct: 22585588 ttcgacatggcgcactgctcccgctgcctcatcccctgg 22585626 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 4371827 gcacgaggcgcaggtgcagttcgcgctgga 4371856 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 56 cgacggatccatccgcaccgccctcgacaccggctgcgg 94 |||||| ||| ||||||||| |||||||||||||||||| Sbjct: 22585284 cgacggctccgtccgcaccgtcctcgacaccggctgcgg 22585322
>ref|NM_185478.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1857 Score = 127 bits (64), Expect = 4e-26 Identities = 178/216 (82%) Strand = Plus / Plus Query: 81 gacaccggctgcggggtggcgagctggggagcgtatctgttgtcacgcaacatcctggcc 140 ||||||||||||||||| ||||||||||||||||| ||| |||| ||| || | ||| | Sbjct: 649 gacaccggctgcggggtcgcgagctggggagcgtacctgctgtcgcgcgacgtgctgacg 708 Query: 141 atgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctggaacgtggg 200 ||||||||||| || |||| |||||||||||||||||| ||||| ||||| || || Sbjct: 709 atgtcgttcgcgcccaaggacacgcacgaggcgcaggtgctcttcgccctggagcgcggc 768 Query: 201 gtgccggcgatgatcggggtcctcgcctccaacaggctcacctatcctgcgcgcgccttc 260 || ||||| ||| |||| || | ||| |||| | || | || || || ||||||||| Sbjct: 769 gtcccggccatgctcggcatcatggccaccaagcgccttccttacccggctcgcgccttc 828 Query: 261 gacatggcgcactgctcccgctgcctaatcccctgg 296 |||||||||||||||||||||||||| ||||||||| Sbjct: 829 gacatggcgcactgctcccgctgcctcatcccctgg 864
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 127 bits (64), Expect = 4e-26 Identities = 121/140 (86%) Strand = Plus / Minus Query: 381 aactggaagaagcactccaaggggtggcagaggaccagggaggacctgaacgcagagcag 440 |||||||||||| ||| || |||||| ||||||||| ||||||||||||||| |||||| Sbjct: 142688 aactggaagaagtactggaaagggtgggagaggaccaaggaggacctgaacgccgagcag 142629 Query: 441 caagccattgagtcagtcgccaagagcctctgctggaagaagatcaaggaggttggcgac 500 || || || || | ||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 142628 caggctatcgaagccgtcgccaggagcctctgctggaagaagatcaaggaggctggcgac 142569 Query: 501 attgccatctggcaaaagcc 520 || || ||||||| ||||| Sbjct: 142568 atcgctgtctggcagaagcc 142549
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 99.6 bits (50), Expect = 9e-18 Identities = 161/198 (81%) Strand = Plus / Plus Query: 99 gcgagctggggagcgtatctgttgtcacgcaacatcctggccatgtcgttcgctccgcgg 158 ||||||||||||||||| ||| |||| ||| || | ||| | ||||||||||| || | Sbjct: 1480582 gcgagctggggagcgtacctgctgtcgcgcgacgtgctgacgatgtcgttcgcgcccaag 1480641 Query: 159 gactcgcacgaggcgcaggtgcagttcgcgctggaacgtggggtgccggcgatgatcggg 218 ||| |||||||||||||||||| ||||| ||||| || || || ||||| ||| |||| Sbjct: 1480642 gacacgcacgaggcgcaggtgctcttcgccctggagcgcggcgtcccggccatgctcggc 1480701 Query: 219 gtcctcgcctccaacaggctcacctatcctgcgcgcgccttcgacatggcgcactgctcc 278 || | ||| |||| | || | || || || ||||||||||||||||||||||||||| Sbjct: 1480702 atcatggccaccaagcgccttccttacccggctcgcgccttcgacatggcgcactgctcc 1480761 Query: 279 cgctgcctaatcccctgg 296 |||||||| ||||||||| Sbjct: 1480762 cgctgcctcatcccctgg 1480779 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 136 tggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||| || |||| ||||||||||||||||||| | |||||||| Sbjct: 29669122 tggccatgtcgttcgcgcccaaggacgagcacgaggcgcaggtgcagatggcgctgga 29669179
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 99.6 bits (50), Expect = 9e-18 Identities = 161/198 (81%) Strand = Plus / Plus Query: 99 gcgagctggggagcgtatctgttgtcacgcaacatcctggccatgtcgttcgctccgcgg 158 ||||||||||||||||| ||| |||| ||| || | ||| | ||||||||||| || | Sbjct: 87868 gcgagctggggagcgtacctgctgtcgcgcgacgtgctgacgatgtcgttcgcgcccaag 87927 Query: 159 gactcgcacgaggcgcaggtgcagttcgcgctggaacgtggggtgccggcgatgatcggg 218 ||| |||||||||||||||||| ||||| ||||| || || || ||||| ||| |||| Sbjct: 87928 gacacgcacgaggcgcaggtgctcttcgccctggagcgcggcgtcccggccatgctcggc 87987 Query: 219 gtcctcgcctccaacaggctcacctatcctgcgcgcgccttcgacatggcgcactgctcc 278 || | ||| |||| | || | || || || ||||||||||||||||||||||||||| Sbjct: 87988 atcatggccaccaagcgccttccttacccggctcgcgccttcgacatggcgcactgctcc 88047 Query: 279 cgctgcctaatcccctgg 296 |||||||| ||||||||| Sbjct: 88048 cgctgcctcatcccctgg 88065
>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0538C01 Length = 155643 Score = 99.6 bits (50), Expect = 9e-18 Identities = 161/198 (81%) Strand = Plus / Plus Query: 99 gcgagctggggagcgtatctgttgtcacgcaacatcctggccatgtcgttcgctccgcgg 158 ||||||||||||||||| ||| |||| ||| || | ||| | ||||||||||| || | Sbjct: 9306 gcgagctggggagcgtacctgctgtcgcgcgacgtgctgacgatgtcgttcgcgcccaag 9365 Query: 159 gactcgcacgaggcgcaggtgcagttcgcgctggaacgtggggtgccggcgatgatcggg 218 ||| |||||||||||||||||| ||||| ||||| || || || ||||| ||| |||| Sbjct: 9366 gacacgcacgaggcgcaggtgctcttcgccctggagcgcggcgtcccggccatgctcggc 9425 Query: 219 gtcctcgcctccaacaggctcacctatcctgcgcgcgccttcgacatggcgcactgctcc 278 || | ||| |||| | || | || || || ||||||||||||||||||||||||||| Sbjct: 9426 atcatggccaccaagcgccttccttacccggctcgcgccttcgacatggcgcactgctcc 9485 Query: 279 cgctgcctaatcccctgg 296 |||||||| ||||||||| Sbjct: 9486 cgctgcctcatcccctgg 9503
>gb|AY104759.1| Zea mays PCO076392 mRNA sequence Length = 1034 Score = 69.9 bits (35), Expect = 8e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 254 cgccttcgacatggcgcactgctcccgctgcctaatcccctgg 296 |||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 420 cgccttcgacatggcgcactgctcgcgctgcctcatcccctgg 462 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 67 tccgcaccgccctcgacaccggctgcggggtggcgagctgggg 109 |||||||||| ||||||||||||||||| || || |||||||| Sbjct: 233 tccgcaccgcgctcgacaccggctgcggcgtcgccagctgggg 275 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 165 cacgaggcgcaggtgcagttcgcgctgga 193 |||||||| |||||||||||||||||||| Sbjct: 331 cacgaggcccaggtgcagttcgcgctgga 359
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08 map MAP_LOC, complete sequence Length = 154839 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 144643 gcacgaggcgcaggtgcagttcgcgctgga 144672
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 14496 gcacgaggcgcaggtgcagttcgcgctgga 14525
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 3968303 gcacgaggcgcaggtgcagttcgcgctgga 3968332
>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence Length = 105215 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 93939 gcacgaggcgcaggtgcagttcgcgctgga 93968
>dbj|AK109545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E05, full insert sequence Length = 3015 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 1698 gcacgaggcgcaggtgcagttcgcgctgga 1727
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 3968277 gcacgaggcgcaggtgcagttcgcgctgga 3968306
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 4712 gcacgaggcgcaggtgcagttcgcgctgga 4741
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 164 gcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||||||||||||||||| Sbjct: 130279 gcacgaggcgcaggtgcagttcgcgctgga 130308
>dbj|AK065174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D01, full insert sequence Length = 2791 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 165 cacgaggcgcaggtgcagttcgcgctgga 193 ||||||||||||||||||||||||||||| Sbjct: 1239 cacgaggcgcaggtgcagttcgcgctgga 1267 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 258 ttcgacatggcgcactgctcccgctgcctaatccc 292 ||||||||||||||||||||| | ||||| ||||| Sbjct: 1332 ttcgacatggcgcactgctccaggtgcctcatccc 1366
>dbj|AP005463.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0712G01 Length = 87056 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 136 tggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||| || |||| ||||||||||||||||||| | |||||||| Sbjct: 42236 tggccatgtcgttcgcgcccaaggacgagcacgaggcgcaggtgcagatggcgctgga 42293
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1663_H12 Length = 125422 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 136 tggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||| || |||| ||||||||||||||||||| | |||||||| Sbjct: 112707 tggccatgtcgttcgcgcccaaggacgagcacgaggcgcaggtgcagatggcgctgga 112764
>dbj|AK121236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094P08, full insert sequence Length = 2301 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 136 tggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcgctgga 193 |||||||||||||||| || |||| ||||||||||||||||||| | |||||||| Sbjct: 1580 tggccatgtcgttcgcgcccaaggacgagcacgaggcgcaggtgcagatggcgctgga 1637
>ref|NM_197301.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0005K07.2), mRNA Length = 2259 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 129 aacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcg 188 |||||||| || |||||||| || ||| ||||| | || || || |||||||| |||||| Sbjct: 894 aacatccttgcaatgtcgtttgcaccgagggacacccatgaagctcaggtgcaattcgcg 953 Query: 189 ctggaacgtggggtgccggcgatgatcgg 217 ||||| || || |||||||| || ||||| Sbjct: 954 ctggagcggggtgtgccggccatcatcgg 982
>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete sequence Length = 113606 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 129 aacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcg 188 |||||||| || |||||||| || ||| ||||| | || || || |||||||| |||||| Sbjct: 57141 aacatccttgcaatgtcgtttgcaccgagggacacccatgaagctcaggtgcaattcgcg 57200 Query: 189 ctggaacgtggggtgccggcgatgatcgg 217 ||||| || || |||||||| || ||||| Sbjct: 57201 ctggagcggggtgtgccggccatcatcgg 57229
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 129 aacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcg 188 |||||||| || |||||||| || ||| ||||| | || || || |||||||| |||||| Sbjct: 19104570 aacatccttgcaatgtcgtttgcaccgagggacacccatgaagctcaggtgcaattcgcg 19104629 Query: 189 ctggaacgtggggtgccggcgatgatcgg 217 ||||| || || |||||||| || ||||| Sbjct: 19104630 ctggagcggggtgtgccggccatcatcgg 19104658
>dbj|AK100601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D05, full insert sequence Length = 2722 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 129 aacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcg 188 |||||||| || |||||||| || ||| ||||| | || || || |||||||| |||||| Sbjct: 1075 aacatccttgcaatgtcgtttgcaccgagggacacccatgaagctcaggtgcaattcgcg 1134 Query: 189 ctggaacgtggggtgccggcgatgatcgg 217 ||||| || || |||||||| || ||||| Sbjct: 1135 ctggagcggggtgtgccggccatcatcgg 1163
>dbj|AK073237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005B11, full insert sequence Length = 2538 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 129 aacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcg 188 |||||||| || |||||||| || ||| ||||| | || || || |||||||| |||||| Sbjct: 978 aacatccttgcaatgtcgtttgcaccgagggacacccatgaagctcaggtgcaattcgcg 1037 Query: 189 ctggaacgtggggtgccggcgatgatcgg 217 ||||| || || |||||||| || ||||| Sbjct: 1038 ctggagcggggtgtgccggccatcatcgg 1066
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Plus Query: 129 aacatcctggccatgtcgttcgctccgcgggactcgcacgaggcgcaggtgcagttcgcg 188 |||||||| || |||||||| || ||| ||||| | || || || |||||||| |||||| Sbjct: 19115846 aacatccttgcaatgtcgtttgcaccgagggacacccatgaagctcaggtgcaattcgcg 19115905 Query: 189 ctggaacgtggggtgccggcgatgatcgg 217 ||||| || || |||||||| || ||||| Sbjct: 19115906 ctggagcggggtgtgccggccatcatcgg 19115934
>ref|NM_128981.2| Arabidopsis thaliana unknown protein AT2G34300 transcript variant AT2G34300.1 mRNA, complete cds Length = 2666 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Plus Query: 168 gaggcgcaggtgcagttcgcgctggaacgtgg 199 |||||||| ||||| ||||||||||||||||| Sbjct: 1340 gaggcgcaagtgcaattcgcgctggaacgtgg 1371
>ref|NM_001036400.1| Arabidopsis thaliana unknown protein AT2G34300 transcript variant AT2G34300.2 mRNA, complete cds Length = 2641 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Plus Query: 168 gaggcgcaggtgcagttcgcgctggaacgtgg 199 |||||||| ||||| ||||||||||||||||| Sbjct: 1272 gaggcgcaagtgcaattcgcgctggaacgtgg 1303
>emb|AJ810709.1| Poa pratensis mRNA for Ankyrin protein kinase-like (apk gene) Length = 2703 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Plus Query: 81 gacaccggctgcggggtggcgagctggggagc 112 ||||| |||||||||||||| ||||||||||| Sbjct: 946 gacactggctgcggggtggctagctggggagc 977
>gb|AC004481.3| Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence Length = 112763 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Minus Query: 168 gaggcgcaggtgcagttcgcgctggaacgtgg 199 |||||||| ||||| ||||||||||||||||| Sbjct: 45884 gaggcgcaagtgcaattcgcgctggaacgtgg 45853
>ref|NM_130138.2| Arabidopsis thaliana unknown protein AT2G45750 mRNA, complete cds Length = 2136 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 180 cagttcgcgctggaacgtggggtgccggcgatgatcgg 217 |||||||| || || ||||| ||||||||||||||||| Sbjct: 855 cagttcgcactcgagcgtggtgtgccggcgatgatcgg 892
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 23 catcgacgacatcggcaacctcatcc 48 ||||||||||| |||||||||||||| Sbjct: 2719602 catcgacgacaacggcaacctcatcc 2719577
>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence Length = 101647 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 180 cagttcgcgctggaacgtggggtgccggcgatgatcgg 217 |||||||| || || ||||| ||||||||||||||||| Sbjct: 82964 cagttcgcactcgagcgtggtgtgccggcgatgatcgg 82927
>gb|AC107733.14| Mus musculus chromosome 5, clone RP23-410E2, complete sequence Length = 200403 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 433 cagagcagcaagccattgagtcagt 457 |||||||||||| |||||||||||| Sbjct: 59852 cagagcagcaagacattgagtcagt 59876
>gb|AC091506.2| Sus scrofa clone RP44-348C20, complete sequence Length = 194809 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ggggtggcgagctggggagcg 113 ||||||||||||||||||||| Sbjct: 148407 ggggtggcgagctggggagcg 148387
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 cacggcgccggcgcctacatc 26 ||||||||||||||||||||| Sbjct: 192018 cacggcgccggcgcctacatc 191998
>gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosome 5, complete sequence Length = 194519 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 433 cagagcagcaagccattgagtcagt 457 |||||||||||| |||||||||||| Sbjct: 96340 cagagcagcaagacattgagtcagt 96316
>dbj|AK050815.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030021M05 product:unclassifiable, full insert sequence Length = 2638 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 433 cagagcagcaagccattgagtcagt 457 |||||||||||| |||||||||||| Sbjct: 753 cagagcagcaagacattgagtcagt 777
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cgacgacatcggcaacctcat 46 ||||||||||||||||||||| Sbjct: 789138 cgacgacatcggcaacctcat 789118
>emb|AL954848.9| Zebrafish DNA sequence from clone CH211-281G7, complete sequence Length = 170178 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 461 caagagcctctgctggaagaagatc 485 |||||||||||| |||||||||||| Sbjct: 63378 caagagcctctgatggaagaagatc 63354
>ref|NM_103049.2| Arabidopsis thaliana unknown protein AT1G33170 mRNA, complete cds Length = 2240 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ccaccgatcaactggaagaa 391 |||||||||||||||||||| Sbjct: 1178 ccaccgatcaactggaagaa 1197
>ref|NM_129882.1| Arabidopsis thaliana unknown protein AT2G43200 mRNA, complete cds Length = 1836 Score = 40.1 bits (20), Expect = 7.0 Identities = 56/68 (82%) Strand = Plus / Plus Query: 306 gatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggatcttg 365 ||||| || |||||||| ||||||||||| || | ||||||| ||| |||||| | ||| Sbjct: 880 gatgggctttacttgatggaggtggatcgtgttttacgtcctgagggatactgggtgttg 939 Query: 366 tccggacc 373 || ||||| Sbjct: 940 tctggacc 947
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cggatccatccgcaccgccc 78 |||||||||||||||||||| Sbjct: 15585449 cggatccatccgcaccgccc 15585468
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cgatcaactggaagaagcac 395 |||||||||||||||||||| Sbjct: 1795898 cgatcaactggaagaagcac 1795917
>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence Length = 115079 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cggatccatccgcaccgccc 78 |||||||||||||||||||| Sbjct: 85000 cggatccatccgcaccgccc 85019
>gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete sequence Length = 38247 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gcaccgccctcgacaccggc 89 |||||||||||||||||||| Sbjct: 37293 gcaccgccctcgacaccggc 37312
>gb|AY046944.1| Mesocricetus auratus retinoic acid receptor beta-2 mRNA, complete cds Length = 2742 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 ccaagagcctctgctggaag 479 |||||||||||||||||||| Sbjct: 1503 ccaagagcctctgctggaag 1522
>gb|AY347479.1| Chlamydomonas reinhardtii NADH:ubiquinone oxidoreductase 51 kD subunit mRNA, complete cds Length = 2153 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 acggcgccggcgcctacatc 26 |||||||||||||||||||| Sbjct: 747 acggcgccggcgcctacatc 766
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 gccggcgcctacatcgacgacatc 35 |||||||||||||| ||||||||| Sbjct: 281184 gccggcgcctacatggacgacatc 281161
>gb|AC107294.7| Homo sapiens 3 BAC RP11-329B9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193421 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 tggaagaagatcaaggaggt 493 |||||||||||||||||||| Sbjct: 155420 tggaagaagatcaaggaggt 155439
>gb|BT009665.1| Arabidopsis thaliana At1g33170 gene, complete cds Length = 1920 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ccaccgatcaactggaagaa 391 |||||||||||||||||||| Sbjct: 1000 ccaccgatcaactggaagaa 1019
>gb|AY140083.1| Arabidopsis thaliana unknown protein (At1g33170) mRNA, complete cds Length = 2234 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ccaccgatcaactggaagaa 391 |||||||||||||||||||| Sbjct: 1177 ccaccgatcaactggaagaa 1196
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggtgcagttcgcgctggaac 195 |||||||||||||||||||| Sbjct: 4726416 ggtgcagttcgcgctggaac 4726397
>gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8 map CIC10F02, complete sequence Length = 45714 Score = 40.1 bits (20), Expect = 7.0 Identities = 56/68 (82%) Strand = Plus / Minus Query: 306 gatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggatcttg 365 ||||| || |||||||| ||||||||||| || | ||||||| ||| |||||| | ||| Sbjct: 4657 gatgggctttacttgatggaggtggatcgtgttttacgtcctgagggatactgggtgttg 4598 Query: 366 tccggacc 373 || ||||| Sbjct: 4597 tctggacc 4590
>gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence Length = 90283 Score = 40.1 bits (20), Expect = 7.0 Identities = 56/68 (82%) Strand = Plus / Plus Query: 306 gatggcctgtacttgattgaggtggatcgcattcttcgtcctgggggctactggatcttg 365 ||||| || |||||||| ||||||||||| || | ||||||| ||| |||||| | ||| Sbjct: 48399 gatgggctttacttgatggaggtggatcgtgttttacgtcctgagggatactgggtgttg 48458 Query: 366 tccggacc 373 || ||||| Sbjct: 48459 tctggacc 48466
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cgacgacatcggcaacctca 45 |||||||||||||||||||| Sbjct: 18321628 cgacgacatcggcaacctca 18321647
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cggatccatccgcaccgccc 78 |||||||||||||||||||| Sbjct: 15579983 cggatccatccgcaccgccc 15580002
>gb|AC027035.5|AC027035 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence Length = 81609 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ccaccgatcaactggaagaa 391 |||||||||||||||||||| Sbjct: 5082 ccaccgatcaactggaagaa 5101
>gb|AC021045.2|AC021045 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence Length = 90632 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ccaccgatcaactggaagaa 391 |||||||||||||||||||| Sbjct: 61346 ccaccgatcaactggaagaa 61365
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cgacgacatcggcaacctca 45 |||||||||||||||||||| Sbjct: 36364 cgacgacatcggcaacctca 36383
>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence Length = 184026 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 acatcggcaacctcatcccc 50 |||||||||||||||||||| Sbjct: 61412 acatcggcaacctcatcccc 61431
>dbj|AK110348.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-G12, full insert sequence Length = 929 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cgacgacatcggcaacctca 45 |||||||||||||||||||| Sbjct: 584 cgacgacatcggcaacctca 603
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cgccggcgcctacatcgacg 30 |||||||||||||||||||| Sbjct: 1815581 cgccggcgcctacatcgacg 1815562 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,239,086 Number of Sequences: 3902068 Number of extensions: 3239086 Number of successful extensions: 75132 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 74059 Number of HSP's gapped (non-prelim): 1068 length of query: 520 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 497 effective length of database: 17,143,297,704 effective search space: 8520218958888 effective search space used: 8520218958888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
