ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62n11 |
|---|---|
| Clone Library Name | barley_pub |
>FPPS_MAIZE (P49353) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 350 Score = 336 bits (862), Expect = 3e-92 Identities = 156/183 (85%), Positives = 170/183 (92%) Frame = +1 Query: 55 NGSGGDSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDS 234 NG+GGD++A FA IY LKEE+L DPAFEFT+ES QWIDRM+DYNVLGGKCNRGLSV+DS Sbjct: 6 NGAGGDTRAAFARIYKTLKEELLTDPAFEFTEESRQWIDRMVDYNVLGGKCNRGLSVVDS 65 Query: 235 YKTLKGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLI 414 YK LKG D L +EETFLACTLGWCIEWLQA+FLVLDDIMD+S TRRGQPCWFRVPQVGLI Sbjct: 66 YKLLKGADALGEEETFLACTLGWCIEWLQAFFLVLDDIMDDSHTRRGQPCWFRVPQVGLI 125 Query: 415 AVNDGIILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTK 594 A NDGIILRNHISRIL+RHF+GKPYY DL+DLFNEVEFKTASGQLLDLITTHEGEKDLTK Sbjct: 126 AANDGIILRNHISRILRRHFKGKPYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLTK 185 Query: 595 YNL 603 YN+ Sbjct: 186 YNI 188
>FPPS2_LUPAL (P49352) Farnesyl pyrophosphate synthetase 2 (FPP synthetase 2)| (FPS 2) (Farnesyl diphosphate synthetase 2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 342 Score = 285 bits (728), Expect = 1e-76 Identities = 133/178 (74%), Positives = 153/178 (85%) Frame = +1 Query: 70 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLK 249 D K+ F +YS LK E+L+DPAFEF+ +S QW++RMLDYNV GGK NRGLSVIDSYK LK Sbjct: 3 DPKSSFLNVYSILKSELLQDPAFEFSTDSRQWVERMLDYNVPGGKLNRGLSVIDSYKLLK 62 Query: 250 GVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDG 429 L+ EE FLA LGWCIEWLQAYFLVLDDIMDNS TRRG PCWFRVP+VG+IA NDG Sbjct: 63 DGQELNDEEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGHPCWFRVPKVGMIAPNDG 122 Query: 430 IILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNL 603 ++LRNHI RIL++HFRGKPYYVDL+DLFNEVEF+TASGQ++DLITT EGEKDL+KY L Sbjct: 123 VVLRNHIPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTL 180
>FPPS2_ARATH (Q43315) Farnesyl pyrophosphate synthetase 2 (FPP synthetase 2)| (FPS 2) (Farnesyl diphosphate synthetase 2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 342 Score = 283 bits (723), Expect = 4e-76 Identities = 129/179 (72%), Positives = 157/179 (87%) Frame = +1 Query: 70 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLK 249 D K+ F ++YS LK ++L+DP+FEFT ES QW++RMLDYNV GGK NRGLSV+DSYK LK Sbjct: 3 DLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKLLK 62 Query: 250 GVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDG 429 L+++ETFL+C LGWCIEWLQAYFLVLDDIMDNS TRRGQPCWFR P+VG+IA+NDG Sbjct: 63 QGQDLTEKETFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRKPKVGMIAINDG 122 Query: 430 IILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNLE 606 I+LRNHI RIL++HFR PYYVDL+DLFNEVEF+TA GQ++DLITT +GEKDL+KY+L+ Sbjct: 123 ILLRNHIHRILKKHFREMPYYVDLVDLFNEVEFQTACGQMIDLITTFDGEKDLSKYSLQ 181
>FPPS1_ARATH (Q09152) Farnesyl pyrophosphate synthetase 1, mitochondrial| precursor (FPP synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase 1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 384 Score = 282 bits (722), Expect = 5e-76 Identities = 129/178 (72%), Positives = 154/178 (86%) Frame = +1 Query: 70 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLK 249 D K+ F +YS LK ++L DP+FEFT+ES W+DRMLDYNV GGK NRGLSV+DS+K LK Sbjct: 45 DLKSTFLNVYSVLKSDLLHDPSFEFTNESRLWVDRMLDYNVRGGKLNRGLSVVDSFKLLK 104 Query: 250 GVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDG 429 + L+++E FL+C LGWCIEWLQAYFLVLDDIMDNS TRRGQPCWFRVPQVG++A+NDG Sbjct: 105 QGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVGMVAINDG 164 Query: 430 IILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNL 603 I+LRNHI RIL++HFR KPYYVDL+DLFNEVE +TA GQ++DLITT EGEKDL KY+L Sbjct: 165 ILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTACGQMIDLITTFEGEKDLAKYSL 222
>FPPS1_LUPAL (P49351) Farnesyl pyrophosphate synthetase 1 (FPP synthetase 1)| (FPS 1) (Farnesyl diphosphate synthetase 1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 342 Score = 281 bits (719), Expect = 1e-75 Identities = 131/178 (73%), Positives = 152/178 (85%) Frame = +1 Query: 70 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLK 249 D ++ F +YS LK E+L DPAFEF+ +S QW+DRMLDYNV GGK NRGLSVIDSY+ LK Sbjct: 3 DLRSTFLNVYSVLKSELLHDPAFEFSPDSRQWLDRMLDYNVPGGKLNRGLSVIDSYRLLK 62 Query: 250 GVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDG 429 L+ +E FLA LGWCIEWLQAYFLVLDDIMDNS TRRGQPCWFRVP+VG+IA NDG Sbjct: 63 DGHELNDDEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAANDG 122 Query: 430 IILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNL 603 ++LRNHI RIL++HFRGKPYY DL+DLFNEVEF+TASGQ++DLITT EGEKDL+KY L Sbjct: 123 VLLRNHIPRILKKHFRGKPYYADLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTL 180
>FPPS_ARTAN (P49350) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 343 Score = 278 bits (711), Expect = 9e-75 Identities = 129/181 (71%), Positives = 156/181 (86%) Frame = +1 Query: 61 SGGDSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYK 240 S D K++F ++Y LK E++ DPAFEF D+S QWI++MLDYNV GGK NRGLSV+DSY+ Sbjct: 2 SSTDLKSKFLKVYDTLKSELINDPAFEFDDDSRQWIEKMLDYNVPGGKLNRGLSVVDSYQ 61 Query: 241 TLKGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAV 420 LKG + LS +E FL+ LGWCIEWLQAYFLVLDDIMD S TRRGQPCWFR+P+VG+IA Sbjct: 62 LLKGGE-LSDDEIFLSSALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAA 120 Query: 421 NDGIILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYN 600 NDGI+LRNH+ RIL++HFRGKPYYVDL+DLFNEVEF+TASGQ++DLITT GEKDL+KY+ Sbjct: 121 NDGILLRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYS 180 Query: 601 L 603 L Sbjct: 181 L 181
>FPPS_HELAN (O64905) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 341 Score = 277 bits (709), Expect = 2e-74 Identities = 129/178 (72%), Positives = 153/178 (85%) Frame = +1 Query: 70 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLK 249 D K++F +Y LK E+L DPAFEF +S QWID+MLDYNV GGK NRGLSV+DSY+ LK Sbjct: 4 DLKSKFLHVYQTLKSELLNDPAFEFHHDSRQWIDKMLDYNVPGGKLNRGLSVVDSYQLLK 63 Query: 250 GVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDG 429 G + L+ +E FLA LGWCIEWLQAYFLVLDDIMD S TRRGQPCWFR+P+VG+IA NDG Sbjct: 64 GAE-LTDDEIFLASALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRLPKVGMIAANDG 122 Query: 430 IILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNL 603 +ILRNH+ RIL++HFRGKPYYVDL+DLFNEVEF+TASGQ++DLITT GEKDL+KY+L Sbjct: 123 LILRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSL 180
>FPPS1_PARAR (O24241) Farnesyl pyrophosphate synthetase 1 (FPP synthetase 1)| (FPS 1) (Farnesyl diphosphate synthetase 1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 342 Score = 275 bits (702), Expect = 1e-73 Identities = 128/178 (71%), Positives = 153/178 (85%) Frame = +1 Query: 70 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLK 249 D K+ F ++Y LK E++ DPAFEF D+S QW+++MLDYNV GGK NRGLSVIDSY+ LK Sbjct: 4 DLKSRFLQVYDTLKSELINDPAFEFDDDSRQWVEKMLDYNVPGGKLNRGLSVIDSYQLLK 63 Query: 250 GVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDG 429 G + L+ E FLA LGWCIEWLQAYFLVLDDIMD S TRRGQPCWFR+P+VG+IA NDG Sbjct: 64 GGE-LTDNEIFLAAALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDG 122 Query: 430 IILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNL 603 IILRN++ RIL++HFRGKPYYVDL+DLFNEVEF+TASGQ++DLITT GEKDL+KY+L Sbjct: 123 IILRNNVPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSL 180
>FPPS2_PARAR (O24242) Farnesyl pyrophosphate synthetase 2 (FPP synthetase 2)| (FPS 2) (Farnesyl diphosphate synthetase 2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 342 Score = 274 bits (700), Expect = 2e-73 Identities = 127/178 (71%), Positives = 153/178 (85%) Frame = +1 Query: 70 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLK 249 D +++F ++Y LK E++ DPAFEF D+S QWI++MLDYNV GGK NRGLSVIDSY+ LK Sbjct: 4 DIRSKFLQVYDTLKSELINDPAFEFDDDSRQWIEKMLDYNVPGGKLNRGLSVIDSYQLLK 63 Query: 250 GVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDG 429 G L+ +E F A LGWC+EWLQAYFLVLDDIMD S TRRGQPCWFR+P+VG+IA NDG Sbjct: 64 G-GKLTDDEIFHASALGWCVEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDG 122 Query: 430 IILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNL 603 IILRNH+ RIL++HFRGKPYYVDL+DLFNEVEF+TASGQ++DLITT GEKDL+KY+L Sbjct: 123 IILRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSL 180
>FPPS_KLULA (P49349) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 349 Score = 191 bits (484), Expect = 2e-48 Identities = 95/183 (51%), Positives = 131/183 (71%), Gaps = 4/183 (2%) Frame = +1 Query: 70 DSKAEFAEIYSRLKEEMLEDPA-FEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTL 246 D++A+F E++ L +E+ + A + +E+++W ++ L+YN GGK NRGLSV+D+Y L Sbjct: 3 DNRAQFLEVFPSLVQELRDILAGYGMPEEAIEWYEKSLNYNTPGGKLNRGLSVVDTYALL 62 Query: 247 KG---VDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIA 417 KG V LS EE LGWCIE LQAYFLV DD+MD S TRRGQPCW++V VG IA Sbjct: 63 KGYKSVSELSAEEYKKVAILGWCIELLQAYFLVADDMMDQSITRRGQPCWYKVENVGDIA 122 Query: 418 VNDGIILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKY 597 +ND +L I +L++HFR +PYYVDL++LF++V F+T GQLLDLIT E + DL+K+ Sbjct: 123 INDAFMLEGAIYCLLKKHFRTEPYYVDLLELFHDVTFQTELGQLLDLITAPEDKVDLSKF 182 Query: 598 NLE 606 +LE Sbjct: 183 SLE 185
>FPPS_YEAST (P08524) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 352 Score = 176 bits (445), Expect = 7e-44 Identities = 88/180 (48%), Positives = 121/180 (67%), Gaps = 3/180 (1%) Frame = +1 Query: 76 KAEFAEIYSRLKEEMLEDP-AFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTL-- 246 + F ++ +L EE+ A+ E+ W L+YN GGK NRGLSV+D+Y L Sbjct: 9 RERFLNVFPKLVEELNASLLAYGMPKEACDWYAHSLNYNTPGGKLNRGLSVVDTYAILSN 68 Query: 247 KGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVND 426 K V+ L +EE LGWCIE LQAYFLV DD+MD S TRRGQPCW++VP+VG IA+ND Sbjct: 69 KTVEQLGQEEYEKVAILGWCIELLQAYFLVADDMMDKSITRRGQPCWYKVPEVGEIAIND 128 Query: 427 GIILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNLE 606 +L I ++L+ HFR + YY+D+ +LF+EV F+T GQL+DLIT E + DL+K++L+ Sbjct: 129 AFMLEAAIYKLLKSHFRNEKYYIDITELFHEVTFQTELGQLMDLITAPEDKVDLSKFSLK 188
>FPPS_NEUCR (Q92250) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 347 Score = 170 bits (431), Expect = 3e-42 Identities = 84/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%) Frame = +1 Query: 82 EFAEIYSRLKEEMLE-DPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLKGVD 258 EF ++ +L+E +LE A++ ++ L W + L+ N LGGKCNRG+SV DS L G Sbjct: 9 EFESVFPKLEEALLEYAKAYKLPEQMLSWYKQSLEVNTLGGKCNRGMSVPDSASILLGRP 68 Query: 259 VLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDGIIL 438 L++EE F A TLGW E LQA+FLV DDIMD+S TRRG+PCW+R VG++A+ND +L Sbjct: 69 -LTEEEYFQAATLGWMTELLQAFFLVSDDIMDSSITRRGKPCWYRQEGVGMVAINDAFML 127 Query: 439 RNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNLE 606 + I +L+++FR P YVD ++LF+EV F+T GQL DL+T E + DL ++++ Sbjct: 128 ESAIYTLLKKYFRSHPRYVDFLELFHEVTFQTEMGQLCDLLTAPEDKVDLDNFSMD 183
>FPPS_GIBFU (Q92235) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 347 Score = 165 bits (418), Expect = 9e-41 Identities = 85/176 (48%), Positives = 116/176 (65%), Gaps = 1/176 (0%) Frame = +1 Query: 82 EFAEIYSRLKEEMLEDP-AFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLKGVD 258 EF +Y +L+E +L+ +++ E L W R L+ N LGGKCNRG+SV DS L Sbjct: 9 EFNSVYPKLEEALLDHARSYKLPQEQLDWYKRSLEVNPLGGKCNRGMSVPDSVSLLLEKP 68 Query: 259 VLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDGIIL 438 L++E+ F A TLGW E LQA+FLV DDIMD+S TRRGQPCW+R VG+IA+ND +L Sbjct: 69 -LTEEQYFQAATLGWMTELLQAFFLVSDDIMDSSITRRGQPCWYRQEGVGMIAINDAFML 127 Query: 439 RNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNLE 606 + I +L+++FR P Y DLI+ F+E F+T GQL DL+T E +L ++LE Sbjct: 128 ESAIYTLLKKYFRSHPAYFDLIESFHETTFQTELGQLCDLLTAPEDNVNLDNFSLE 183
>FPPS_SCHPO (O14230) Probable farnesyl pyrophosphate synthetase (FPP| synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 347 Score = 156 bits (395), Expect = 4e-38 Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Frame = +1 Query: 61 SGGDSKAEFAEIYSRLKEEMLED-PAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSY 237 S D +A+F +E++ D+ +W L +N LGGK NRGLSVIDSY Sbjct: 2 SAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDSY 61 Query: 238 KTLKGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIA 417 + L G L + A LGW +E LQ++FL+ DDIMD S+TRRGQPCW+ +P VG IA Sbjct: 62 EILLG-HPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVGNIA 120 Query: 418 VNDGIILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKY 597 +ND ++ + I +L++HFR + YVDLI+LF++V F+T GQ LDL+T E DL+K+ Sbjct: 121 INDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKF 180 Query: 598 NLE 606 +L+ Sbjct: 181 SLQ 183
>FPPS_RAT (P05369) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) (Cholesterol-regulated 39 kDa protein) (CR 39) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 353 Score = 149 bits (375), Expect = 9e-36 Identities = 75/171 (43%), Positives = 113/171 (66%) Frame = +1 Query: 85 FAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLKGVDVL 264 F++I L E+ L P +++ I +L+YN +GGK NRGL+V+ +++ L Sbjct: 21 FSQIVKVLTEDELGHPE---KGDAITRIKEVLEYNTVGGKYNRGLTVVQTFQELVEPRKQ 77 Query: 265 SKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDGIILRN 444 E A T+GWC+E LQA+FLVLDDIMD+S TRRGQ CW++ P +GL A+ND ++L Sbjct: 78 DAESLQRALTVGWCVELLQAFFLVLDDIMDSSYTRRGQICWYQKPGIGLDAINDALLLEA 137 Query: 445 HISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKY 597 I R+L+ + R +PYY++L++LF + ++T GQ LDLIT +G+ DL +Y Sbjct: 138 AIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLITAPQGQVDLGRY 188
>FPPS_CHICK (P08836) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 367 Score = 147 bits (371), Expect = 2e-35 Identities = 72/178 (40%), Positives = 110/178 (61%), Gaps = 1/178 (0%) Frame = +1 Query: 76 KAEFAEIYSRLKEEMLEDP-AFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLKG 252 + EF + ++ ++ ED +++ + +L YN GGKCNRGL+V+ +Y+ L G Sbjct: 28 REEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAYRELSG 87 Query: 253 VDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDGI 432 E A +GWCIE QA+FLV DDIMD S TRRGQ CW++ VGL A+ND Sbjct: 88 PGQKDAESLRCALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSF 147 Query: 433 ILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNLE 606 +L + + R+L+++ R +PYYV L++LF + ++T GQ+LDLIT + DL+ ++ E Sbjct: 148 LLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEE 205
>FPPS_MOUSE (Q920E5) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) (Cholesterol-regulated 39 kDa protein) (CR 39) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 353 Score = 145 bits (366), Expect = 9e-35 Identities = 73/171 (42%), Positives = 111/171 (64%) Frame = +1 Query: 85 FAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLKGVDVL 264 F++I L E+ L P +++ + +L+YN LGGK NRGL+V+ +++ L Sbjct: 21 FSQIVKVLTEKELGHPEI---GDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQ 77 Query: 265 SKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDGIILRN 444 E A T+GWC+E LQA+FLV DDIMD+S TRRGQ CW++ P +GL A+ND ++L Sbjct: 78 DAESLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEA 137 Query: 445 HISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKY 597 I R+L+ + R +PYY++L++LF + ++T GQ LDL+T +G DL +Y Sbjct: 138 SIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQGHVDLGRY 188
>FPPS_HUMAN (P14324) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 353 Score = 141 bits (355), Expect = 2e-33 Identities = 71/175 (40%), Positives = 112/175 (64%), Gaps = 1/175 (0%) Frame = +1 Query: 76 KAEFAEIYSRLKEEMLEDP-AFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLKG 252 K +F + +S++ + ED +++ + +L+YN +GGK NRGL+V+ +++ L Sbjct: 14 KQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVE 73 Query: 253 VDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDGI 432 + A T+GWC+E LQA+FLV DDIMD+S TRRGQ CW++ P VGL A+ND Sbjct: 74 PRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDAN 133 Query: 433 ILRNHISRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKY 597 +L I R+L+ + R +PYY++LI+LF + ++T GQ LDL+T +G DL ++ Sbjct: 134 LLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRF 188
>GGPPS_YEAST (Q12051) Geranylgeranyl pyrophosphate synthetase (GGPP synthetase)| (GGPPSase) (Geranylgeranyl diphosphate synthase) (BET2 suppressor protein 1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farn Length = 335 Score = 37.7 bits (86), Expect = 0.028 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 3/156 (1%) Frame = +1 Query: 100 SRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLKGVDVLSKEET 279 +++ E + DP + +ESL I + ++ +L N L++I + L K++ Sbjct: 3 AKIDELINNDPVWSSQNESL--ISKPYNHILLKPGKNFRLNLIVQINRVMN---LPKDQL 57 Query: 280 FLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQP---CWFRVPQVGLIAVNDGIILRNHI 450 + + +E L L++DDI DN+ RRGQ F VP +N + Sbjct: 58 AIVSQI---VELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPS----TINTANYMYFRA 110 Query: 451 SRILQRHFRGKPYYVDLIDLFNEVEFKTASGQLLDL 558 +++ + +P Y +LI +FNE GQ LD+ Sbjct: 111 MQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDI 146
>GGPS_SULAC (P39464) Geranylgeranyl pyrophosphate synthetase (GGPP synthetase)| (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 330 Score = 36.6 bits (83), Expect = 0.062 Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Frame = +1 Query: 196 GGKCNRGLSVIDSYKTLKGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRG 375 GGK R L + S G +E + A G IE L + LV DDIMD RRG Sbjct: 41 GGKRLRPLILTISSDLFGG----QRERAYYA---GAAIEVLHTFTLVHDDIMDQDNIRRG 93 Query: 376 QPCWFRVPQVGLIAVNDGIILRNHISRILQRHFRGKP--YYVDLIDLFNEVEFKTASGQL 549 P V +A+ G +L ++L + RG P + D+F + GQ Sbjct: 94 LPT-VHVKYGLPLAILAGDLLHAKAFQLLTQALRGLPSETIIKAFDIFTRSIIIISEGQA 152 Query: 550 LDL 558 +D+ Sbjct: 153 VDM 155
>GGPS_SULSO (P95999) Geranylgeranyl pyrophosphate synthetase (GGPP synthetase)| (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 332 Score = 32.7 bits (73), Expect = 0.89 Identities = 23/62 (37%), Positives = 30/62 (48%) Frame = +1 Query: 196 GGKCNRGLSVIDSYKTLKGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRG 375 GGK R L ++ S + G +E + A +E L + LV DDIMDN RRG Sbjct: 43 GGKRLRPLVLVSSSDLIGG----DRERAYKAAA---AVEILHNFTLVHDDIMDNDGLRRG 95 Query: 376 QP 381 P Sbjct: 96 LP 97
>IDSA_METJA (Q58270) Bifunctional short chain isoprenyl diphosphate synthase| [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltranstransferase); Geranyltranstransferase (EC 2.5.1.10)] Length = 327 Score = 32.7 bits (73), Expect = 0.89 Identities = 24/62 (38%), Positives = 31/62 (50%) Frame = +1 Query: 196 GGKCNRGLSVIDSYKTLKGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRG 375 GGK R + +Y LK D+ EE A +E + Y L+ DDIMDN RRG Sbjct: 46 GGKRIRPYLTVVTYM-LKKDDI---EEVLPAAA---AVELIHNYTLIHDDIMDNDDERRG 98 Query: 376 QP 381 +P Sbjct: 99 KP 100
>IDSA_METTH (O26156) Bifunctional short chain isoprenyl diphosphate synthase| [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltranstransferase); Geranyltranstransferase (EC 2.5.1.10)] Length = 325 Score = 32.7 bits (73), Expect = 0.89 Identities = 26/95 (27%), Positives = 43/95 (45%) Frame = +1 Query: 97 YSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTLKGVDVLSKEE 276 YS + +E + + + T E+L L GGK R + S + + G + Sbjct: 11 YSEMADERIRESISDITPETLLRASEHLI--TAGGKKIRPSLALLSSEAVGG-------D 61 Query: 277 TFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQP 381 A + IE + + L+ DDIMD+ + RRG+P Sbjct: 62 PGDAAGVAAAIELIHTFSLIHDDIMDDDEIRRGEP 96
>GGPP4_ARATH (Q9SLG2) Geranylgeranyl pyrophosphate synthetase 4 precursor (GGPP| synthetase 4) (GGPS4) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 372 Score = 32.3 bits (72), Expect = 1.2 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 4/156 (2%) Frame = +1 Query: 166 IDRMLDYNVL-GGKCNRGLSVIDSYKTLKGVDVLSKEETFLACTLGWCIEWLQAYFLVLD 342 I + + Y +L GGK R + + + + + G E LA +E + L+ D Sbjct: 108 IHKAMRYAILAGGKRVRPILCLAACELVGG-------EERLAIQAACAVEMIHTMSLIKD 160 Query: 343 DI--MDNSQTRRGQPCWFRVPQVGLIAVNDGIILRNHISRILQRHFRGKPYYVDLIDLFN 516 D+ MDN RRG+P +V + ++ G +L + + K + +L Sbjct: 161 DLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTEADVSSKKMVRAVKELAK 220 Query: 517 EVEFK-TASGQLLDLITTHEGEKDLTKYNLECSPAH 621 + K +GQ DL + + D+ +LE H Sbjct: 221 SIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVH 256
>IDSA_METTM (Q53479) Bifunctional short chain isoprenyl diphosphate synthase| [Includes: Farnesyl pyrophosphate synthetase (EC 2.5.1.1) (FPP synthetase) (Dimethylallyltranstransferase); Geranyltranstransferase (EC 2.5.1.10)] Length = 324 Score = 30.8 bits (68), Expect = 3.4 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +1 Query: 307 IEWLQAYFLVLDDIMDNSQTRRGQP 381 IE + + L+ DDIMD+ + RRG+P Sbjct: 71 IELIHTFSLIHDDIMDDDEMRRGEP 95
>EMBA_MYCSM (Q50394) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1092 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +1 Query: 292 TLGWCIEWLQAYFLVLDDIMDNSQTRR 372 T+ W E+L+ YFL ++D +D S TRR Sbjct: 490 TIPWYQEFLRYYFLTVEDSVDGSLTRR 516
>IF2_RALEJ (Q46ZP1) Translation initiation factor IF-2| Length = 966 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%) Frame = +1 Query: 388 FRVPQVGLIA---VNDGIILRNHISRILQRH 471 FRVP++G +A V DG++ RN + R+L+ + Sbjct: 881 FRVPKIGAVAGCMVTDGLVKRNSLVRVLRNN 911
>NFKB2_XENLA (O73630) Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor| KBF2) [Contains: Nuclear factor NF-kappa-B p52 subunit] Length = 958 Score = 30.4 bits (67), Expect = 4.4 Identities = 18/72 (25%), Positives = 37/72 (51%) Frame = +1 Query: 67 GDSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGLSVIDSYKTL 246 G + A++ E+ SRL+ + L + + + S + +Y + GG ++ + S Sbjct: 835 GQTGADWTELASRLRLQSLVET---YKNTSSPTESLLRNYELAGGNLKELINTLQSMGLN 891 Query: 247 KGVDVLSKEETF 282 +GV++L K ET+ Sbjct: 892 EGVELLCKSETY 903
>COQ1_YARLI (Q6CBH3) Probable hexaprenyl pyrophosphate synthetase,| mitochondrial precursor (EC 2.5.1.-) (HPS) Length = 452 Score = 30.0 bits (66), Expect = 5.8 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 307 IEWLQAYFLVLDDIMDNSQTRRGQP 381 +E + L+ DD++DNS TRRG P Sbjct: 200 VEMIHTASLLHDDVIDNSATRRGSP 224
>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7073 Score = 29.6 bits (65), Expect = 7.6 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +1 Query: 205 CNRGLSVIDSYKTLKGVDVLSKEETFLACTLGWCIEWLQAYFL 333 C GL +DSY L+ + V LG EW+ AY L Sbjct: 2268 CLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYML 2310
>Y1371_METJA (Q58766) Putative methyltransferase MJ1371 (EC 2.1.1.-)| Length = 244 Score = 29.6 bits (65), Expect = 7.6 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 67 GDSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLG 198 GD+K E + Y +LKEE +E E D +D++LD + G Sbjct: 10 GDNKEEVLKAYEKLKEEGIE---VELIDNPKLLVDKLLDGEIDG 50
>GGPP2_ARATH (O04046) Geranylgeranyl pyrophosphate synthetase 2 precursor (GGPP| synthetase 2) (GGPS2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] Length = 376 Score = 29.3 bits (64), Expect = 9.9 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +1 Query: 307 IEWLQAYFLVLDDI--MDNSQTRRGQPCWFRVPQVGLIAVNDGIIL 438 +E + L+ DD+ MDN RRG+P +V G+ ++ G +L Sbjct: 153 VEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALL 198
>EMBA_MYCAV (P71485) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1108 Score = 29.3 bits (64), Expect = 9.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +1 Query: 292 TLGWCIEWLQAYFLVLDDIMDNSQTRR 372 T+ W +WL+ YFL ++ D S RR Sbjct: 504 TIAWYQDWLRYYFLTVESNPDGSMARR 530
>AMSJ_ERWAM (Q46637) Amylovoran biosynthesis protein amsJ (EC 2.-.-.-)| Length = 415 Score = 29.3 bits (64), Expect = 9.9 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = +1 Query: 190 VLGGKCNRGLSVIDSYKTLKGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMD 354 V+ RG V+ + T G+D +++ +A TLG ++ Y +V+D+ D Sbjct: 257 VINAMIERGYQVV-ALSTCTGIDSYHRDDRMVAITLGDYVQQKDKYRVVMDEFND 310 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,670,255 Number of Sequences: 219361 Number of extensions: 1504154 Number of successful extensions: 4244 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 4165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4233 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
