ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63c16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
2dbj|AK071427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
3ref|NM_196842.1| Oryza sativa (japonica cultivar-group) putative... 200 4e-48
4gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 gen... 121 3e-24
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
7emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chr... 48 0.036
8emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chr... 44 0.57
9gb|AC104839.5| Homo sapiens BAC clone RP13-868N24 from 2, comple... 44 0.57
10gb|AC149223.2| Mus musculus BAC clone RP23-203K1 from chromosome... 42 2.2
11gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosom... 42 2.2
12gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosom... 42 2.2
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
14dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
15dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16emb|AL163642.4|CNS01RIM Human chromosome 14 DNA sequence BAC R-6... 42 2.2
17gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, compl... 42 2.2
18gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, co... 42 2.2
19gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, comple... 42 2.2
20emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chr... 42 2.2
21gb|AC158953.8| Mus musculus chromosome 3, clone RP23-437C24, com... 40 8.8
22gb|AC164077.5| Mus musculus chromosome 3, clone RP24-352M15, com... 40 8.8
23gb|AC135359.2| Mus musculus BAC clone RP24-209E17 from chromosom... 40 8.8
24gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome... 40 8.8
25gb|AC124720.3| Mus musculus BAC clone RP23-387F14 from chromosom... 40 8.8
26emb|CR936538.5| Wallaby DNA sequence from clone MEKBa-43B7, comp... 40 8.8
27emb|AL162414.11| Human DNA sequence from clone RP11-202G18 on ch... 40 8.8
28gb|AC124037.5| Mus Musculus chromosome 4 BAC, clone CT7-104L5 st... 40 8.8
29gb|AC111062.13| Mus musculus chromosome 3, clone RP24-100J21, co... 40 8.8
30emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chro... 40 8.8
31emb|CR545472.6| Zebrafish DNA sequence from clone DKEYP-32B1 in ... 40 8.8
32gb|AC087490.6| Homo sapiens chromosome 15, clone RP11-810H22, co... 40 8.8
33dbj|AK097500.1| Homo sapiens cDNA FLJ40181 fis, clone TESTI2018178 40 8.8
34gb|AC103750.2| Homo sapiens chromosome 15, clone RP11-494F2, com... 40 8.8
35gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4... 40 8.8
36gb|AC034303.14| Homo sapiens chromosome 17, clone RP11-648P8, co... 40 8.8
37gb|AF322142.1|AF322142 Chionachne koenigii teosinte branched1 pr... 40 8.8
38emb|AL928869.11| Mouse DNA sequence from clone RP23-393F9 on chr... 40 8.8
39gb|AC002347.3| Homo sapiens chromosome 17, clone CTC-297N7, comp... 40 8.8
40emb|AL929123.9| Mouse DNA sequence from clone RP23-328K3 on chro... 40 8.8
41emb|AL672274.7| Mouse DNA sequence from clone RP23-351G20 on chr... 40 8.8
42emb|AL671866.8| Mouse DNA sequence from clone RP23-59L24 on chro... 40 8.8
43emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chro... 40 8.8 
>dbj|AK101347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034L02, full
           insert sequence
          Length = 1705

 Score =  218 bits (110), Expect = 2e-53
 Identities = 236/278 (84%)
 Strand = Plus / Plus

                                                                       
Query: 80  atggaagaaggcagtgactattatgttgttaggaaaggggacatggttgccgtttacaga 139
           |||||||| |||||  |||||||| |||| ||||| ||||| ||||| || ||||||| |
Sbjct: 216 atggaagagggcagcaactattatcttgtcaggaagggggagatggtagctgtttacaaa 275

                                                                       
Query: 140 agtttaaatgattgccaggcgcaaatttgctcttcggtatctggtcctgctgcaagtgcc 199
             |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 276 tctttaaatgattgccaggctcaaatttgctcatcggtatctggtcctgctgcaagtgcc 335

                                                                       
Query: 200 tacaagggttactgctggagcaaagaaaaggcagaatacttttcttcacatggactaagc 259
           ||||||||| |||  ||||||| ||||||||  |||||| | ||||| | |||  |||| 
Sbjct: 336 tacaagggtaactcttggagcagagaaaaggaggaatacctctcttcgcgtgggttaagt 395

                                                                       
Query: 260 aatgcttcgtatacaatcagtgcagctgaacttagggaagatttattgggtgcccttgtg 319
           |||||| | |||  ||||| |||||||||||||||||||||| |||| ||| ||||| | 
Sbjct: 396 aatgctacatatgtaatcaatgcagctgaacttagggaagatctatttggtacccttatc 455

                                                 
Query: 320 ccctgcactttccaggagataactgctagtagttcaaa 357
           ||||| ||||| ||||||||||||| |  |||||||||
Sbjct: 456 ccctgtacttttcaggagataactgtttctagttcaaa 493



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 591 ttgatgcacaacctgtctcaaaacaatatatggtatg 627
           |||||||||||||| |||| |||||||||||||||||
Sbjct: 727 ttgatgcacaacctctctcgaaacaatatatggtatg 763
to top
>dbj|AK071427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098H16, full
           insert sequence
          Length = 1556

 Score =  218 bits (110), Expect = 2e-53
 Identities = 236/278 (84%)
 Strand = Plus / Plus

                                                                       
Query: 80  atggaagaaggcagtgactattatgttgttaggaaaggggacatggttgccgtttacaga 139
           |||||||| |||||  |||||||| |||| ||||| ||||| ||||| || ||||||| |
Sbjct: 242 atggaagagggcagcaactattatcttgtcaggaagggggagatggtagctgtttacaaa 301

                                                                       
Query: 140 agtttaaatgattgccaggcgcaaatttgctcttcggtatctggtcctgctgcaagtgcc 199
             |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 302 tctttaaatgattgccaggctcaaatttgctcatcggtatctggtcctgctgcaagtgcc 361

                                                                       
Query: 200 tacaagggttactgctggagcaaagaaaaggcagaatacttttcttcacatggactaagc 259
           ||||||||| |||  ||||||| ||||||||  |||||| | ||||| | |||  |||| 
Sbjct: 362 tacaagggtaactcttggagcagagaaaaggaggaatacctctcttcgcgtgggttaagt 421

                                                                       
Query: 260 aatgcttcgtatacaatcagtgcagctgaacttagggaagatttattgggtgcccttgtg 319
           |||||| | |||  ||||| |||||||||||||||||||||| |||| ||| ||||| | 
Sbjct: 422 aatgctacatatgtaatcaatgcagctgaacttagggaagatctatttggtacccttatc 481

                                                 
Query: 320 ccctgcactttccaggagataactgctagtagttcaaa 357
           ||||| ||||| ||||||||||||| |  |||||||||
Sbjct: 482 ccctgtacttttcaggagataactgtttctagttcaaa 519



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 591 ttgatgcacaacctgtctcaaaacaatatatggtatg 627
           |||||||||||||| |||| |||||||||||||||||
Sbjct: 753 ttgatgcacaacctctctcgaaacaatatatggtatg 789
to top
>ref|NM_196842.1| Oryza sativa (japonica cultivar-group) putative RNase
           (OSJNBb0011A08.1), mRNA
          Length = 1411

 Score =  200 bits (101), Expect = 4e-48
 Identities = 218/257 (84%)
 Strand = Plus / Plus

                                                                       
Query: 80  atggaagaaggcagtgactattatgttgttaggaaaggggacatggttgccgtttacaga 139
           |||||||| |||||  |||||||| |||| ||||| ||||| ||||| || ||||||| |
Sbjct: 1   atggaagagggcagcaactattatcttgtcaggaagggggagatggtagctgtttacaaa 60

                                                                       
Query: 140 agtttaaatgattgccaggcgcaaatttgctcttcggtatctggtcctgctgcaagtgcc 199
             |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 61  tctttaaatgattgccaggctcaaatttgctcatcggtatctggtcctgctgcaagtgcc 120

                                                                       
Query: 200 tacaagggttactgctggagcaaagaaaaggcagaatacttttcttcacatggactaagc 259
           ||||||||| |||  ||||||| ||||||||  |||||| | ||||| | |||  |||| 
Sbjct: 121 tacaagggtaactcttggagcagagaaaaggaggaatacctctcttcgcgtgggttaagt 180

                                                                       
Query: 260 aatgcttcgtatacaatcagtgcagctgaacttagggaagatttattgggtgcccttgtg 319
           |||||| | |||  ||||| |||||||||||||||||||||| |||| ||| ||||| | 
Sbjct: 181 aatgctacatatgtaatcaatgcagctgaacttagggaagatctatttggtacccttatc 240

                            
Query: 320 ccctgcactttccagga 336
           ||||| ||||| |||||
Sbjct: 241 ccctgtacttttcagga 257



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 591 ttgatgcacaacctgtctcaaaacaatatatggtatg 627
           |||||||||||||| |||| |||||||||||||||||
Sbjct: 410 ttgatgcacaacctctctcgaaacaatatatggtatg 446
to top
>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete
             sequence
          Length = 117157

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                         
Query: 175   ggtatctggtcctgctgcaagtgcctacaagggttactgctggagcaaagaaaaggcaga 234
             |||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||  ||
Sbjct: 30488 ggtatctggtcctgctgcaagtgcctacaagggtaactcttggagcagagaaaaggagga 30429

                                                                         
Query: 235   atacttttcttcacatggactaagcaatgcttcgtatacaatcagtgcagctgaacttag 294
             |||| | ||||| | |||  |||| |||||| | |||  ||||| |||||||||||||||
Sbjct: 30428 atacctctcttcgcgtgggttaagtaatgctacatatgtaatcaatgcagctgaacttag 30369

                                                      
Query: 295   ggaagatttattgggtgcccttgtgccctgcactttccagg 335
             ||||||| |||| ||| ||||| | ||||| ||||| ||||
Sbjct: 30368 ggaagatctatttggtacccttatcccctgtacttttcagg 30328



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                         
Query: 80    atggaagaaggcagtgactattatgttgttaggaaaggggacatggttgccgtttacaga 139
             |||||||| |||||  |||||||| |||| ||||| ||||| ||||| || ||||||| |
Sbjct: 31171 atggaagagggcagcaactattatcttgtcaggaagggggagatggtagctgtttacaaa 31112

                                                     
Query: 140   agtttaaatgattgccaggcgcaaatttgctcttcggtat 179
               |||||||||||||||||| ||||||||||| |||||||
Sbjct: 31111 tctttaaatgattgccaggctcaaatttgctcatcggtat 31072



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 591   ttgatgcacaacctgtctcaaaacaatat 619
             |||||||||||||| |||| |||||||||
Sbjct: 29300 ttgatgcacaacctctctcgaaacaatat 29272
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 175      ggtatctggtcctgctgcaagtgcctacaagggttactgctggagcaaagaaaaggcaga 234
                |||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||  ||
Sbjct: 16327595 ggtatctggtcctgctgcaagtgcctacaagggtaactcttggagcagagaaaaggagga 16327654

                                                                            
Query: 235      atacttttcttcacatggactaagcaatgcttcgtatacaatcagtgcagctgaacttag 294
                |||| | ||||| | |||  |||| |||||| | |||  ||||| |||||||||||||||
Sbjct: 16327655 atacctctcttcgcgtgggttaagtaatgctacatatgtaatcaatgcagctgaacttag 16327714

                                                         
Query: 295      ggaagatttattgggtgcccttgtgccctgcactttccagg 335
                ||||||| |||| ||| ||||| | ||||| ||||| ||||
Sbjct: 16327715 ggaagatctatttggtacccttatcccctgtacttttcagg 16327755



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                            
Query: 80       atggaagaaggcagtgactattatgttgttaggaaaggggacatggttgccgtttacaga 139
                |||||||| |||||  |||||||| |||| ||||| ||||| ||||| || ||||||| |
Sbjct: 16326912 atggaagagggcagcaactattatcttgtcaggaagggggagatggtagctgtttacaaa 16326971

                                                        
Query: 140      agtttaaatgattgccaggcgcaaatttgctcttcggtat 179
                  |||||||||||||||||| ||||||||||| |||||||
Sbjct: 16326972 tctttaaatgattgccaggctcaaatttgctcatcggtat 16327011



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 591      ttgatgcacaacctgtctcaaaacaatat 619
                |||||||||||||| |||| |||||||||
Sbjct: 16328783 ttgatgcacaacctctctcgaaacaatat 16328811
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 175      ggtatctggtcctgctgcaagtgcctacaagggttactgctggagcaaagaaaaggcaga 234
                |||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||  ||
Sbjct: 16335836 ggtatctggtcctgctgcaagtgcctacaagggtaactcttggagcagagaaaaggagga 16335895

                                                                            
Query: 235      atacttttcttcacatggactaagcaatgcttcgtatacaatcagtgcagctgaacttag 294
                |||| | ||||| | |||  |||| |||||| | |||  ||||| |||||||||||||||
Sbjct: 16335896 atacctctcttcgcgtgggttaagtaatgctacatatgtaatcaatgcagctgaacttag 16335955

                                                         
Query: 295      ggaagatttattgggtgcccttgtgccctgcactttccagg 335
                ||||||| |||| ||| ||||| | ||||| ||||| ||||
Sbjct: 16335956 ggaagatctatttggtacccttatcccctgtacttttcagg 16335996



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                            
Query: 80       atggaagaaggcagtgactattatgttgttaggaaaggggacatggttgccgtttacaga 139
                |||||||| |||||  |||||||| |||| ||||| ||||| ||||| || ||||||| |
Sbjct: 16335153 atggaagagggcagcaactattatcttgtcaggaagggggagatggtagctgtttacaaa 16335212

                                                        
Query: 140      agtttaaatgattgccaggcgcaaatttgctcttcggtat 179
                  |||||||||||||||||| ||||||||||| |||||||
Sbjct: 16335213 tctttaaatgattgccaggctcaaatttgctcatcggtat 16335252



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 591      ttgatgcacaacctgtctcaaaacaatat 619
                |||||||||||||| |||| |||||||||
Sbjct: 16337024 ttgatgcacaacctctctcgaaacaatat 16337052
to top
>emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chromosome 2, complete
              sequence
          Length = 201232

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 526    gctggaagccaaaccaaggtcctc 549
              ||||||||||||||||||||||||
Sbjct: 169541 gctggaagccaaaccaaggtcctc 169564
to top
>emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chromosome 9 Contains the
             3' end of the gene for a novel protein (KIAA0515), the
             RNU62 gene for U62 small nucleolar RNA, a novel gene
             identical to the RNU62 gene, the POMT1 gene for
             protein-O-mannosyltransferase 1, a novel gene, the gene
             for uridine-cytidine kinase 1 (UCK1) and three CpG
             islands, complete sequence
          Length = 147492

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 138   gaagtttaaatgattgccaggc 159
             ||||||||||||||||||||||
Sbjct: 39183 gaagtttaaatgattgccaggc 39162
to top
>gb|AC104839.5| Homo sapiens BAC clone RP13-868N24 from 2, complete sequence
          Length = 38569

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 425   ataaaatatgagcctgggacac 446
             ||||||||||||||||||||||
Sbjct: 27542 ataaaatatgagcctgggacac 27521
to top
>gb|AC149223.2| Mus musculus BAC clone RP23-203K1 from chromosome 18, complete sequence
          Length = 202991

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 600    aacctgtctcaaaacaatata 620
              |||||||||||||||||||||
Sbjct: 171012 aacctgtctcaaaacaatata 170992
to top
>gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosome 18, complete
             sequence
          Length = 186798

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 600   aacctgtctcaaaacaatata 620
             |||||||||||||||||||||
Sbjct: 72485 aacctgtctcaaaacaatata 72465
to top
>gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosome 18, complete sequence
          Length = 205629

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 600    aacctgtctcaaaacaatata 620
              |||||||||||||||||||||
Sbjct: 196405 aacctgtctcaaaacaatata 196425
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 598    acaacctgtctcaaaacaatatatg 622
              ||||||||||||||||||| |||||
Sbjct: 534226 acaacctgtctcaaaacaacatatg 534250
to top
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0501G04
          Length = 156603

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 598   acaacctgtctcaaaacaatatatg 622
             ||||||||||||||||||| |||||
Sbjct: 12279 acaacctgtctcaaaacaacatatg 12303
to top
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0017C12
          Length = 135356

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 598    acaacctgtctcaaaacaatatatg 622
              ||||||||||||||||||| |||||
Sbjct: 130467 acaacctgtctcaaaacaacatatg 130491
to top
>emb|AL163642.4|CNS01RIM Human chromosome 14 DNA sequence BAC R-688D15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184037

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 323    tgcactttccaggagataactgcta 347
              ||||||||||||||||||| |||||
Sbjct: 181166 tgcactttccaggagataattgcta 181190
to top
>gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, complete sequence
          Length = 186243

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 596    gcacaacctgtctcaaaacaa 616
              |||||||||||||||||||||
Sbjct: 112341 gcacaacctgtctcaaaacaa 112321
to top
>gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, complete sequence
          Length = 212734

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 596    gcacaacctgtctcaaaacaa 616
              |||||||||||||||||||||
Sbjct: 107215 gcacaacctgtctcaaaacaa 107235
to top
>gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, complete sequence
          Length = 220247

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   agggttactgctggagcaaag 224
             |||||||||||||||||||||
Sbjct: 98743 agggttactgctggagcaaag 98763
to top
>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete
              sequence
          Length = 207901

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 529    ggaagccaaaccaaggtcctc 549
              |||||||||||||||||||||
Sbjct: 158669 ggaagccaaaccaaggtcctc 158649
to top
>gb|AC158953.8| Mus musculus chromosome 3, clone RP23-437C24, complete sequence
          Length = 204136

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  caaaccaaggtcctccagtt 554
            ||||||||||||||||||||
Sbjct: 3333 caaaccaaggtcctccagtt 3314
to top
>gb|AC164077.5| Mus musculus chromosome 3, clone RP24-352M15, complete sequence
          Length = 159925

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 535    caaaccaaggtcctccagtt 554
              ||||||||||||||||||||
Sbjct: 129927 caaaccaaggtcctccagtt 129908
to top
>gb|AC135359.2| Mus musculus BAC clone RP24-209E17 from chromosome 5, complete
            sequence
          Length = 199822

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 550  cagttattcctcaccaaata 569
            ||||||||||||||||||||
Sbjct: 9563 cagttattcctcaccaaata 9544
to top
>gb|AC134586.4| Mus musculus BAC clone RP23-304K3 from chromosome 9, complete sequence
          Length = 166474

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   gctggaagccaaaccaaggt 545
             ||||||||||||||||||||
Sbjct: 93011 gctggaagccaaaccaaggt 93030
to top
>gb|AC124720.3| Mus musculus BAC clone RP23-387F14 from chromosome 5, complete sequence
          Length = 193210

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   cagttattcctcaccaaata 569
             ||||||||||||||||||||
Sbjct: 49836 cagttattcctcaccaaata 49855
to top
>emb|CR936538.5| Wallaby DNA sequence from clone MEKBa-43B7, complete sequence
          Length = 115930

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   atataaaatatgagcctggg 442
             ||||||||||||||||||||
Sbjct: 18279 atataaaatatgagcctggg 18260
to top
>emb|AL162414.11| Human DNA sequence from clone RP11-202G18 on chromosome 9 Contains a
              novel gene, complete sequence
          Length = 176689

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    cgtttacagaagtttaaatg 149
              ||||||||||||||||||||
Sbjct: 121435 cgtttacagaagtttaaatg 121416
to top
>gb|AC124037.5| Mus Musculus chromosome 4 BAC, clone CT7-104L5 strain 129Sv ES cell
            line, Complete Sequence, complete sequence
          Length = 134412

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 526  gctggaagccaaaccaaggtcctc 549
            ||||||||||||||| ||||||||
Sbjct: 4397 gctggaagccaaacccaggtcctc 4420
to top
>gb|AC111062.13| Mus musculus chromosome 3, clone RP24-100J21, complete sequence
          Length = 214132

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 535    caaaccaaggtcctccagtt 554
              ||||||||||||||||||||
Sbjct: 147081 caaaccaaggtcctccagtt 147100
to top
>emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chromosome 13 Contains a
             novel gene and the 3' end of a novel gene (1190005B03Rik),
             complete sequence
          Length = 219200

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 527   ctggaagccaaaccaaggtcctcc 550
             |||||| |||||||||||||||||
Sbjct: 15607 ctggaaaccaaaccaaggtcctcc 15584
to top
>emb|CR545472.6| Zebrafish DNA sequence from clone DKEYP-32B1 in linkage group 5,
             complete sequence
          Length = 75199

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gaatacttttcttcacatgg 252
             ||||||||||||||||||||
Sbjct: 34012 gaatacttttcttcacatgg 33993
to top
>gb|AC087490.6| Homo sapiens chromosome 15, clone RP11-810H22, complete sequence
          Length = 183342

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    cataatgatataaaatatga 435
              ||||||||||||||||||||
Sbjct: 114939 cataatgatataaaatatga 114920
to top
>dbj|AK097500.1| Homo sapiens cDNA FLJ40181 fis, clone TESTI2018178
          Length = 2572

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   gcccaaacctctccccttcc 29
            ||||||||||||||||||||
Sbjct: 2044 gcccaaacctctccccttcc 2063
to top
>gb|AC103750.2| Homo sapiens chromosome 15, clone RP11-494F2, complete sequence
          Length = 179486

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    cataatgatataaaatatga 435
              ||||||||||||||||||||
Sbjct: 152833 cataatgatataaaatatga 152852
to top
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete
             sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   ctggagcaaagaaaaggcagaata 237
             |||||||| |||||||||||||||
Sbjct: 86745 ctggagcacagaaaaggcagaata 86768
to top
>gb|AC034303.14| Homo sapiens chromosome 17, clone RP11-648P8, complete sequence
          Length = 157850

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    gcccaaacctctccccttcc 29
             ||||||||||||||||||||
Sbjct: 91601 gcccaaacctctccccttcc 91582
to top
>gb|AF322142.1|AF322142 Chionachne koenigii teosinte branched1 protein (tb1) gene, partial
           cds
          Length = 1059

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  gcggcggccacctcgaagcc 59
           ||||||||||||||||||||
Sbjct: 700 gcggcggccacctcgaagcc 719
to top
>emb|AL928869.11| Mouse DNA sequence from clone RP23-393F9 on chromosome 2, complete
             sequence
          Length = 97022

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 601   acctgtctcaaaacaatata 620
             ||||||||||||||||||||
Sbjct: 52228 acctgtctcaaaacaatata 52247
to top
>gb|AC002347.3| Homo sapiens chromosome 17, clone CTC-297N7, complete sequence
          Length = 134706

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     gcccaaacctctccccttcc 29
              ||||||||||||||||||||
Sbjct: 120728 gcccaaacctctccccttcc 120709
to top
>emb|AL929123.9| Mouse DNA sequence from clone RP23-328K3 on chromosome 4, complete
             sequence
          Length = 208830

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   agcaaagaaaaggcagaata 237
             ||||||||||||||||||||
Sbjct: 12874 agcaaagaaaaggcagaata 12855
to top
>emb|AL672274.7| Mouse DNA sequence from clone RP23-351G20 on chromosome X, complete
              sequence
          Length = 189982

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 600    aacctgtctcaaaacaatat 619
              ||||||||||||||||||||
Sbjct: 139084 aacctgtctcaaaacaatat 139103
to top
>emb|AL671866.8| Mouse DNA sequence from clone RP23-59L24 on chromosome 4, complete
              sequence
          Length = 230447

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 526    gctggaagccaaaccaaggtcctc 549
              ||||||||||||||| ||||||||
Sbjct: 165247 gctggaagccaaacccaggtcctc 165224
to top
>emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chromosome X, complete
             sequence
          Length = 146105

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 597   cacaacctgtctcaaaacaa 616
             ||||||||||||||||||||
Sbjct: 55991 cacaacctgtctcaaaacaa 55972


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,407,306
Number of Sequences: 3902068
Number of extensions: 6407306
Number of successful extensions: 137677
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137432
Number of HSP's gapped (non-prelim): 245
length of query: 647
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 624
effective length of database: 17,143,297,704
effective search space: 10697417767296
effective search space used: 10697417767296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top