ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62n21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1187 bits (599), Expect = 0.0 Identities = 615/619 (99%), Gaps = 1/619 (0%) Strand = Plus / Plus Query: 1 gcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctg 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 90 gcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctg 148 Query: 61 ctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 ctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaaga 208 Query: 121 agctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 agctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaaca 268 Query: 181 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 328 Query: 241 gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 388 Query: 301 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 actcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacg 448 Query: 361 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 agtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctaca 508 Query: 421 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 tcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgc 568 Query: 481 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 ccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 628 Query: 541 tccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggag 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 tccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggag 688 Query: 601 agctggagagtgggaacgc 619 ||||||||||||||||||| Sbjct: 689 agctggagagtgggaacgc 707
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 1066 bits (538), Expect = 0.0 Identities = 592/610 (97%) Strand = Plus / Plus Query: 10 cgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttct 69 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 18 cgcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttct 77 Query: 70 cctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaaga 129 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 cctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaaga 137 Query: 130 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacag 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 138 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacgg 197 Query: 190 tcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 249 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 tcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 257 Query: 250 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctct 309 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 258 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctct 317 Query: 310 tccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtca 369 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 318 tccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgtca 377 Query: 370 gccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctg 429 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gccagggactcaagaagtacgacttcgacaacaccatgggaggcttctacatcgctcctg 437 Query: 430 ctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatca 489 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 438 ctttcatggacaagcttgttgtccatctctccaagaacttcatgaccctgcccaacatca 497 Query: 490 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 549 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 498 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatccttccagtgtg 557 Query: 550 agcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggaga 609 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 558 agcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccggagagctggaga 617 Query: 610 gtgggaacgc 619 |||| ||||| Sbjct: 618 gtggcaacgc 627
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 872 bits (440), Expect = 0.0 Identities = 449/452 (99%) Strand = Plus / Plus Query: 168 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 360 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 420 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 |||||||||||||||||||||||||||||||| Sbjct: 421 atgagtgccggagagctggagagtgggaacgc 452
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Plus Query: 89 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 149 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 209 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 269 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 328 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 329 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 389 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 449 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 491 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 408 bits (206), Expect = e-111 Identities = 335/378 (88%) Strand = Plus / Plus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 353 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 412 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 473 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 532 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238 Query: 533 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 592 || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3239 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 3298 Query: 593 tgccggagagctggagag 610 ||||| ||||||||||| Sbjct: 3299 cgccggtgagctggagag 3316 Score = 174 bits (88), Expect = 2e-40 Identities = 88/88 (100%) Strand = Plus / Plus Query: 490 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 550 agcttgtgttcgccaagatgggcatcaa 577 |||||||||||||||||||||||||||| Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157 Score = 163 bits (82), Expect = 8e-37 Identities = 89/90 (98%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 1 gcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctg 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 5310 gcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctg 5368 Query: 61 ctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||||| Sbjct: 5369 ctgccttctcctccaccgtcggggctccgg 5398 Score = 83.8 bits (42), Expect = 6e-13 Identities = 42/42 (100%) Strand = Plus / Plus Query: 578 ccccatcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 6408 ccccatcatgatgagtgccggagagctggagagtgggaacgc 6449
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 563 bits (284), Expect = e-157 Identities = 365/392 (93%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 557 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 616 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||||||||||||||||||||| || ||||| Sbjct: 617 atgagtgccggagagctggagagcggcaacgc 648 Score = 228 bits (115), Expect = 2e-56 Identities = 139/147 (94%) Strand = Plus / Plus Query: 50 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 109 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 76 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135 Query: 110 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 169 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195 Query: 170 caaggccaacaggttcacagtcatggc 196 |||||||||||||||||| |||||||| Sbjct: 196 caaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 543 bits (274), Expect = e-151 Identities = 362/392 (92%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 547 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 606 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||||||||||||||||||||| || ||||| Sbjct: 607 atgagtgccggagagctggagagcggcaacgc 638 Score = 222 bits (112), Expect = 1e-54 Identities = 138/147 (93%) Strand = Plus / Plus Query: 50 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 109 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| Sbjct: 66 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125 Query: 110 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 169 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185 Query: 170 caaggccaacaggttcacagtcatggc 196 |||||||||||||||||| |||||||| Sbjct: 186 caaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 484 bits (244), Expect = e-133 Identities = 355/392 (90%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 504 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 563 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||||||||||||||| || ||||| Sbjct: 564 atgagcgccggagagctggagagcggcaacgc 595 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 484 bits (244), Expect = e-133 Identities = 355/392 (90%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 541 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 600 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||||||||||||||| || ||||| Sbjct: 601 atgagcgccggagagctggagagcggcaacgc 632 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 484 bits (244), Expect = e-133 Identities = 355/392 (90%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 540 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 599 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||||||||||||||| || ||||| Sbjct: 600 atgagcgccggagagctggagagcggcaacgc 631 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 484 bits (244), Expect = e-133 Identities = 355/392 (90%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 324 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 383 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||||||||||||||| || ||||| Sbjct: 384 atgagcgccggagagctggagagcggcaacgc 415
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 484 bits (244), Expect = e-133 Identities = 355/392 (90%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 545 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 604 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||||||||||||||| || ||||| Sbjct: 605 atgagcgccggagagctggagagcggcaacgc 636 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 484 bits (244), Expect = e-133 Identities = 355/392 (90%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 539 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 598 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||||||||||||||| || ||||| Sbjct: 599 atgagcgccggagagctggagagcggcaacgc 630 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 476 bits (240), Expect = e-131 Identities = 354/392 (90%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 552 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 611 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||||||||||||||| || ||||| Sbjct: 612 atgagcgccggagagctggagagcggcaacgc 643 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 474 bits (239), Expect = e-130 Identities = 347/383 (90%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 512 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 571 Query: 588 atgagtgccggagagctggagag 610 ||||| ||||||||||||||||| Sbjct: 572 atgagcgccggagagctggagag 594 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 418 bits (211), Expect = e-114 Identities = 343/387 (88%) Strand = Plus / Plus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 353 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 412 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 473 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 532 ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| || || Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacaggg 516 Query: 533 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 592 || || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 517 caagtcgttccagtgcgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 576 Query: 593 tgccggagagctggagagtgggaacgc 619 ||||||||||||||||| || ||||| Sbjct: 577 cgccggagagctggagagcggcaacgc 603 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 53 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 112 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 113 cgggaagaagctcaagaagcagg 135 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 408 bits (206), Expect = e-111 Identities = 335/378 (88%) Strand = Plus / Plus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 352 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 353 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 412 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 473 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 532 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669 Query: 533 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 592 || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 670 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 729 Query: 593 tgccggagagctggagag 610 ||||| ||||||||||| Sbjct: 730 cgccggtgagctggagag 747
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 349 bits (176), Expect = 7e-93 Identities = 245/268 (91%) Strand = Plus / Plus Query: 352 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 411 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 412 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 471 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 472 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 531 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 532 gaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatga 591 ||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct: 507 gaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatgatga 566 Query: 592 gtgccggagagctggagagtgggaacgc 619 | ||||||||||||||||| || ||||| Sbjct: 567 gcgccggagagctggagagcggcaacgc 594 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 52 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 111 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 112 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 171 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 172 aggccaacaggttca 186 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 288 aagggcatcgtggactcgctcttccaggc 316 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 285 bits (144), Expect = 8e-74 Identities = 330/392 (84%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| ||||| || ||||| || ||||||||||||||||||| |||||||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcacccccatcatg 572 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||| ||||||||||| || ||||| Sbjct: 573 atgagcgccggcgagctggagagcggcaacgc 604 Score = 91.7 bits (46), Expect = 3e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 54 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 107 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 108 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 164 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 165 agctcca 171 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 285 bits (144), Expect = 8e-74 Identities = 303/356 (85%) Strand = Plus / Plus Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 383 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 384 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 443 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 444 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 503 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 504 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 563 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 534 Query: 564 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| Sbjct: 535 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgc 590
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 285 bits (144), Expect = 8e-74 Identities = 303/356 (85%) Strand = Plus / Plus Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 383 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 384 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 443 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 444 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 503 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 504 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 563 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 397 Query: 564 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| Sbjct: 398 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgc 453
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 278 bits (140), Expect = 2e-71 Identities = 302/356 (84%) Strand = Plus / Plus Query: 264 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 323 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 324 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 383 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 384 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 443 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 444 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 503 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 504 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 563 |||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||| Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaacttgtgttcgcc 427 Query: 564 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| Sbjct: 428 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgc 483
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 386 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 446 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 505 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 506 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 565 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 109256 Query: 566 gatgggcatcaa 577 |||||| ||||| Sbjct: 109255 gatggggatcaa 109244 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 348 ctcagctcctacgagtacgtcagccaggg 376 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 99 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 159 ggcaagagctccaaggccaacaggttca 186 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 52 agatggctgctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 578 ccccatcatgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 109158 ccccatcatgatgagcgccggagagctggagagcggcaacgc 109117 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 540 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 577 ||||||||||| || || |||||||||||||| ||||| Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 386 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 446 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 505 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 506 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 565 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 31133 Query: 566 gatgggcatcaa 577 |||||| ||||| Sbjct: 31132 gatggggatcaa 31121 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 348 ctcagctcctacgagtacgtcagccaggg 376 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 99 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 159 ggcaagagctccaaggccaacaggttca 186 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 52 agatggctgctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 578 ccccatcatgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 31035 ccccatcatgatgagcgccggagagctggagagcggcaacgc 30994 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 540 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 577 ||||||||||| || || |||||||||||||| ||||| Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 386 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 446 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 505 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 506 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 565 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28304395 Query: 566 gatgggcatcaa 577 |||||| ||||| Sbjct: 28304394 gatggggatcaa 28304383 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 348 ctcagctcctacgagtacgtcagccaggg 376 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 99 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 159 ggcaagagctccaaggccaacaggttca 186 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 52 agatggctgctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 578 ccccatcatgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 28304297 ccccatcatgatgagcgccggagagctggagagcggcaacgc 28304256 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 540 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 577 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 386 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 446 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 505 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 506 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 565 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28286844 Query: 566 gatgggcatcaa 577 |||||| ||||| Sbjct: 28286843 gatggggatcaa 28286832 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 348 ctcagctcctacgagtacgtcagccaggg 376 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 233 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 293 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 343 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 99 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 158 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 159 ggcaagagctccaaggccaacaggttca 186 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 52 agatggctgctgccttctcctccaccgtcggggctccgg 90 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 578 ccccatcatgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 28286746 ccccatcatgatgagcgccggagagctggagagcggcaacgc 28286705 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 540 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 577 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 242 bits (122), Expect = 1e-60 Identities = 320/386 (82%) Strand = Plus / Plus Query: 234 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 293 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 294 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 353 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 354 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 413 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 ||||| || ||||| ||| | || || ||||||||||| ||||||||||| ||||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579 Query: 534 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 593 ||||| ||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct: 580 aaatctttccaatgtgagcttgtctttgccaagatgggaatcaaccccattatgatgagt 639 Query: 594 gccggagagctggagagtgggaacgc 619 |||||||| |||| ||||||||||| Sbjct: 640 gccggagaattggaaagtgggaacgc 665
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 226 bits (114), Expect = 7e-56 Identities = 320/392 (81%) Strand = Plus / Plus Query: 228 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 287 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 288 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 347 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 348 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 407 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 408 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 467 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 468 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 527 |||||||||||||| ||||||||| | || |||||| |||||||| ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512 Query: 528 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 587 || |||||||| ||||| || ||||| || ||||||||||||||||||| |||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcannnnnatcatg 572 Query: 588 atgagtgccggagagctggagagtgggaacgc 619 ||||| ||||| ||||||||||| || ||||| Sbjct: 573 atgagcgccggcgagctggagagcggcaacgc 604 Score = 91.7 bits (46), Expect = 3e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 54 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 107 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 108 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 164 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 165 agctcca 171 ||||||| Sbjct: 141 agctcca 147
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 222 bits (112), Expect = 1e-54 Identities = 196/224 (87%) Strand = Plus / Plus Query: 396 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 455 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 456 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 515 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 516 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 575 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 435 Query: 576 aaccccatcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 436 aaccccatcatgatgagtgccggagaactggaaagtggaaacgc 479
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 736 atgatgagtgctggagagcttgagagtggaaacgc 770
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 736 atgatgagtgctggagagcttgagagtggaaacgc 770
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 765 atgatgagtgctggagagcttgagagtggaaacgc 799
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 647 atgatgagtgctggagagcttgagagtggaaacgc 681
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 561 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 562 atgatgagtgctggagagcttgagagtggaaacgc 596
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 650 atgatgagtgctggagagcttgagagtggaaacgc 684
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 638 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 639 atgatgagtgctggagagcttgagagtggaaacgc 673
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 647 atgatgagtgctggagagcttgagagtggaaacgc 681
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 650 atgatgagtgctggagagcttgagagtggaaacgc 684
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 220 bits (111), Expect = 4e-54 Identities = 234/275 (85%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 585 atgatgagtgccggagagctggagagtgggaacgc 619 ||||||||||| |||||||| |||||||| ||||| Sbjct: 765 atgatgagtgctggagagcttgagagtggaaacgc 799
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 214 bits (108), Expect = 3e-52 Identities = 195/224 (87%) Strand = Plus / Plus Query: 396 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 455 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 456 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 515 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 516 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 575 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 436 Query: 576 aaccccatcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 437 aaccccatcatgatgagtgccggagaactggaaagtggaaacgc 480
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 212 bits (107), Expect = 1e-51 Identities = 179/203 (88%) Strand = Plus / Plus Query: 417 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 476 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 477 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 536 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 537 tcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgcc 596 || ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 207 tccttccaatgtgaacttgtgttcgccaagatgggaatcaaccccatcatgatgagcgcc 266 Query: 597 ggagagctggagagtgggaacgc 619 || ||||||||||| || ||||| Sbjct: 267 ggtgagctggagagcggcaacgc 289
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 210 bits (106), Expect = 4e-51 Identities = 181/206 (87%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 534 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 593 ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 596 aaatctttccagtgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 655 Query: 594 gccggagagctggagagtgggaacgc 619 |||||||| ||||||| || ||||| Sbjct: 656 gccggagaattggagagcggcaacgc 681
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 206 bits (104), Expect = 6e-50 Identities = 212/248 (85%) Strand = Plus / Plus Query: 354 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 413 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 534 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 593 ||||||||||||||||| ||||| ||| |||||||| ||||||||||| ||||||||| Sbjct: 576 aaatcattccagtgtgaacttgtcttcagaaagatgggaatcaaccccattatgatgagt 635 Query: 594 gccggaga 601 || ||||| Sbjct: 636 gctggaga 643
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 200 bits (101), Expect = 4e-48 Identities = 197/229 (86%) Strand = Plus / Plus Query: 385 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 444 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 445 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 504 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 505 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 564 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 565 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgg 613 ||||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagctggaaagtgg 659
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 200 bits (101), Expect = 4e-48 Identities = 197/229 (86%) Strand = Plus / Plus Query: 385 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 444 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 445 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 504 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 505 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 564 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 565 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgg 613 ||||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagctggaaagtgg 659
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 198 bits (100), Expect = 2e-47 Identities = 166/188 (88%) Strand = Plus / Plus Query: 432 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 491 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 492 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 551 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 552 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 611 || || ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccggcgagctggagagc 201 Query: 612 gggaacgc 619 || ||||| Sbjct: 202 ggcaacgc 209
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 198 bits (100), Expect = 2e-47 Identities = 175/200 (87%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 534 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 593 || || ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 589 aagtctttccaatgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 648 Query: 594 gccggagagctggagagtgg 613 || |||||| |||| ||||| Sbjct: 649 gctggagagttggaaagtgg 668 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 234 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 292 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 196 bits (99), Expect = 6e-47 Identities = 165/187 (88%) Strand = Plus / Plus Query: 415 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 474 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 475 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 534 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 535 aatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtg 594 |||| ||||| ||||||||||||||||||||| | || || ||||||||||||||||||| Sbjct: 750 aatccttccaatgtgagcttgtgttcgccaagttaggaataaaccccatcatgatgagtg 809 Query: 595 ccggaga 601 ||||||| Sbjct: 810 ccggaga 816
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 192 bits (97), Expect = 9e-46 Identities = 196/229 (85%) Strand = Plus / Plus Query: 385 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 444 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 445 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 504 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 505 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 564 | ||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || |||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttgtctttgcca 615 Query: 565 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgg 613 ||||||| ||||||||||||||||||||||| |||||| |||| ||||| Sbjct: 616 agatgggaatcaaccccatcatgatgagtgctggagagttggaaagtgg 664
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 190 bits (96), Expect = 4e-45 Identities = 233/276 (84%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 345 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 404 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 405 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 464 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatct-ggggaggcaa 523 |||||| |||| ||||| ||||||||| | ||||| || ||||| ||| |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggc-tctcggggaggcaa 569 Query: 524 gggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccat 583 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| || Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaat 629 Query: 584 catgatgagtgccggagagctggagagtgggaacgc 619 |||||||||||| |||||||| |||||||| ||||| Sbjct: 630 catgatgagtgctggagagcttgagagtggaaacgc 665
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 182 bits (92), Expect = 9e-43 Identities = 164/188 (87%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 534 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 593 ||||| ||||||||||||||||| ||| |||||||| |||||||| || ||||||||| Sbjct: 546 aaatctttccagtgtgagcttgtcttcagaaagatgggaatcaaccctattatgatgagt 605 Query: 594 gccggaga 601 |||||||| Sbjct: 606 gccggaga 613
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 180 bits (91), Expect = 4e-42 Identities = 178/207 (85%) Strand = Plus / Plus Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 473 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 532 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 533 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 592 ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 634 taaatccttccaatgtgagcttgtgttcgccaagatgggaatcaaccccatcatgatgag 693 Query: 593 tgccggagagctggagagtgggaacgc 619 ||| ||||| |||| ||||| ||||| Sbjct: 694 tgcgggagaattggaaagtggaaacgc 720
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 180 bits (91), Expect = 4e-42 Identities = 166/191 (86%) Strand = Plus / Plus Query: 411 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 470 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 471 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 530 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 531 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatg 590 || ||||||||||| ||||||||||| ||| |||||||| ||||||||||| |||||| Sbjct: 554 ggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatg 613 Query: 591 agtgccggaga 601 ||||| ||||| Sbjct: 614 agtgctggaga 624
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 163 bits (82), Expect = 8e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 416 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 475 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 476 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 535 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275 Query: 536 atcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 595 || ||||| ||||||||||| || || || |||| |||||||| || ||||||||||| Sbjct: 276 gtccttccaatgtgagcttgtatttgcaaaattgggaatcaacccaattatgatgagtgc 335 Query: 596 cggagagctggagagtgg 613 ||| || ||||||||||| Sbjct: 336 cggtgaactggagagtgg 353
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 159 bits (80), Expect = 1e-35 Identities = 161/188 (85%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 474 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 533 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 534 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 593 ||||||||||| ||||||||||| ||| |||||||| |||||||| || ||||||||| Sbjct: 593 aaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagt 652 Query: 594 gccggaga 601 || ||||| Sbjct: 653 gctggaga 660
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 153 bits (77), Expect = 8e-34 Identities = 167/197 (84%) Strand = Plus / Plus Query: 423 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 482 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 483 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 542 ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || ||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604 Query: 543 cagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagag 602 ||||| |||||||| || ||||||||| | |||| ||| |||||||||||||||||||| Sbjct: 605 cagtgcgagcttgtctttgccaagatgagaatcagccctatcatgatgagtgccggagaa 664 Query: 603 ctggagagtgggaacgc 619 |||| ||||| ||||| Sbjct: 665 ttggaaagtggaaacgc 681 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 257 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 316 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 490 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 549 |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 550 agcttgtgttcgccaag 566 ||||||||||||||||| Sbjct: 2298 agcttgtgttcgccaag 2314 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 413 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 472 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 473 gaccctgcccaacatcaag 491 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 578 ccccatcatgatgagtgccggaga 601 |||||||||||||||||||||||| Sbjct: 2421 ccccatcatgatgagtgccggaga 2444
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 498 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 557 ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245 Query: 558 ttcgccaagatgggcatcaa 577 || ||||||||||| ||||| Sbjct: 246 tttgccaagatgggaatcaa 265 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 414 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 473 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 474 ac 475 || Sbjct: 66 ac 67 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 578 ccccatcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||||||||||||||||||| ||||||| || ||||| Sbjct: 467 ccccatcatgatgagtgccggagaattggagagcggcaacgc 508
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 93.7 bits (47), Expect = 7e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 523 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 582 |||| ||||||||||| ||||| ||||||||| || ||||||||||| |||||||||| Sbjct: 7 agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66 Query: 583 tcatgatgagtgccggagagctggagagtgg 613 ||||||||||||| |||||||| || ||||| Sbjct: 67 tcatgatgagtgctggagagcttgaaagtgg 97
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 522 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 581 ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |||| || Sbjct: 1 aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60 Query: 582 atcatgatgagtgccggaga 601 |||||||||||||||||||| Sbjct: 61 atcatgatgagtgccggaga 80
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 495 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 554 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 555 gtgttcgccaagatgggcatcaa 577 || | ||||||||||| ||||| Sbjct: 14673 gtcatggccaagatgggtatcaa 14651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 417 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 476 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 477 ctgcccaacatcaag 491 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 582 atcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||||||||| |||||||| |||||||| ||||| Sbjct: 14555 atcatgatgagtgctggagagcttgagagtggaaacgc 14518
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 465 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 524 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 525 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 584 ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccctatt 641 Query: 585 atgatgagtgc 595 ||||||||||| Sbjct: 642 atgatgagtgc 652
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 495 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 554 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 555 gtgttcgccaagatgggcatcaa 577 || | ||||||||||| ||||| Sbjct: 2610 gtcatggccaagatgggtatcaa 2632 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 417 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 476 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 477 ctgcccaacatcaag 491 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 582 atcatgatgagtgccggagagctggagagtgggaacgc 619 |||||||||||||| |||||||| |||||||| ||||| Sbjct: 2728 atcatgatgagtgctggagagcttgagagtggaaacgc 2765
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 489 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 548 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 549 gagcttgtgttcgccaagatgggcatca 576 |||||||| || ||||||||||| |||| Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 507 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 566 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874 Query: 567 atgggcatcaa 577 ||||||||||| Sbjct: 104873 atgggcatcaa 104863 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 582 atcatgatgagtgccggagagctggagagtgg 613 |||||||||||||| |||||||| || ||||| Sbjct: 104183 atcatgatgagtgctggagagctagaaagtgg 104152
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 507 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 566 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899 Query: 567 atgggcatcaa 577 ||||||||||| Sbjct: 83898 atgggcatcaa 83888 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 396 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 451 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 582 atcatgatgagtgccggagagctggagagtgg 613 |||||||||||||| |||||||| || ||||| Sbjct: 83208 atcatgatgagtgctggagagctagaaagtgg 83177
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 411 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 470 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 471 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 530 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 531 ggaaa 535 ||||| Sbjct: 1248 ggaaa 1252
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 460 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 519 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 520 gcaaggg 526 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 476 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 526 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ccgacgaccagcaggacatcacc 281 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 actcgctcttccaggcgcccac 322 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 gaagaagctcaagaagcaggtg 137 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA Length = 929 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 531 cagcacagagatggctgctgc 511
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA Length = 939 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 541 cagcacagagatggctgctgc 521
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA Length = 992 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 595 cagcacagagatggctgctgc 575
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA Length = 1318 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 932 cagcacagagatggctgctgc 912
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA Length = 1006 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 cagcacagagatggctgctgc 64 ||||||||||||||||||||| Sbjct: 609 cagcacagagatggctgctgc 589
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 catggcagcggagaacatcg 210 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 atctccgacgaccagcaggacatc 278 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gcagcggagaacatcgacga 214 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gcaagagctccaaggccaac 179 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctgccttctcctccaccgtc 80 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 catggcagcggagaacatcg 210 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctgctgccttctcctccacc 77 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctgctgccttctcctccacc 77 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctgctgccttctcctccacc 77 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gaagaagctcaagaagcagg 135 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 ttccagtgtgagcttgtgtt 559 |||||||||||||||||||| Sbjct: 97287 ttccagtgtgagcttgtgtt 97268
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 ggcttctacatcgctcctgctttc 434 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccagagggaagggcatcgtg 299 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gtccatctctccaaaaactt 469 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence Length = 177104 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 acagagatggctgctgcctt 67 |||||||||||||||||||| Sbjct: 121162 acagagatggctgctgcctt 121143
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gcaagagctccaaggccaac 179 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccagagggaagggcatcgtg 299 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 31 aaggtcgaccaagcagcacagagatggctgctgccttctc 70 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 caaggccaacaggttcacagtcat 193 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 cgatatctccgacgaccagc 270 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 (ENSANGG00000011813), partial mRNA Length = 1773 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 tcgccaagatgggcatcaac 578 |||||||||||||||||||| Sbjct: 641 tcgccaagatgggcatcaac 660
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 ggcttctacatcgctcctgctttc 434 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 caaggccaacaggttcacagtcat 193 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aagaagctcaagaagcaggt 136 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete sequences Length = 162128 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 31 aaggtcgaccaagcagcacagagatggctgctgccttctc 70 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 gagatggctgctgccttctcctcc 74 ||||||||||||||||||| |||| Sbjct: 472845 gagatggctgctgccttctgctcc 472822
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 ccctgcccaacatcaagatc 494 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cccacgggcgacggcacccacgag 341 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tggctgctgccttctcctcc 74 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,112,735 Number of Sequences: 3902068 Number of extensions: 5112735 Number of successful extensions: 95818 Number of sequences better than 10.0: 124 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95223 Number of HSP's gapped (non-prelim): 584 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
