ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bah62n08 |
|---|---|
| Clone Library Name | barley_pub |
>NAGS_HUMAN (Q8N159) N-acetylglutamate synthase, mitochondrial precursor (EC| 2.3.1.1) (Amino-acid acetyltransferase) [Contains: N-acetylglutamate synthase long form; N-acetylglutamate synthase short form; N-acetylglutamate synthase conserved domain form] Length = 534 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +3 Query: 339 GHFVEIATELNQ--AHTGSLYINCSLTETVSTSRSLLSAVNIVAGEPSHVWSTSSLFLQN 512 G V + T+L Q +GS+ I C + ET + LL ++ + A + T +FL N Sbjct: 236 GGIVSVETDLLQWCLESGSIPILCPIGETAARRSVLLDSLEVTASLAKALRPTKIIFLNN 295 Query: 513 DG 518 G Sbjct: 296 TG 297
>CAP11_ARATH (Q9C502) Putative clathrin assembly protein At1g33340| Length = 374 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 309 TSLIFSRTLSGHFVEIATELNQAHT-GSLYINCSLTETVSTSRSLLSAVNIVA 464 T L+F R L G I +L+ AHT G L I CS SRS + N VA Sbjct: 95 TLLLFHRLLRGSSRSIEQQLHIAHTSGHLQIGCSWFMMSLDSRSFVFLQNYVA 147
>NEP_IAGUN (O57266) Nuclear export protein (NEP) (Non structural protein 2)| (NS2) Length = 121 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +1 Query: 67 VKLYSKQIRELIWCAHAMESLTFSQGK-RNQISLKSERPSWDIDRVRHR 210 +KLY + E + + L GK R Q+S K E W I+ VRHR Sbjct: 38 LKLYRDLLGEAVMRMGDLHLLQSRNGKWREQLSQKFEEIRWSIEEVRHR 86
>COX1_PLACH (O99255) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 476 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = +2 Query: 248 DLIFATVLGLLMIFSRMLSGHFLDFLTYPLWTLCGDCNGAQP 373 ++IF TV G++MIF ++ G F F Y L LCG A P Sbjct: 60 NMIF-TVHGIIMIFFNIMPGLFGGFGNYYLPILCGSSELAYP 100
>CCHL_NEUCR (P14187) Cytochrome c heme lyase (EC 4.4.1.17) (CCHL)| (Holocytochrome-C synthase) Length = 346 Score = 29.6 bits (65), Expect = 6.7 Identities = 19/75 (25%), Positives = 34/75 (45%) Frame = -1 Query: 306 PESIREKIINNPNTVAKIRSIHVLHQGKNQKKSMTNPIYIPTWPLRFERDLVSFPLGKGE 127 PE+ + + P+ +K+ ++ + +Q+ + I +PT ERD S P G G+ Sbjct: 91 PENHQPAAASEPSFFSKLNPLNYMFSSISQEPAPNQAIALPT-----ERDPSSIPKGTGD 145 Query: 126 RFHGVSAPDQFPNLL 82 +P Q N L Sbjct: 146 GNWEYPSPQQMYNAL 160
>VGLM_HANTL (P16853) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1135 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = +3 Query: 102 LVRSRHGISHLFPGEKKPNLSQIGA--AKLGYRSGSSSISFDFFPDVKRESTLSL 260 + RS HG H GE+ S +G AK+ + + S ++S F + +S+LS+ Sbjct: 273 IFRSPHGEDHDLAGEETATYSIVGPANAKVPHSASSDTLSLIAFSGIPSDSSLSI 327
>DNAK_LISMO (Q9S5A4) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 612 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -1 Query: 333 GYVRKSRKCPESIREKIINNPNTVAKIRSIHVLHQGKNQKKSMTNPIYIP 184 G+ R+ E + I NPNT++ I+ H G N K+++ Y P Sbjct: 40 GFKNGERQVGEVAKRAAITNPNTISSIKR----HMGTNYKETIEGKDYSP 85
>DNAK_LISMF (Q71ZJ7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 612 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -1 Query: 333 GYVRKSRKCPESIREKIINNPNTVAKIRSIHVLHQGKNQKKSMTNPIYIP 184 G+ R+ E + I NPNT++ I+ H G N K+++ Y P Sbjct: 40 GFKNGERQVGEVAKRAAITNPNTISSIKR----HMGTNYKETIEGKDYSP 85
>DNAK_LISIN (Q92BN8) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 612 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -1 Query: 333 GYVRKSRKCPESIREKIINNPNTVAKIRSIHVLHQGKNQKKSMTNPIYIP 184 G+ R+ E + I NPNT++ I+ H G N K+++ Y P Sbjct: 40 GFKNGERQVGEVAKRAAITNPNTISSIKR----HMGTNYKETIEGKDYSP 85
>COX1_PLABE (O99252) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 476 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +2 Query: 248 DLIFATVLGLLMIFSRMLSGHFLDFLTYPLWTLCGDCNGAQP 373 ++IF T+ G++MIF ++ G F F Y L LCG A P Sbjct: 60 NMIF-TIHGIIMIFFNIMPGLFGGFGNYYLPILCGSSELAYP 100
>DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-)| (DEAH box protein 34) Length = 1145 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +1 Query: 136 SQGKRNQISLKSERPSWDIDRVRHRFLLIFSLM*NVNRPYLCNCIRI 276 SQ R+Q+S K H+ L SL+ N+PYL NC+RI Sbjct: 865 SQDGRDQMSCK------------HQLLAFVSLL-ETNKPYLVNCVRI 898
>PPN1_NEUCR (Q9P3S1) Endopolyphosphatase (EC 3.6.1.10)| Length = 734 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -3 Query: 385 PVWAWLSSVAISTKCPERVREKIKEVSREHT*ENH**S*YSCKDKVDSRFTSGKKSKEID 206 PVW + A+S + + R+K ++ R+H S D++D++ GKK K D Sbjct: 444 PVWRDAAKDAMSIELEQNDRQKHLDLKRQHP------SHMEDDDEIDAQKKKGKKHKGGD 497 Query: 205 DEP 197 +P Sbjct: 498 SKP 500
>KCNQ1_MOUSE (P97414) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 668 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 1 IRHEAHHHGLLLPSPQXKKSIFVK 72 +R A H LL PSP+ KKS+ VK Sbjct: 395 VRKPARSHTLLSPSPKPKKSVMVK 418
>KCNQ1_RAT (Q9Z0N7) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 669 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 1 IRHEAHHHGLLLPSPQXKKSIFVK 72 +R A H LL PSP+ KKS+ VK Sbjct: 396 VRKPARSHTLLSPSPKPKKSVMVK 419
>ADA1A_RAT (P43140) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor) Length = 466 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = -1 Query: 246 IHVLHQGKNQKKSMTNPIYIPTWPLRFE-RDLVSFPLGKGERFHGVSAPD 100 I L + ++ K ++ ++ P+ L + RD+V P+G GE F+ +S D Sbjct: 343 IQCLRRRQSSKHALGYTLHPPSQALEGQHRDMVRIPVGSGETFYKISKTD 392
>ADA1A_RABIT (O02824) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor) Length = 466 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -1 Query: 255 IRSIHVLHQGKNQKKSMTNPIYIPTWPLRFE-RDLVSFPLGKGERFHGVSAPD 100 + I L + ++ K ++ ++ P+ L + +D+V P+G GE F+ +S D Sbjct: 340 VLKIQCLRRKQSSKHALGYTLHAPSQALEGQHKDMVRIPVGSGETFYKISKTD 392 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,030,706 Number of Sequences: 219361 Number of extensions: 1781998 Number of successful extensions: 5052 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5052 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
