Clone Information

BLAST Search Result

Clone Name	bah63c08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_473364.1\| Oryza sativa (japonica cultivar-group), predic...	353	4e-94
2	dbj\|AK121106.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	353	4e-94
3	emb\|AL606695.3\|OSJN00112 Oryza sativa genomic DNA, chromosome 4,...	178	1e-41
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	178	1e-41
5	ref\|NM_197359.1\| Oryza sativa (japonica cultivar-group) putative...	88	4e-14
6	dbj\|AK070811.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	4e-14
7	dbj\|AK121309.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	80	1e-11
8	gb\|AY111148.1\| Zea mays CL21604_1 mRNA sequence	54	6e-04
9	gb\|AC025296.10\| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen...	50	0.009
10	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.009
11	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	50	0.009
12	ref\|NM_180734.1\| Arabidopsis thaliana ATLCBK1 (A. THALIANA LONG-...	44	0.55
13	ref\|NM_122252.2\| Arabidopsis thaliana ATLCBK1 (A. THALIANA LONG-...	44	0.55
14	ref\|NM_001036852.1\| Arabidopsis thaliana ATLCBK1 (A. THALIANA LO...	44	0.55
15	gb\|AY139759.1\| Arabidopsis thaliana AT5g23450/K19M13_8 mRNA, com...	44	0.55
16	gb\|AC087664.5\| Homo sapiens chromosome 8, clone RP11-379I19, com...	44	0.55
17	dbj\|AB046717.1\| Arabidopsis thaliana AtLCBK1 mRNA for sphingosin...	44	0.55
18	gb\|BT004544.1\| Arabidopsis thaliana AT5g23450/K19M13_8 gene, com...	44	0.55
19	dbj\|AB018110.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	44	0.55
20	emb\|AJ632313.1\| Cotesia congregata virus complete genome, segmen...	42	2.2
21	emb\|AJ640102.1\| Cotesia congregata virus proviral CcBV PTPS gene...	42	2.2
22	gb\|AC080043.5\| Homo sapiens chromosome , clone RP11-45M9, comple...	42	2.2
23	gb\|AC090103.4\| Homo sapiens chromosome 8, clone RP11-299D14, com...	42	2.2
24	gb\|AC023566.11\| Homo sapiens chromosome 8, clone RP11-660D5, com...	42	2.2
25	emb\|CR760477.2\| Xenopus tropicalis finished cDNA, clone TNeu071b17	42	2.2
26	gb\|CP000141.1\| Carboxydothermus hydrogenoformans Z-2901, complet...	40	8.6
27	gb\|AC115013.18\| Mus musculus chromosome 10, clone RP24-193P19, c...	40	8.6
28	gb\|AC114002.4\| Mus musculus BAC clone RP23-165H7 from 12, comple...	40	8.6
29	emb\|AJ302074.2\|SPN302074 Streptococcus pneumoniae bacteriophage ...	40	8.6
30	gb\|AC011711.8\| Homo sapiens chromosome 11, clone RP11-309J20, co...	40	8.6
31	dbj\|AP008934.1\| Staphylococcus saprophyticus subsp. saprophyticu...	40	8.6
32	gb\|AC023163.25\| Homo sapiens 12 BAC RP11-239B4 (Roswell Park Can...	40	8.6
33	emb\|CR377948.1\| Pinus pinaster SSR, clone PPB5A03r	40	8.6
34	emb\|CR377947.1\| Pinus pinaster SSR, clone PPB5A03	40	8.6
35	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
36	gb\|AC155890.2\| Medicago truncatula chromosome 7 BAC clone mth2-4...	40	8.6
37	gb\|AC012508.10\| Homo sapiens BAC clone RP11-521O16 from 2, compl...	40	8.6
38	gb\|AC079353.5\| Homo sapiens BAC clone RP11-1136K13 from 2, compl...	40	8.6
39	gb\|AC102491.19\| Mus musculus chromosome 1, clone RP24-529L13, co...	40	8.6
40	gb\|AC107397.5\| Homo sapiens BAC clone RP11-703C14 from 4, comple...	40	8.6
41	gb\|AC005294.1\| Homo sapiens 12 BAC GSHB-410F4 (Genome Systems Hu...	40	8.6
42	dbj\|AP005180.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
43	gb\|AC153978.5\| Mus musculus 10 BAC RP24-217I1 (Roswell Park Canc...	40	8.6
44	gb\|M98263.1\|HUMDECOR01 Human decorin gene, exon 1	40	8.6
45	emb\|AL805954.9\| Mouse DNA sequence from clone RP23-277N22 on chr...	40	8.6

>ref|XM_473364.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2247

 Score =  353 bits (178), Expect = 4e-94
 Identities = 427/510 (83%)
 Strand = Plus / Plus

                                                                       
Query: 116 gaaagctgatacaactgatgcaagactcacaagtaaagcccttatatggggttccactgt 175
           ||||||||||| || ||||| ||||||||||||||||||||| |||||||||||  || |
Sbjct: 324 gaaagctgatataagtgatgtaagactcacaagtaaagccctaatatggggttcttcttt 383

                                                                       
Query: 176 actcagccttgaggatgtcatctctgtatcctataattctggtgtccaacattttacttt 235
           |||||| ||||||||||||||||||||||| || | |||||||||||||||||| | | |
Sbjct: 384 actcagtcttgaggatgtcatctctgtatcttacagttctggtgtccaacatttcattgt 443

                                                                       
Query: 236 acatgcatatcctggtaagaagtctctatttggaaagacacatagagttcggaaggactt 295
            |||||||| |||  |||||||| | | |||||||||||||| ||||| ||||||||| |
Sbjct: 444 gcatgcatacccttctaagaagtatttgtttggaaagacacacagagtacggaaggacct 503

                                                                       
Query: 296 ccgatttatggcctctacactagacgaggcaattttgtgggtaacatgctttgcagaaca 355
           ||| ||||| ||| ||||  |||| ||||| ||||  ||||||||||||||||| |||||
Sbjct: 504 ccggtttatagcccctactgtagaggaggccatttcatgggtaacatgctttgccgaaca 563

                                                                       
Query: 356 gaacatatacattaatgtactgccacatcctgcaacatccagtatcaaggaagacacaga 415
            ||||||||  ||||  | || || |  ||| |||||||||||| | || |||||   ||
Sbjct: 564 aaacatatatgttaacatgctacctctccctccaacatccagtaccgagcaagaccttga 623

                                                                       
Query: 416 tgccccccttggtggggttttatttgattacccaccaatcaaatccagaactccgcagag 475
           ||  |||||  |||| | |||||||||  ||||||| |||||||  |||||||| | |||
Sbjct: 624 tggtcccctcagtggtgctttatttgaccacccacccatcaaatgtagaactccaccgag 683

                                                                       
Query: 476 aatacttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccatga 535
            |||||||||||| |||||||||| ||||| |||||| | |||   ||||||||||||||
Sbjct: 684 gatacttgttatactgaaccctcggtctgggcatggtagatcatgcaaagttttccatga 743

                                                                       
Query: 536 aaaagcagaacctatatttaagcttgcaggttttcacatggagatagttaaaactactca 595
            |||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||
Sbjct: 744 caaagcagaacctatttttaagcttgcaggttttcacatggaagtggttaaaactactca 803

                                         
Query: 596 tgctggtcatgcgaagtctctcgcgtctac 625
           ||||||||| || || ||||| || |||||
Sbjct: 804 tgctggtcacgctaaatctcttgcatctac 833

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>dbj|AK121106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072I23, full
            insert sequence
          Length = 3100

 Score =  353 bits (178), Expect = 4e-94
 Identities = 427/510 (83%)
 Strand = Plus / Plus

                                                                        
Query: 116  gaaagctgatacaactgatgcaagactcacaagtaaagcccttatatggggttccactgt 175
            ||||||||||| || ||||| ||||||||||||||||||||| |||||||||||  || |
Sbjct: 950  gaaagctgatataagtgatgtaagactcacaagtaaagccctaatatggggttcttcttt 1009

                                                                        
Query: 176  actcagccttgaggatgtcatctctgtatcctataattctggtgtccaacattttacttt 235
            |||||| ||||||||||||||||||||||| || | |||||||||||||||||| | | |
Sbjct: 1010 actcagtcttgaggatgtcatctctgtatcttacagttctggtgtccaacatttcattgt 1069

                                                                        
Query: 236  acatgcatatcctggtaagaagtctctatttggaaagacacatagagttcggaaggactt 295
             |||||||| |||  |||||||| | | |||||||||||||| ||||| ||||||||| |
Sbjct: 1070 gcatgcatacccttctaagaagtatttgtttggaaagacacacagagtacggaaggacct 1129

                                                                        
Query: 296  ccgatttatggcctctacactagacgaggcaattttgtgggtaacatgctttgcagaaca 355
            ||| ||||| ||| ||||  |||| ||||| ||||  ||||||||||||||||| |||||
Sbjct: 1130 ccggtttatagcccctactgtagaggaggccatttcatgggtaacatgctttgccgaaca 1189

                                                                        
Query: 356  gaacatatacattaatgtactgccacatcctgcaacatccagtatcaaggaagacacaga 415
             ||||||||  ||||  | || || |  ||| |||||||||||| | || |||||   ||
Sbjct: 1190 aaacatatatgttaacatgctacctctccctccaacatccagtaccgagcaagaccttga 1249

                                                                        
Query: 416  tgccccccttggtggggttttatttgattacccaccaatcaaatccagaactccgcagag 475
            ||  |||||  |||| | |||||||||  ||||||| |||||||  |||||||| | |||
Sbjct: 1250 tggtcccctcagtggtgctttatttgaccacccacccatcaaatgtagaactccaccgag 1309

                                                                        
Query: 476  aatacttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccatga 535
             |||||||||||| |||||||||| ||||| |||||| | |||   ||||||||||||||
Sbjct: 1310 gatacttgttatactgaaccctcggtctgggcatggtagatcatgcaaagttttccatga 1369

                                                                        
Query: 536  aaaagcagaacctatatttaagcttgcaggttttcacatggagatagttaaaactactca 595
             |||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||
Sbjct: 1370 caaagcagaacctatttttaagcttgcaggttttcacatggaagtggttaaaactactca 1429

                                          
Query: 596  tgctggtcatgcgaagtctctcgcgtctac 625
            ||||||||| || || ||||| || |||||
Sbjct: 1430 tgctggtcacgctaaatctcttgcatctac 1459

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>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08,
             complete sequence
          Length = 140449

 Score =  178 bits (90), Expect = 1e-41
 Identities = 282/346 (81%)
 Strand = Plus / Plus

                                                                         
Query: 212   ttctggtgtccaacattttactttacatgcatatcctggtaagaagtctctatttggaaa 271
             |||||||||||||||||| | | | |||||||| |||  |||||||| | | ||||||||
Sbjct: 29727 ttctggtgtccaacatttcattgtgcatgcatacccttctaagaagtatttgtttggaaa 29786

                                                                         
Query: 272   gacacatagagttcggaaggacttccgatttatggcctctacactagacgaggcaatttt 331
             |||||| ||||| ||||||||| |||| ||||| ||| ||||  |||| ||||| |||| 
Sbjct: 29787 gacacacagagtacggaaggacctccggtttatagcccctactgtagaggaggccatttc 29846

                                                                         
Query: 332   gtgggtaacatgctttgcagaacagaacatatacattaatgtactgccacatcctgcaac 391
              ||||||||||||||||| ||||| ||||||||  ||||  | || || |  ||| ||||
Sbjct: 29847 atgggtaacatgctttgccgaacaaaacatatatgttaacatgctacctctccctccaac 29906

                                                                         
Query: 392   atccagtatcaaggaagacacagatgccccccttggtggggttttatttgattacccacc 451
             |||||||| | || |||||   ||||  |||||  |||| | |||||||||  |||||||
Sbjct: 29907 atccagtaccgagcaagaccttgatggtcccctcagtggtgctttatttgaccacccacc 29966

                                                                         
Query: 452   aatcaaatccagaactccgcagagaatacttgttatattgaaccctcgttctggacatgg 511
              |||||||  |||||||| | ||| |||||||||||| |||||||||| ||||| |||||
Sbjct: 29967 catcaaatgtagaactccaccgaggatacttgttatactgaaccctcggtctgggcatgg 30026

                                                           
Query: 512   tcggtcaattaaagttttccatgaaaaagcagaacctatatttaag 557
             | | |||   |||||||||||||| |||||||||||||| ||||||
Sbjct: 30027 tagatcatgcaaagttttccatgacaaagcagaacctatttttaag 30072



 Score =  111 bits (56), Expect = 3e-21
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                         
Query: 116   gaaagctgatacaactgatgcaagactcacaagtaaagcccttatatggggttccactgt 175
             ||||||||||| || ||||| ||||||||||||||||||||| |||||||||||  || |
Sbjct: 29534 gaaagctgatataagtgatgtaagactcacaagtaaagccctaatatggggttcttcttt 29593

                                         
Query: 176   actcagccttgaggatgtcatctctgta 203
             |||||| |||||||||||||||||||||
Sbjct: 29594 actcagtcttgaggatgtcatctctgta 29621



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                         
Query: 556   agcttgcaggttttcacatggagatagttaaaactactcatgctggtcatgcgaagtctc 615
             ||||||||||||||||||||||  | ||||||||||||||||||||||| || || ||||
Sbjct: 31183 agcttgcaggttttcacatggaagtggttaaaactactcatgctggtcacgctaaatctc 31242

                       
Query: 616   tcgcgtctac 625
             | || |||||
Sbjct: 31243 ttgcatctac 31252

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  178 bits (90), Expect = 1e-41
 Identities = 282/346 (81%)
 Strand = Plus / Plus

                                                                            
Query: 212      ttctggtgtccaacattttactttacatgcatatcctggtaagaagtctctatttggaaa 271
                |||||||||||||||||| | | | |||||||| |||  |||||||| | | ||||||||
Sbjct: 27087084 ttctggtgtccaacatttcattgtgcatgcatacccttctaagaagtatttgtttggaaa 27087143

                                                                            
Query: 272      gacacatagagttcggaaggacttccgatttatggcctctacactagacgaggcaatttt 331
                |||||| ||||| ||||||||| |||| ||||| ||| ||||  |||| ||||| |||| 
Sbjct: 27087144 gacacacagagtacggaaggacctccggtttatagcccctactgtagaggaggccatttc 27087203

                                                                            
Query: 332      gtgggtaacatgctttgcagaacagaacatatacattaatgtactgccacatcctgcaac 391
                 ||||||||||||||||| ||||| ||||||||  ||||  | || || |  ||| ||||
Sbjct: 27087204 atgggtaacatgctttgccgaacaaaacatatatgttaacatgctacctctccctccaac 27087263

                                                                            
Query: 392      atccagtatcaaggaagacacagatgccccccttggtggggttttatttgattacccacc 451
                |||||||| | || |||||   ||||  |||||  |||| | |||||||||  |||||||
Sbjct: 27087264 atccagtaccgagcaagaccttgatggtcccctcagtggtgctttatttgaccacccacc 27087323

                                                                            
Query: 452      aatcaaatccagaactccgcagagaatacttgttatattgaaccctcgttctggacatgg 511
                 |||||||  |||||||| | ||| |||||||||||| |||||||||| ||||| |||||
Sbjct: 27087324 catcaaatgtagaactccaccgaggatacttgttatactgaaccctcggtctgggcatgg 27087383

                                                              
Query: 512      tcggtcaattaaagttttccatgaaaaagcagaacctatatttaag 557
                | | |||   |||||||||||||| |||||||||||||| ||||||
Sbjct: 27087384 tagatcatgcaaagttttccatgacaaagcagaacctatttttaag 27087429



 Score =  111 bits (56), Expect = 3e-21
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                            
Query: 116      gaaagctgatacaactgatgcaagactcacaagtaaagcccttatatggggttccactgt 175
                ||||||||||| || ||||| ||||||||||||||||||||| |||||||||||  || |
Sbjct: 27086891 gaaagctgatataagtgatgtaagactcacaagtaaagccctaatatggggttcttcttt 27086950

                                            
Query: 176      actcagccttgaggatgtcatctctgta 203
                |||||| |||||||||||||||||||||
Sbjct: 27086951 actcagtcttgaggatgtcatctctgta 27086978



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                            
Query: 556      agcttgcaggttttcacatggagatagttaaaactactcatgctggtcatgcgaagtctc 615
                ||||||||||||||||||||||  | ||||||||||||||||||||||| || || ||||
Sbjct: 27088540 agcttgcaggttttcacatggaagtggttaaaactactcatgctggtcacgctaaatctc 27088599

                          
Query: 616      tcgcgtctac 625
                | || |||||
Sbjct: 27088600 ttgcatctac 27088609

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>ref|NM_197359.1| Oryza sativa (japonica cultivar-group) putative sphingosine kinase
           (OSJNBa0076F20.14), mRNA
          Length = 2274

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 116/140 (82%)
 Strand = Plus / Plus

                                                                       
Query: 477 atacttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccatgaa 536
           |||||||| || ||||| ||||| |||||||||||| | || |  ||||||||||| | |
Sbjct: 703 atacttgtcatcttgaatcctcgatctggacatggtagatctagcaaagttttccacgga 762

                                                                       
Query: 537 aaagcagaacctatatttaagcttgcaggttttcacatggagatagttaaaactactcat 596
           ||||  ||||||||||| ||||||||||||||  | |||||  | || |||||||| |||
Sbjct: 763 aaagtggaacctatattcaagcttgcaggtttcaagatggaagtggtcaaaactacacat 822

                               
Query: 597 gctggtcatgcgaagtctct 616
           ||||||||||| || |||||
Sbjct: 823 gctggtcatgcaaaatctct 842

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>dbj|AK070811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O10, full
            insert sequence
          Length = 3437

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 116/140 (82%)
 Strand = Plus / Plus

                                                                        
Query: 477  atacttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccatgaa 536
            |||||||| || ||||| ||||| |||||||||||| | || |  ||||||||||| | |
Sbjct: 1044 atacttgtcatcttgaatcctcgatctggacatggtagatctagcaaagttttccacgga 1103

                                                                        
Query: 537  aaagcagaacctatatttaagcttgcaggttttcacatggagatagttaaaactactcat 596
            ||||  ||||||||||| ||||||||||||||  | |||||  | || |||||||| |||
Sbjct: 1104 aaagtggaacctatattcaagcttgcaggtttcaagatggaagtggtcaaaactacacat 1163

                                
Query: 597  gctggtcatgcgaagtctct 616
            ||||||||||| || |||||
Sbjct: 1164 gctggtcatgcaaaatctct 1183

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>dbj|AK121309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112D12, full
            insert sequence
          Length = 3328

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 116/140 (82%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                        
Query: 477  atacttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccatgaa 536
            |||||||| || ||||| ||||| |||||||||||| | || |  ||||||||||| | |
Sbjct: 953  atacttgtcatcttgaatcctcgatctggacatggtagatctagcaaagttttccacgga 1012

                                                                        
Query: 537  aaagcagaacctatatttaagcttgcaggttttcacatggagatagttaaaactactcat 596
            ||||  ||||||||| ||||||||||||||||  | |||||  | || |||||||| |||
Sbjct: 1013 aaagtggaacctata-ttaagcttgcaggtttcaagatggaagtggtcaaaactacacat 1071

                                
Query: 597  gctggtcatgcgaagtctct 616
            ||||||||||| || |||||
Sbjct: 1072 gctggtcatgcaaaatctct 1091

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>gb|AY111148.1| Zea mays CL21604_1 mRNA sequence
          Length = 1022

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 556 agcttgcaggttttcacatggagatagttaaaactactcatgc 598
           |||||||||||||||| |||||  | |||||||||||||||||
Sbjct: 477 agcttgcaggttttcagatggaagttgttaaaactactcatgc 435

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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
             sequence
          Length = 165394

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 477   atacttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccatgaa 536
             |||||||| || ||||| ||||| |||||||||||| | || |  ||||||||||| | |
Sbjct: 74761 atacttgtcatcttgaatcctcgatctggacatggtagatctagcaaagttttccacgga 74820

                              
Query: 537   aaagcagaacctatatt 553
             ||||  |||||||||||
Sbjct: 74821 aaagtggaacctatatt 74837



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                         
Query: 556   agcttgcaggttttcacatggagatagttaaaactactcatgctggtcatgcgaagtctc 615
             |||||||||||||  | |||||  | || |||||||| |||||||||||||| || ||||
Sbjct: 75825 agcttgcaggtttcaagatggaagtggtcaaaactacacatgctggtcatgcaaaatctc 75884

              
Query: 616   t 616
             |
Sbjct: 75885 t 75885

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                            
Query: 477      atacttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccatgaa 536
                |||||||| || ||||| ||||| |||||||||||| | || |  ||||||||||| | |
Sbjct: 19446895 atacttgtcatcttgaatcctcgatctggacatggtagatctagcaaagttttccacgga 19446954

                                 
Query: 537      aaagcagaacctatatt 553
                ||||  |||||||||||
Sbjct: 19446955 aaagtggaacctatatt 19446971



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                            
Query: 556      agcttgcaggttttcacatggagatagttaaaactactcatgctggtcatgcgaagtctc 615
                |||||||||||||  | |||||  | || |||||||| |||||||||||||| || ||||
Sbjct: 19447959 agcttgcaggtttcaagatggaagtggtcaaaactacacatgctggtcatgcaaaatctc 19448018

                 
Query: 616      t 616
                |
Sbjct: 19448019 t 19448019

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                            
Query: 477      atacttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccatgaa 536
                |||||||| || ||||| ||||| |||||||||||| | || |  ||||||||||| | |
Sbjct: 19458171 atacttgtcatcttgaatcctcgatctggacatggtagatctagcaaagttttccacgga 19458230

                                 
Query: 537      aaagcagaacctatatt 553
                ||||  |||||||||||
Sbjct: 19458231 aaagtggaacctatatt 19458247



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                            
Query: 556      agcttgcaggttttcacatggagatagttaaaactactcatgctggtcatgcgaagtctc 615
                |||||||||||||  | |||||  | || |||||||| |||||||||||||| || ||||
Sbjct: 19459235 agcttgcaggtttcaagatggaagtggtcaaaactacacatgctggtcatgcaaaatctc 19459294

                 
Query: 616      t 616
                |
Sbjct: 19459295 t 19459295

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>ref|NM_180734.1| Arabidopsis thaliana ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB)
            KINASE 1); diacylglycerol kinase AT5G23450 (ATLCBK1)
            transcript variant AT5G23450.1 mRNA, complete cds
          Length = 2814

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 480  cttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccat 533
            ||||| |||||||||||| | || |||||||| || || || ||||||||||||
Sbjct: 985  cttgtcatattgaaccctaggtcaggacatggacgatctatcaaagttttccat 1038

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>ref|NM_122252.2| Arabidopsis thaliana ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB)
            KINASE 1); diacylglycerol kinase AT5G23450 (ATLCBK1)
            transcript variant AT5G23450.2 mRNA, complete cds
          Length = 3008

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 480  cttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccat 533
            ||||| |||||||||||| | || |||||||| || || || ||||||||||||
Sbjct: 1179 cttgtcatattgaaccctaggtcaggacatggacgatctatcaaagttttccat 1232

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>ref|NM_001036852.1| Arabidopsis thaliana ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB)
            KINASE 1); diacylglycerol kinase AT5G23450 (ATLCBK1)
            transcript variant AT5G23450.3 mRNA, complete cds
          Length = 3071

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 480  cttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccat 533
            ||||| |||||||||||| | || |||||||| || || || ||||||||||||
Sbjct: 1207 cttgtcatattgaaccctaggtcaggacatggacgatctatcaaagttttccat 1260

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>gb|AY139759.1| Arabidopsis thaliana AT5g23450/K19M13_8 mRNA, complete cds
          Length = 2974

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 480  cttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccat 533
            ||||| |||||||||||| | || |||||||| || || || ||||||||||||
Sbjct: 1167 cttgtcatattgaaccctaggtcaggacatggacgatctatcaaagttttccat 1220

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>gb|AC087664.5| Homo sapiens chromosome 8, clone RP11-379I19, complete sequence
          Length = 199456

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 65     tgacaggaaaaataaaagtata 86
              ||||||||||||||||||||||
Sbjct: 106312 tgacaggaaaaataaaagtata 106291

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>dbj|AB046717.1| Arabidopsis thaliana AtLCBK1 mRNA for sphingosine kinase, complete
           cds
          Length = 2292

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 480 cttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccat 533
           ||||| |||||||||||| | || |||||||| || || || ||||||||||||
Sbjct: 751 cttgtcatattgaaccctaggtcaggacatggacgatctatcaaagttttccat 804

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>gb|BT004544.1| Arabidopsis thaliana AT5g23450/K19M13_8 gene, complete cds
          Length = 2292

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 480 cttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccat 533
           ||||| |||||||||||| | || |||||||| || || || ||||||||||||
Sbjct: 751 cttgtcatattgaaccctaggtcaggacatggacgatctatcaaagttttccat 804

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>dbj|AB018110.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M13
          Length = 42563

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 480   cttgttatattgaaccctcgttctggacatggtcggtcaattaaagttttccat 533
             ||||| |||||||||||| | || |||||||| || || || ||||||||||||
Sbjct: 29741 cttgtcatattgaaccctaggtcaggacatggacgatctatcaaagttttccat 29688

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>emb|AJ632313.1| Cotesia congregata virus complete genome, segment Circle10
          Length = 14286

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 101  tttgtcatcaaacaagaaagc 121
            |||||||||||||||||||||
Sbjct: 2715 tttgtcatcaaacaagaaagc 2735

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>emb|AJ640102.1| Cotesia congregata virus proviral CcBV PTPS gene for protein
           tyrosine phosphatase
          Length = 978

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 tttgtcatcaaacaagaaagc 121
           |||||||||||||||||||||
Sbjct: 445 tttgtcatcaaacaagaaagc 465

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>gb|AC080043.5| Homo sapiens chromosome , clone RP11-45M9, complete sequence
          Length = 161443

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    tttttgacaggaaaaataaaa 81
             |||||||||||||||||||||
Sbjct: 88734 tttttgacaggaaaaataaaa 88714

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>gb|AC090103.4| Homo sapiens chromosome 8, clone RP11-299D14, complete sequence
          Length = 161925

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    tttttgacaggaaaaataaaa 81
             |||||||||||||||||||||
Sbjct: 10437 tttttgacaggaaaaataaaa 10417

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>gb|AC023566.11| Homo sapiens chromosome 8, clone RP11-660D5, complete sequence
          Length = 184543

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 61     tttttgacaggaaaaataaaa 81
              |||||||||||||||||||||
Sbjct: 138291 tttttgacaggaaaaataaaa 138271

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>emb|CR760477.2| Xenopus tropicalis finished cDNA, clone TNeu071b17
          Length = 1169

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 420 ccccttggtggggttttattt 440
           |||||||||||||||||||||
Sbjct: 752 ccccttggtggggttttattt 772

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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     tttttgacaggaaaaataaaagta 84
              |||||||| |||||||||||||||
Sbjct: 770742 tttttgaccggaaaaataaaagta 770765

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>gb|AC115013.18| Mus musculus chromosome 10, clone RP24-193P19, complete sequence
          Length = 183402

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 563   aggttttcacatggagatagttaa 586
             ||||||||||||||| ||||||||
Sbjct: 85378 aggttttcacatggaaatagttaa 85401

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>gb|AC114002.4| Mus musculus BAC clone RP23-165H7 from 12, complete sequence
          Length = 200112

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   cccccttggtggggttttat 438
             ||||||||||||||||||||
Sbjct: 27883 cccccttggtggggttttat 27902

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>emb|AJ302074.2|SPN302074 Streptococcus pneumoniae bacteriophage MM1 complete genome
          Length = 40248

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 23  caattttgtaggtttcgaagtcta 46
           ||||||||| ||||||||||||||
Sbjct: 540 caattttgttggtttcgaagtcta 563

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>gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, complete sequence
          Length = 149542

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   cagaacctatatttaagctt 560
             ||||||||||||||||||||
Sbjct: 45876 cagaacctatatttaagctt 45857

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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     agctgatacaactgatgcaa 138
               ||||||||||||||||||||
Sbjct: 2410123 agctgatacaactgatgcaa 2410142

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>gb|AC023163.25| Homo sapiens 12 BAC RP11-239B4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 122882

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  cattttactttacatgcata 244
            ||||||||||||||||||||
Sbjct: 6303 cattttactttacatgcata 6284

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>emb|CR377948.1| Pinus pinaster SSR, clone PPB5A03r
          Length = 367

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 attttactttacatgcatat 245
           ||||||||||||||||||||
Sbjct: 177 attttactttacatgcatat 196

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>emb|CR377947.1| Pinus pinaster SSR, clone PPB5A03
          Length = 700

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 attttactttacatgcatat 245
           ||||||||||||||||||||
Sbjct: 599 attttactttacatgcatat 580

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 117      aaagctgatacaactgatgc 136
                ||||||||||||||||||||
Sbjct: 16544439 aaagctgatacaactgatgc 16544458

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>gb|AC155890.2| Medicago truncatula chromosome 7 BAC clone mth2-49p3, complete sequence
          Length = 127058

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aatttgtcatcaaacaagaa 118
             ||||||||||||||||||||
Sbjct: 32437 aatttgtcatcaaacaagaa 32456

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>gb|AC012508.10| Homo sapiens BAC clone RP11-521O16 from 2, complete sequence
          Length = 185967

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   caccaatcaaatccagaact 467
             ||||||||||||||||||||
Sbjct: 98838 caccaatcaaatccagaact 98857

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>gb|AC079353.5| Homo sapiens BAC clone RP11-1136K13 from 2, complete sequence
          Length = 113333

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   ttacatgcatatcctggtaa 253
             ||||||||||||||||||||
Sbjct: 12282 ttacatgcatatcctggtaa 12301

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>gb|AC102491.19| Mus musculus chromosome 1, clone RP24-529L13, complete sequence
          Length = 190728

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    gctggcaaactgttttttgacagg 71
             ||||||||||||||| ||||||||
Sbjct: 25828 gctggcaaactgtttcttgacagg 25805

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>gb|AC107397.5| Homo sapiens BAC clone RP11-703C14 from 4, complete sequence
          Length = 96372

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   ttttgacaggaaaaataaaagtat 85
            |||||| |||||||||||||||||
Sbjct: 5900 ttttgataggaaaaataaaagtat 5877

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>gb|AC005294.1| Homo sapiens 12 BAC GSHB-410F4 (Genome Systems Human Bac Library)
             complete sequence
          Length = 113762

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   cattttactttacatgcata 244
             ||||||||||||||||||||
Sbjct: 23205 cattttactttacatgcata 23224

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>dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0003B09
          Length = 161813

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   aaagctgatacaactgatgc 136
             ||||||||||||||||||||
Sbjct: 35059 aaagctgatacaactgatgc 35078

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>gb|AC153978.5| Mus musculus 10 BAC RP24-217I1 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 172497

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    tggcaaactgttttttgaca 69
             ||||||||||||||||||||
Sbjct: 67453 tggcaaactgttttttgaca 67434

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>gb|M98263.1|HUMDECOR01 Human decorin gene, exon 1
          Length = 4035

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  tatttggaaagacacataga 281
            ||||||||||||||||||||
Sbjct: 1249 tatttggaaagacacataga 1268

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>emb|AL805954.9| Mouse DNA sequence from clone RP23-277N22 on chromosome 4, complete
             sequence
          Length = 127548

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   gaagacacagatgcccccct 424
             ||||||||||||||||||||
Sbjct: 90951 gaagacacagatgcccccct 90932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,293,122
Number of Sequences: 3902068
Number of extensions: 6293122
Number of successful extensions: 122316
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122023
Number of HSP's gapped (non-prelim): 289
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result