ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63c16 |
|---|---|
| Clone Library Name | barley_pub |
>CREA_COCCA (Q9HFS2) DNA-binding protein creA (Carbon catabolite repressor)| Length = 430 Score = 35.0 bits (79), Expect = 0.19 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +2 Query: 341 TASSSNQRAPNMSAIGSDIRYQPGIHNDI-KYEPGTQPVDLHYSATGSGQAQGYSDQAHA 517 +A S +PN+S S Y PG+ ND+ Y G L S++ SG A+ A A Sbjct: 169 SAPGSQLGSPNVSPPHSFSNYSPGMSNDLAAYHQG----GLSNSSSPSGLARPMDLLADA 224 Query: 518 FSGLEAKPRSSSYSSPNNL 574 S LE +P S+SS ++L Sbjct: 225 ASRLEQRPGHISHSSRHHL 243
>RNH1_YEAST (Q04740) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 348 Score = 31.2 bits (69), Expect = 2.8 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = +2 Query: 80 MEEGSDYYVVRKGDMVAVYRSLNDCQAQICSSVSGPAASAYKGYCWSKEKAEYFSSHGLS 259 M ++Y VRKG +Y + N+C+ Q V G + YK + S E+A+ F + Sbjct: 1 MARQGNFYAVRKGRETGIYNTWNECKNQ----VDGYGGAIYKKFN-SYEQAKSFLGQPNT 55 Query: 260 NASY 271 ++Y Sbjct: 56 TSNY 59
>MYOD1_CHICK (P16075) Myoblast determination protein 1 homolog (MYOD1 homolog)| Length = 298 Score = 31.2 bits (69), Expect = 2.8 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 10/95 (10%) Frame = +2 Query: 326 TFQEITASSSNQRAPNMSAIGSDIRYQPGIHNDIK-YEPGTQPVDLHYS--ATGSGQAQG 496 T + T+++ NQR P + + + IRY + ++ E PV HYS + S Sbjct: 122 TLKRCTSTNPNQRLPKVEILRNAIRYIESLQALLREQEDAYYPVLEHYSGESDASSPRSN 181 Query: 497 YSDQAHAFSGLEAKPR-----SSSY--SSPNNLNH 580 SD +SG R SSY SPN+ H Sbjct: 182 CSDGMMEYSGPPCSSRRRNSYDSSYYTESPNDPKH 216
>MYOD1_COTJA (P21572) Myoblast determination protein 1 homolog (Myogenic factor| 1) Length = 297 Score = 31.2 bits (69), Expect = 2.8 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 10/95 (10%) Frame = +2 Query: 326 TFQEITASSSNQRAPNMSAIGSDIRYQPGIHNDIK-YEPGTQPVDLHYS--ATGSGQAQG 496 T + T+++ NQR P + + + IRY + ++ E PV HYS + S Sbjct: 123 TLKRCTSTNPNQRLPKVEILRNAIRYIESLQALLREQEDAYYPVLEHYSGESDASSPRSN 182 Query: 497 YSDQAHAFSGLEAKPR-----SSSY--SSPNNLNH 580 SD +SG R SSY SPN+ H Sbjct: 183 CSDGMMEYSGPPCSSRRRNSYDSSYYTESPNDPKH 217
>RNH1_BACHD (Q9KEI9) Ribonuclease H (EC 3.1.26.4) (RNase H)| Length = 196 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = +2 Query: 92 SDYYVVRKGDMVAVYRSLNDCQAQICSSVSGPAASAYKGYCWSKEKAE 235 S YYVV G +Y S + C+AQ V G + +K Y SKE+AE Sbjct: 4 SKYYVVWNGRKPGIYTSWSACEAQ----VKGYTGAKFKSYP-SKEEAE 46
>MRC2_RAT (Q4TU93) Macrophage mannose receptor 2 precursor (Endocytic receptor| 180) (CD280 antigen) Length = 1480 Score = 30.4 bits (67), Expect = 4.7 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +1 Query: 469 CHWIWSSSRLLRPGAC 516 C+WI SSS L RPGAC Sbjct: 1367 CYWIQSSSGLWRPGAC 1382
>MRC2_MOUSE (Q64449) Macrophage mannose receptor 2 precursor (Lectin lambda)| (CD280 antigen) Length = 1479 Score = 30.4 bits (67), Expect = 4.7 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +1 Query: 469 CHWIWSSSRLLRPGAC 516 C+WI SSS L RPGAC Sbjct: 1367 CYWIQSSSGLWRPGAC 1382
>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) Length = 1575 Score = 30.0 bits (66), Expect = 6.2 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 1/148 (0%) Frame = +2 Query: 179 SGPAASAYKGYCWSKEKAEYFSSHGLSNASYTISAAELR-EDLLGALVPCTFQEITASSS 355 SG + S K + + HGLS+ S S+ +++ + +L+ + + S S Sbjct: 1140 SGSSQSKNSSQTGGKPGSSPITKHGLSSGS---SSTKMKPQGKPSSLMNPSISKPNISPS 1196 Query: 356 NQRAPNMSAIGSDIRYQPGIHNDIKYEPGTQPVDLHYSATGSGQAQGYSDQAHAFSGLEA 535 + R P GSD P +K PGT P S SG + + + SG+++ Sbjct: 1197 HSRPPG----GSDKLASP-----MKPVPGTPPSSKAKSPISSGSSGSHVSGTSSSSGMKS 1247 Query: 536 KPRSSSYSSPNNLNHTGAFDAQPVSKQY 619 S+S S + + P S + Sbjct: 1248 SSGSASSGSVSQKTPPASNSCTPSSSSF 1275
>SCOT_PIG (Q29551) Succinyl-CoA:3-ketoacid-coenzyme A transferase 1,| mitochondrial precursor (EC 2.8.3.5) (Somatic-type succinyl CoA:3-oxoacid CoA-transferase) (Scot-S) Length = 520 Score = 30.0 bits (66), Expect = 6.2 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 21/82 (25%) Frame = +2 Query: 191 ASAYK-GYCWSKEKAEYFSSHGLSNASYTISAAE--------------------LREDLL 307 ASAY+ G WS+ A YFS+ + + A E + E+L+ Sbjct: 15 ASAYRSGGAWSQGCAGYFSTSTRRHTKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLI 74 Query: 308 GALVPCTFQEITASSSNQRAPN 373 GAL+ +E+TA S+N N Sbjct: 75 GALLKTGVKELTAVSNNAGVDN 96
>FLGH_SHEON (Q8ECA1) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 224 Score = 29.6 bits (65), Expect = 8.0 Identities = 18/81 (22%), Positives = 38/81 (46%) Frame = +2 Query: 284 AELREDLLGALVPCTFQEITASSSNQRAPNMSAIGSDIRYQPGIHNDIKYEPGTQPVDLH 463 +++R +G ++ +E A+ + + A N GSD+ P G P+DL Sbjct: 59 SDIRAHKVGDIITIVLKE--ATQAKKSAGNQIKKGSDMTLDPVYAGGSNLSLGGIPLDLR 116 Query: 464 YSATGSGQAQGYSDQAHAFSG 526 Y + + + + +DQ+++ G Sbjct: 117 YKDSMNTKRESDADQSNSLDG 137
>CEBPB_MOUSE (P28033) CCAAT/enhancer-binding protein beta (C/EBP beta)| (Interleukin-6-dependent-binding protein) (IL-6DBP) (Liver-enriched transcriptional activator) (LAP) (AGP/EBP) Length = 296 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 425 IKYEPGTQPVDLHYSATGSGQAQGYSDQAHAFSGLEAKPRSSSYS 559 +K EPG +P D + A G+ A+ G +A P SS S Sbjct: 132 LKAEPGFEPADCKRADDAPAMAAGFPFALRAYLGYQATPSGSSGS 176
>41_BOVIN (Q9N179) Protein 4.1 (Band 4.1) (P4.1) (4.1R)| Length = 617 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 121 HGCRLQKFK*LPGANLLFGIWSCCKCLQGLLLEQRKGRILFFTWTK 258 +G L K K L G +++ G+ C GLL+ + K RI F W K Sbjct: 187 YGVDLHKAKDLEGVDIILGV-----CSSGLLVYKEKLRINRFPWPK 227
>CEBPB_RAT (P21272) CCAAT/enhancer-binding protein beta (C/EBP beta)| (Interleukin-6-dependent-binding protein) (IL-6DBP) (Liver-enriched transcriptional activator) (LAP) (Silencer factor B) (SF-B) (C/EBP-related protein 2) Length = 297 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 425 IKYEPGTQPVDLHYSATGSGQAQGYSDQAHAFSGLEAKPRSSSYS 559 +K EPG +P D + A G+ A+ G +A P SS S Sbjct: 133 LKAEPGFEPADCKRADDAPAMAAGFPFALRAYLGYQATPSGSSGS 177
>BYR4_SCHPO (Q10951) Protein byr4| Length = 665 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 Query: 356 NQRAPNMSAIGSDIRYQPGIHNDIKYEP 439 NQ+ P +S S I YQP +H D KY P Sbjct: 253 NQKHPYIS---STISYQPNVHQDAKYYP 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,135,865 Number of Sequences: 219361 Number of extensions: 2162239 Number of successful extensions: 5049 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4880 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5046 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
