>Y1770_SYNY3 (P73627) Hypothetical protein sll1770|
          Length = 585

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 530 MGATYIKLGQFIASAPTFFPAEYVEE 607
           +G T+IK+GQ  ++    FPAEYVEE
Sbjct: 95  LGPTFIKVGQLFSTRSDLFPAEYVEE 120

>YHG1_CLOPA (Q46189) Hypothetical protein in hydrogenase 1 5'region (Fragment)|
          Length = 530

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 521 FERMGATYIKLGQFIASAPTFFPAEYVEE 607
           FE +G T+IK+GQ +++ P   P  Y++E
Sbjct: 40  FEELGPTFIKIGQILSTRPDLLPLPYIKE 68

>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C|
          Length = 1100

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 275  PGRSSARKP*PLPGPVVSYP-VRPRARPPSANLPHR 171
            PG  S   P P P   V+ P   P  RPPS   PHR
Sbjct: 991  PGMGSGEAPAPQPPEEVTVPPAPPNRRPPSPRRPHR 1026

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = -3

Query: 528 RSKSLLR*RGESKPSRI*AGIPSDVLAVFEKSFSHSPPTPRRTWIPCPILKTPRGP 361
           RS SL R R  S P R  +  P       ++ +S SPP  RRT  P P  K    P
Sbjct: 565 RSPSLPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASP 620

>Y095_SYNY3 (Q55884) Hypothetical protein sll0095|
          Length = 567

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 530 MGATYIKLGQFIASAPTFFPAEYVE 604
           +G T+IK+GQ +++     PAEY+E
Sbjct: 68  LGPTFIKIGQSLSTRADIIPAEYIE 92

>KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)|
          Length = 1097

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 275  PGRSSARKP*PLPGP-VVSYPVRPRARPPSANLPHR 171
            PG  S   P P P   V + P  P  RPPS   PHR
Sbjct: 988  PGMGSGEAPGPQPPEEVTAPPPPPNRRPPSPRRPHR 1023

>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 640

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 426 HSPPTPRRTWIPCPILKTPRGPVLIDVWRRSSTN--FGNSPA---LSWSRLEKSCAWE 268
           H  PT +RT+  C I  TP  P+   VW +   N  FG   A   +S  R +   AWE
Sbjct: 162 HPKPT-QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWE 218

>ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 638

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 426 HSPPTPRRTWIPCPILKTPRGPVLIDVWRRSSTN--FGNSPA---LSWSRLEKSCAWE 268
           H  PT +RT+  C I  TP  P+   VW +   N  FG   A   +S  R +   AWE
Sbjct: 162 HPKPT-QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWE 218

>PAN2_YEAST (P53010) PAB-dependent poly(A)-specific ribonuclease subunit PAN2|
           (EC 3.1.13.4) (PAB1P-dependent poly(A)-nuclease)
          Length = 1115

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 16/56 (28%)
 Frame = -3

Query: 423 SPPTPRRTWI-PCPILK----TPRGPVL--------IDVWRRSSTNFG---NSPAL 304
           S PT R  ++ PC  +K    +P G VL        +D WRRSS N G   N+P +
Sbjct: 285 SNPTLRTQYVHPCQSIKKLCLSPNGDVLGILEADNHLDTWRRSSNNMGMFTNTPEM 340

>TNFL6_FELCA (Q861W5) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) [Contains:
           Tumor necrosis factor ligand superfamily member 6,
           membrane form; Tumor necrosis factor ligand superfamily
           member 6, solub
          Length = 280

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 284 SLVPGRSSARKP*PLPGPVVSYPVRPRARPP 192
           S VPGR   R+P P P P +  P  P   PP
Sbjct: 34  SSVPGRPGQRRPPPPPPPTLPPPPPPPPLPP 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,859,067
Number of Sequences: 219361
Number of extensions: 1164825
Number of successful extensions: 3212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3177
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)