ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62m22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3588 Score = 1003 bits (506), Expect = 0.0 Identities = 563/582 (96%) Strand = Plus / Plus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 840 attgcatcgatcagcaatgataatcctgccctgatatcctgtgttgatgatgaacggctt 899 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 gaattccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 959 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccgttttcatttagcatcgaggaggac 181 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 960 gatggaaaaccaaggaaggttaaaaatgcaagaccgttttcatttagcatcgaggaggac 1019 Query: 182 acaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaagaaccaaag 241 |||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct: 1020 acaagtaactttggcatttatgtaaaaggtggaattgtcacacaagtgaaggaaccaaag 1079 Query: 242 gtgctatgtttcaaggcactaagagatgccatgacagatcctggagattttcttctgagt 301 |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1080 gtgctatgcttcaaggcactaagagatgccatgacagatcctggagaagttcttctgagt 1139 Query: 302 gacttctcaaagtttgagcgcccccctgtgcttcacctggcatttcaagctctggacaaa 361 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1140 gacttctcaaagtttgagcgcccccctgtgcttcatctggcatttcaagctctggacaaa 1199 Query: 362 tttaagaaagaccatggacgctgccctgctgctggttgtgagcaggatgctcaaagtttt 421 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 1200 tttaagaaagaccatggacgctgccctgctgctggttgtgaggaggatgctcatagtttt 1259 Query: 422 ctgaagattgctgctgctattaatgaaacttcagctgatcgcaagctggacactattgat 481 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 1260 ctgaagattgctgctgctattaatgaagcctcagctgatcgcaagctggacactattgat 1319 Query: 482 gagaaactattccaacagtttgcaagtggttctcgagctgttttgaaccctatggctgcg 541 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1320 gagaaactattccgacagtttgcaagtggttctcgagctgtattgaaccctatggctgcg 1379 Query: 542 atgtttggtggtattgttggtcaagaagttgtgaaggcttgt 583 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1380 atgtttggtggtattgttggtcaagaagttgtgaaggcttgt 1421
>ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3522 Score = 551 bits (278), Expect = e-154 Identities = 503/578 (87%) Strand = Plus / Plus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||||||||||||||| |||||||| || | |||||||| ||||||||||||||| Sbjct: 853 attgcatccatcagcaatgacaaccctgcgttggtgtcctgtgtagatgatgaacggctt 912 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 ||||| || || |||||| |||| |||||||||||||||||||||||| | || | ||| Sbjct: 913 gagtttcaggacggtgattttgtggttttctctgaggtccatggtatggctgagttaaat 972 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccgttttcatttagcatcgaggaggac 181 ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| || Sbjct: 973 gatggaaaaccaaggaaggttaaaaatgcaaggccattttcattttgcattgaggaagat 1032 Query: 182 acaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaagaaccaaag 241 |||| ||| | || || || ||||||||||||| || |||||| | || || |||||| Sbjct: 1033 acaactaaatatgacatgtatataaaaggtggaatcgttacacagatcaaggagccaaag 1092 Query: 242 gtgctatgtttcaaggcactaagagatgccatgacagatcctggagattttcttctgagt 301 | ||| | |||||| ||||||||||||| |||| ||||||||||||||| ||||||||| Sbjct: 1093 atactacgattcaagtcactaagagatgctatgagagatcctggagatttccttctgagt 1152 Query: 302 gacttctcaaagtttgagcgcccccctgtgcttcacctggcatttcaagctctggacaaa 361 |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| || Sbjct: 1153 gacttctctaagtttgaacgttcccccgtgcttcacctagcatttcaagctctggataag 1212 Query: 362 tttaagaaagaccatggacgctgccctgctgctggttgtgagcaggatgctcaaagtttt 421 ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 1213 tttaagaaagaatatggacgctaccctgctcctggttgtgagcaggatgctcaaagtttc 1272 Query: 422 ctgaagattgctgctgctattaatgaaacttcagctgatcgcaagctggacactattgat 481 || ||| |||||||| |||||| ||| | | | |||||| ||||||||| || |||||| Sbjct: 1273 cttaagtgtgctgctgatattaacgaagccttaactgatcacaagctggatacaattgat 1332 Query: 482 gagaaactattccaacagtttgcaagtggttctcgagctgttttgaaccctatggctgcg 541 ||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 1333 gagaagttattcagacatttcgcaagtggttctcgagctgttttgaaccctatggctgca 1392 Query: 542 atgtttggtggtattgttggtcaagaagttgtgaaggc 579 |||||||||||||||||||||||||||||||||||||| Sbjct: 1393 atgtttggtggtattgttggtcaagaagttgtgaaggc 1430
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 551 bits (278), Expect = e-154 Identities = 503/578 (87%) Strand = Plus / Plus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||||||||||||||| |||||||| || | |||||||| ||||||||||||||| Sbjct: 29426523 attgcatccatcagcaatgacaaccctgcgttggtgtcctgtgtagatgatgaacggctt 29426582 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 ||||| || || |||||| |||| |||||||||||||||||||||||| | || | ||| Sbjct: 29426583 gagtttcaggacggtgattttgtggttttctctgaggtccatggtatggctgagttaaat 29426642 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccgttttcatttagcatcgaggaggac 181 ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| || Sbjct: 29426643 gatggaaaaccaaggaaggttaaaaatgcaaggccattttcattttgcattgaggaagat 29426702 Query: 182 acaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaagaaccaaag 241 |||| ||| | || || || ||||||||||||| || |||||| | || || |||||| Sbjct: 29426703 acaactaaatatgacatgtatataaaaggtggaatcgttacacagatcaaggagccaaag 29426762 Query: 242 gtgctatgtttcaaggcactaagagatgccatgacagatcctggagattttcttctgagt 301 | ||| | |||||| ||||||||||||| |||| ||||||||||||||| ||||||||| Sbjct: 29426763 atactacgattcaagtcactaagagatgctatgagagatcctggagatttccttctgagt 29426822 Query: 302 gacttctcaaagtttgagcgcccccctgtgcttcacctggcatttcaagctctggacaaa 361 |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| || Sbjct: 29426823 gacttctctaagtttgaacgttcccccgtgcttcacctagcatttcaagctctggataag 29426882 Query: 362 tttaagaaagaccatggacgctgccctgctgctggttgtgagcaggatgctcaaagtttt 421 ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 29426883 tttaagaaagaatatggacgctaccctgctcctggttgtgagcaggatgctcaaagtttc 29426942 Query: 422 ctgaagattgctgctgctattaatgaaacttcagctgatcgcaagctggacactattgat 481 || ||| |||||||| |||||| ||| | | | |||||| ||||||||| || |||||| Sbjct: 29426943 cttaagtgtgctgctgatattaacgaagccttaactgatcacaagctggatacaattgat 29427002 Query: 482 gagaaactattccaacagtttgcaagtggttctcgagctgttttgaaccctatggctgcg 541 ||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 29427003 gagaagttattcagacatttcgcaagtggttctcgagctgttttgaaccctatggctgca 29427062 Query: 542 atgtttggtggtattgttggtcaagaagttgtgaaggc 579 |||||||||||||||||||||||||||||||||||||| Sbjct: 29427063 atgtttggtggtattgttggtcaagaagttgtgaaggc 29427100
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 551 bits (278), Expect = e-154 Identities = 503/578 (87%) Strand = Plus / Plus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||||||||||||||| |||||||| || | |||||||| ||||||||||||||| Sbjct: 89445 attgcatccatcagcaatgacaaccctgcgttggtgtcctgtgtagatgatgaacggctt 89504 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 ||||| || || |||||| |||| |||||||||||||||||||||||| | || | ||| Sbjct: 89505 gagtttcaggacggtgattttgtggttttctctgaggtccatggtatggctgagttaaat 89564 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccgttttcatttagcatcgaggaggac 181 ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| || Sbjct: 89565 gatggaaaaccaaggaaggttaaaaatgcaaggccattttcattttgcattgaggaagat 89624 Query: 182 acaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaagaaccaaag 241 |||| ||| | || || || ||||||||||||| || |||||| | || || |||||| Sbjct: 89625 acaactaaatatgacatgtatataaaaggtggaatcgttacacagatcaaggagccaaag 89684 Query: 242 gtgctatgtttcaaggcactaagagatgccatgacagatcctggagattttcttctgagt 301 | ||| | |||||| ||||||||||||| |||| ||||||||||||||| ||||||||| Sbjct: 89685 atactacgattcaagtcactaagagatgctatgagagatcctggagatttccttctgagt 89744 Query: 302 gacttctcaaagtttgagcgcccccctgtgcttcacctggcatttcaagctctggacaaa 361 |||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| || Sbjct: 89745 gacttctctaagtttgaacgttcccccgtgcttcacctagcatttcaagctctggataag 89804 Query: 362 tttaagaaagaccatggacgctgccctgctgctggttgtgagcaggatgctcaaagtttt 421 ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 89805 tttaagaaagaatatggacgctaccctgctcctggttgtgagcaggatgctcaaagtttc 89864 Query: 422 ctgaagattgctgctgctattaatgaaacttcagctgatcgcaagctggacactattgat 481 || ||| |||||||| |||||| ||| | | | |||||| ||||||||| || |||||| Sbjct: 89865 cttaagtgtgctgctgatattaacgaagccttaactgatcacaagctggatacaattgat 89924 Query: 482 gagaaactattccaacagtttgcaagtggttctcgagctgttttgaaccctatggctgcg 541 ||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 89925 gagaagttattcagacatttcgcaagtggttctcgagctgttttgaaccctatggctgca 89984 Query: 542 atgtttggtggtattgttggtcaagaagttgtgaaggc 579 |||||||||||||||||||||||||||||||||||||| Sbjct: 89985 atgtttggtggtattgttggtcaagaagttgtgaaggc 90022
>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full insert sequence Length = 3522 Score = 537 bits (271), Expect = e-149 Identities = 503/579 (86%), Gaps = 1/579 (0%) Strand = Plus / Plus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||||||||||||||| |||||||| || | |||||||| ||||||||||||||| Sbjct: 853 attgcatccatcagcaatgacaaccctgcgttggtgtcctgtgtagatgatgaacggctt 912 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 ||||| || || |||||| |||| |||||||||||||||||||||||| | || | ||| Sbjct: 913 gagtttcaggacggtgattttgtggttttctctgaggtccatggtatggctgagttaaat 972 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccg-ttttcatttagcatcgaggagga 180 ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| || Sbjct: 973 gatggaaaaccaaggaaggttaaaaatgcaaggcccattttcattttgcattgaggaaga 1032 Query: 181 cacaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaagaaccaaa 240 |||| ||| | || || || ||||||||||||| || |||||| | || || ||||| Sbjct: 1033 tacaactaaatatgacatgtatataaaaggtggaatcgttacacagatcaaggagccaaa 1092 Query: 241 ggtgctatgtttcaaggcactaagagatgccatgacagatcctggagattttcttctgag 300 | | ||| | |||||| ||||||||||||| |||| ||||||||||||||| |||||||| Sbjct: 1093 gatactacgattcaagtcactaagagatgctatgagagatcctggagatttccttctgag 1152 Query: 301 tgacttctcaaagtttgagcgcccccctgtgcttcacctggcatttcaagctctggacaa 360 ||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| || Sbjct: 1153 tgacttctctaagtttgaacgttcccccgtgcttcacctagcatttcaagctctggataa 1212 Query: 361 atttaagaaagaccatggacgctgccctgctgctggttgtgagcaggatgctcaaagttt 420 ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 1213 gtttaagaaagaatatggacgctaccctgctcctggttgtgagcaggatgctcaaagttt 1272 Query: 421 tctgaagattgctgctgctattaatgaaacttcagctgatcgcaagctggacactattga 480 || ||| |||||||| |||||| ||| | | | |||||| ||||||||| || ||||| Sbjct: 1273 ccttaagtgtgctgctgatattaacgaagccttaactgatcacaagctggatacaattga 1332 Query: 481 tgagaaactattccaacagtttgcaagtggttctcgagctgttttgaaccctatggctgc 540 |||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 1333 tgagaagttattcagacatttcgcaagtggttctcgagctgttttgaaccctatggctgc 1392 Query: 541 gatgtttggtggtattgttggtcaagaagttgtgaaggc 579 |||||||||||||||||||||||||||||||||||||| Sbjct: 1393 aatgtttggtggtattgttggtcaagaagttgtgaaggc 1431
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 232 bits (117), Expect = 1e-57 Identities = 204/233 (87%) Strand = Plus / Minus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||||||||||||||| || |||||| |||||||||| ||||||||||| || ||| Sbjct: 10274628 attgcatccatcagcaatgacaatcctgcaatgatatcctgcgttgatgatgagcgcctt 10274569 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 || ||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||| Sbjct: 10274568 gaattccaagatggtgatcttgttgtcttctcagaggtccaagggatgacagaactaaat 10274509 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccgttttcatttagcatcgaggaggac 181 ||||| || ||||||||| | | |||||||||||| | ||||||| ||||| ||||||| Sbjct: 10274508 gatggcaagccaaggaagataataaatgcaaggccatattcattttgcatccaggaggat 10274449 Query: 182 acaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaaga 234 |||||||| ||||| | ||| | ||||||||||||||| || ||||||||||| Sbjct: 10274448 acaagtaaatttggtatttatgcaaaaggtggaattgttactcaggtgaaaga 10274396 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 ||||||||||||||| |||||||| | ||||| |||||||||||||||||||| ||||| Sbjct: 10274130 tttgcaagtggttctagagctgttctaaacccaatggctgcgatgtttggtggcattgtc 10274071 Query: 560 ggtcaagaagttgtgaaggc 579 || ||||||||||| ||||| Sbjct: 10274070 ggccaagaagttgttaaggc 10274051
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 232 bits (117), Expect = 1e-57 Identities = 204/233 (87%) Strand = Plus / Minus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||||||||||||||| || |||||| |||||||||| ||||||||||| || ||| Sbjct: 136041 attgcatccatcagcaatgacaatcctgcaatgatatcctgcgttgatgatgagcgcctt 135982 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 || ||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||| Sbjct: 135981 gaattccaagatggtgatcttgttgtcttctcagaggtccaagggatgacagaactaaat 135922 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccgttttcatttagcatcgaggaggac 181 ||||| || ||||||||| | | |||||||||||| | ||||||| ||||| ||||||| Sbjct: 135921 gatggcaagccaaggaagataataaatgcaaggccatattcattttgcatccaggaggat 135862 Query: 182 acaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaaga 234 |||||||| ||||| | ||| | ||||||||||||||| || ||||||||||| Sbjct: 135861 acaagtaaatttggtatttatgcaaaaggtggaattgttactcaggtgaaaga 135809 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 ||||||||||||||| |||||||| | ||||| |||||||||||||||||||| ||||| Sbjct: 135543 tttgcaagtggttctagagctgttctaaacccaatggctgcgatgtttggtggcattgtc 135484 Query: 560 ggtcaagaagttgtgaaggc 579 || ||||||||||| ||||| Sbjct: 135483 ggccaagaagttgttaaggc 135464
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 232 bits (117), Expect = 1e-57 Identities = 204/233 (87%) Strand = Plus / Minus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||||||||||||||| || |||||| |||||||||| ||||||||||| || ||| Sbjct: 10272729 attgcatccatcagcaatgacaatcctgcaatgatatcctgcgttgatgatgagcgcctt 10272670 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 || ||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||| Sbjct: 10272669 gaattccaagatggtgatcttgttgtcttctcagaggtccaagggatgacagaactaaat 10272610 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccgttttcatttagcatcgaggaggac 181 ||||| || ||||||||| | | |||||||||||| | ||||||| ||||| ||||||| Sbjct: 10272609 gatggcaagccaaggaagataataaatgcaaggccatattcattttgcatccaggaggat 10272550 Query: 182 acaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaaga 234 |||||||| ||||| | ||| | ||||||||||||||| || ||||||||||| Sbjct: 10272549 acaagtaaatttggtatttatgcaaaaggtggaattgttactcaggtgaaaga 10272497 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 ||||||||||||||| |||||||| | ||||| |||||||||||||||||||| ||||| Sbjct: 10272231 tttgcaagtggttctagagctgttctaaacccaatggctgcgatgtttggtggcattgtc 10272172 Query: 560 ggtcaagaagttgtgaaggc 579 || ||||||||||| ||||| Sbjct: 10272171 ggccaagaagttgttaaggc 10272152
>dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full insert sequence Length = 3682 Score = 232 bits (117), Expect = 1e-57 Identities = 204/233 (87%) Strand = Plus / Plus Query: 2 attgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggctt 61 |||||||||||||||||||| || |||||| |||||||||| ||||||||||| || ||| Sbjct: 892 attgcatccatcagcaatgacaatcctgcaatgatatcctgcgttgatgatgagcgcctt 951 Query: 62 gagttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaat 121 || ||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||| Sbjct: 952 gaattccaagatggtgatcttgttgtcttctcagaggtccaagggatgacagaactaaat 1011 Query: 122 gatggaaaaccaaggaaggttaaaaatgcaaggccgttttcatttagcatcgaggaggac 181 ||||| || ||||||||| | | |||||||||||| | ||||||| ||||| ||||||| Sbjct: 1012 gatggcaagccaaggaagataataaatgcaaggccatattcattttgcatccaggaggat 1071 Query: 182 acaagtaactttggcacttacgtaaaaggtggaattgtcacacaggtgaaaga 234 |||||||| ||||| | ||| | ||||||||||||||| || ||||||||||| Sbjct: 1072 acaagtaaatttggtatttatgcaaaaggtggaattgttactcaggtgaaaga 1124 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 ||||||||||||||| |||||||| | ||||| |||||||||||||||||||| ||||| Sbjct: 1390 tttgcaagtggttctagagctgttctaaacccaatggctgcgatgtttggtggcattgtc 1449 Query: 560 ggtcaagaagttgtgaaggc 579 || ||||||||||| ||||| Sbjct: 1450 ggccaagaagttgttaaggc 1469
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 139 bits (70), Expect = 1e-29 Identities = 133/154 (86%) Strand = Plus / Plus Query: 3 ttgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttg 62 ||||||| ||||||||||| || || ||||| |||| ||||| || ||||| || || | Sbjct: 829 ttgcatcaatcagcaatgacaatccagcacttgtatcttgtgtggacgatgagcgtctgg 888 Query: 63 agttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatg 122 ||||||| ||||||||||| |||||||||||||| |||||||| ||||| || ||||||| Sbjct: 889 agttccaggatggtgatctagttgttttctctgaagtccatggaatgactgagctgaatg 948 Query: 123 atggaaaaccaaggaaggttaaaaatgcaaggcc 156 ||||||||||||| || ||||| ||||||||||| Sbjct: 949 atggaaaaccaagaaaagttaagaatgcaaggcc 982 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 ||||| |||||||| | |||||| |||| ||||||||||||||||||||||||||||| Sbjct: 1326 tttgccagtggttccagggctgttctgaatcctatggctgcgatgtttggtggtattgtg 1385 Query: 560 ggtcaagaagttgtgaaggcttg 582 ||||| || || ||||| ||||| Sbjct: 1386 ggtcaggaggtagtgaaagcttg 1408
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 139 bits (70), Expect = 1e-29 Identities = 133/154 (86%) Strand = Plus / Plus Query: 3 ttgcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttg 62 ||||||| ||||||||||| || || ||||| |||| ||||| || ||||| || || | Sbjct: 924 ttgcatcaatcagcaatgacaatccagcacttgtatcttgtgtggacgatgagcgcctgg 983 Query: 63 agttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatg 122 ||||||| ||||||||||| |||||||||||||| |||||||| ||||| || ||||||| Sbjct: 984 agttccaggatggtgatctagttgttttctctgaagtccatggaatgactgagctgaatg 1043 Query: 123 atggaaaaccaaggaaggttaaaaatgcaaggcc 156 ||||||||||||| || ||||| ||||||||||| Sbjct: 1044 atggaaaaccaagaaaagttaagaatgcaaggcc 1077 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 ||||| |||||||| | |||||| |||| ||||||||||||||||||||||||||||| Sbjct: 1421 tttgccagtggttccagggctgttctgaatcctatggctgcgatgtttggtggtattgtc 1480 Query: 560 ggtcaagaagttgtgaaggcttg 582 ||||| || || ||||| ||||| Sbjct: 1481 ggtcaggaggtagtgaaagcttg 1503
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 5 gcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttgag 64 ||||| ||||||||||| |||||||| || | ||||||||||||||||| || || ||| Sbjct: 315003 gcatcgatcagcaatgacaaccctgcgcttgtttcctgtgttgatgatgagcgtctggag 314944 Query: 65 ttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatgat 124 ||||| ||||||||| | ||||| ||||| || |||||||| |||| ||||| |||||| Sbjct: 314943 ttccaggatggtgatttagttgtgttctcagaagtccatggaatgagtgaactaaatgat 314884 Query: 125 ggaaaaccaaggaaggttaa 144 || |||||||| ||| |||| Sbjct: 314883 gggaaaccaagaaagattaa 314864 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 |||||||||||||| | |||||| |||||||||||||||| ||||||||||| ||||| Sbjct: 314645 tttgcaagtggttccagggctgttctgaaccctatggctgcaatgtttggtggcattgta 314586 Query: 560 ggtcaagaagttgtgaa 576 |||||||| |||||||| Sbjct: 314585 ggtcaagaggttgtgaa 314569
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 5 gcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttgag 64 ||||| ||||||||||| |||||||| || | ||||||||||||||||| || || ||| Sbjct: 298038 gcatcgatcagcaatgacaaccctgcgcttgtttcctgtgttgatgatgagcgtctggag 297979 Query: 65 ttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatgat 124 ||||| ||||||||| | ||||| ||||| || |||||||| |||| ||||| |||||| Sbjct: 297978 ttccaggatggtgatttagttgtgttctcagaagtccatggaatgagtgaactaaatgat 297919 Query: 125 ggaaaaccaaggaaggttaa 144 || |||||||| ||| |||| Sbjct: 297918 gggaaaccaagaaagattaa 297899 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 |||||||||||||| | |||||| |||||||||||||||| ||||||||||| ||||| Sbjct: 297543 tttgcaagtggttccagggctgttctgaaccctatggctgcaatgtttggtggcattgta 297484 Query: 560 ggtcaagaagttgtgaa 576 |||||||| |||||||| Sbjct: 297483 ggtcaagaggttgtgaa 297467
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 5 gcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttgag 64 ||||| ||||||||||| |||||||| || | ||||||||||||||||| || || ||| Sbjct: 963 gcatcgatcagcaatgacaaccctgcgcttgtttcctgtgttgatgatgagcgtctggag 1022 Query: 65 ttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatgat 124 ||||| ||||||||| | ||||| ||||| || |||||||| |||| ||||| |||||| Sbjct: 1023 ttccaggatggtgatttagttgtgttctcagaagtccatggaatgagtgaactaaatgat 1082 Query: 125 ggaaaaccaaggaaggttaa 144 || |||||||| ||| |||| Sbjct: 1083 gggaaaccaagaaagattaa 1102 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 |||||||||||||| | |||||| |||||||||||||||| ||||||||||| ||||| Sbjct: 1458 tttgcaagtggttccagggctgttctgaaccctatggctgcaatgtttggtggcattgta 1517 Query: 560 ggtcaagaagttgtgaa 576 |||||||| |||||||| Sbjct: 1518 ggtcaagaggttgtgaa 1534
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 5 gcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttgag 64 ||||| ||||||||||| |||||||| || | ||||||||||||||||| || || ||| Sbjct: 298038 gcatcgatcagcaatgacaaccctgcgcttgtttcctgtgttgatgatgagcgtctggag 297979 Query: 65 ttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatgat 124 ||||| ||||||||| | ||||| ||||| || |||||||| |||| ||||| |||||| Sbjct: 297978 ttccaggatggtgatttagttgtgttctcagaagtccatggaatgagtgaactaaatgat 297919 Query: 125 ggaaaaccaaggaaggttaa 144 || |||||||| ||| |||| Sbjct: 297918 gggaaaccaagaaagattaa 297899 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 |||||||||||||| | |||||| |||||||||||||||| ||||||||||| ||||| Sbjct: 297543 tttgcaagtggttccagggctgttctgaaccctatggctgcaatgtttggtggcattgta 297484 Query: 560 ggtcaagaagttgtgaa 576 |||||||| |||||||| Sbjct: 297483 ggtcaagaggttgtgaa 297467
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 5 gcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttgag 64 ||||| ||||||||||| |||||||| || | ||||||||||||||||| || || ||| Sbjct: 315003 gcatcgatcagcaatgacaaccctgcgcttgtttcctgtgttgatgatgagcgtctggag 314944 Query: 65 ttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatgat 124 ||||| ||||||||| | ||||| ||||| || |||||||| |||| ||||| |||||| Sbjct: 314943 ttccaggatggtgatttagttgtgttctcagaagtccatggaatgagtgaactaaatgat 314884 Query: 125 ggaaaaccaaggaaggttaa 144 || |||||||| ||| |||| Sbjct: 314883 gggaaaccaagaaagattaa 314864 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 |||||||||||||| | |||||| |||||||||||||||| ||||||||||| ||||| Sbjct: 314645 tttgcaagtggttccagggctgttctgaaccctatggctgcaatgtttggtggcattgta 314586 Query: 560 ggtcaagaagttgtgaa 576 |||||||| |||||||| Sbjct: 314585 ggtcaagaggttgtgaa 314569
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 5 gcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttgag 64 ||||| ||||||||||| |||||||| || | ||||||||||||||||| || || ||| Sbjct: 6955 gcatcgatcagcaatgacaaccctgcgcttgtttcctgtgttgatgatgagcgtctggag 7014 Query: 65 ttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatgat 124 ||||| ||||||||| | ||||| ||||| || |||||||| |||| ||||| |||||| Sbjct: 7015 ttccaggatggtgatttagttgtgttctcagaagtccatggaatgagtgaactaaatgat 7074 Query: 125 ggaaaaccaaggaaggttaa 144 || |||||||| ||| |||| Sbjct: 7075 gggaaaccaagaaagattaa 7094 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 |||||||||||||| | |||||| |||||||||||||||| ||||||||||| ||||| Sbjct: 7450 tttgcaagtggttccagggctgttctgaaccctatggctgcaatgtttggtggcattgta 7509 Query: 560 ggtcaagaagttgtgaa 576 |||||||| |||||||| Sbjct: 7510 ggtcaagaggttgtgaa 7526
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 5 gcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttgag 64 ||||| ||||||||||| |||||||| || | ||||||||||||||||| || || ||| Sbjct: 48054 gcatcgatcagcaatgacaaccctgcgcttgtttcctgtgttgatgatgagcgtctggag 47995 Query: 65 ttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatgat 124 ||||| ||||||||| | ||||| ||||| || |||||||| |||| ||||| |||||| Sbjct: 47994 ttccaggatggtgatttagttgtgttctcagaagtccatggaatgagtgaactaaatgat 47935 Query: 125 ggaaaaccaaggaaggttaa 144 || |||||||| ||| |||| Sbjct: 47934 gggaaaccaagaaagattaa 47915 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 |||||||||||||| | |||||| |||||||||||||||| ||||||||||| ||||| Sbjct: 47696 tttgcaagtggttccagggctgttctgaaccctatggctgcaatgtttggtggcattgta 47637 Query: 560 ggtcaagaagttgtgaa 576 |||||||| |||||||| Sbjct: 47636 ggtcaagaggttgtgaa 47620
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 5 gcatccatcagcaatgataaccctgcactgatatcctgtgttgatgatgaacggcttgag 64 ||||| ||||||||||| |||||||| || | ||||||||||||||||| || || ||| Sbjct: 5356 gcatcgatcagcaatgacaaccctgcgcttgtttcctgtgttgatgatgagcgtctggag 5297 Query: 65 ttccaagatggtgatcttgttgttttctctgaggtccatggtatgacagaactgaatgat 124 ||||| ||||||||| | ||||| ||||| || |||||||| |||| ||||| |||||| Sbjct: 5296 ttccaggatggtgatttagttgtgttctcagaagtccatggaatgagtgaactaaatgat 5237 Query: 125 ggaaaaccaaggaaggttaa 144 || |||||||| ||| |||| Sbjct: 5236 gggaaaccaagaaagattaa 5217 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 500 tttgcaagtggttctcgagctgttttgaaccctatggctgcgatgtttggtggtattgtt 559 |||||||||||||| | |||||| |||||||||||||||| ||||||||||| ||||| Sbjct: 4861 tttgcaagtggttccagggctgttctgaaccctatggctgcaatgtttggtggcattgta 4802 Query: 560 ggtcaagaagttgtgaa 576 |||||||| |||||||| Sbjct: 4801 ggtcaagaggttgtgaa 4785
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 87.7 bits (44), Expect = 4e-14 Identities = 164/204 (80%) Strand = Plus / Plus Query: 38 tcctgtgttgatgatgaacggcttgagttccaagatggtgatcttgttgttttctctgag 97 |||||||| || ||||| |||||||||| |||||||||| || ||||||||||| || Sbjct: 895 tcctgtgtcgacgatgagaggcttgagtttgaagatggtgacctagttgttttctcagaa 954 Query: 98 gtccatggtatgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccg 157 || | |||||||||||| |||||||||| |||||||||||| | |||| | || |||| Sbjct: 955 gttgagggtatgacagaattgaatgatgggaaaccaaggaagataaaaagtacacggcca 1014 Query: 158 ttttcatttagcatcgaggaggacacaagtaactttggcacttacgtaaaaggtggaatt 217 | |||||| | | | || |||||||| | ||||| ||| || || || || ||||| ||| Sbjct: 1015 tattcattcacccttgatgaggacactactaactatggaacatatgtgaagggtggtatt 1074 Query: 218 gtcacacaggtgaaagaaccaaag 241 ||||| || |||||| | |||||| Sbjct: 1075 gtcactcaagtgaaacagccaaag 1098 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 525 tgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggcttg 582 |||| ||||||||||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct: 1382 tgaatcctatggctgcaatgtttggcggtattgttggacaggaggttgttaaagcttg 1439
>emb|Y10804.1|NTUAEE1 N.tabaccum mRNA for ubiquitin activating enzyme E1 Length = 3559 Score = 87.7 bits (44), Expect = 4e-14 Identities = 53/56 (94%) Strand = Plus / Plus Query: 527 aaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggcttg 582 ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 1367 aacccaatggctgctatgtttggtggtattgttgggcaagaagttgtgaaggcttg 1422 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 278 gatcctggagattttcttctgagtgacttctcaaagtttgagcgccc 324 |||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 1118 gatcctggtgactttcttctgagtgacttctccaagtttgaccgccc 1164 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 107 atgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccgttttcattt 166 |||||||||||||||||||| || || || || | |||||||| ||||| | ||||||| Sbjct: 947 atgacagaactgaatgatgggaagcctagaaaaataaaaaatgcgaggccatattcattt 1006 Query: 167 a 167 | Sbjct: 1007 a 1007
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 87.7 bits (44), Expect = 4e-14 Identities = 164/204 (80%) Strand = Plus / Plus Query: 38 tcctgtgttgatgatgaacggcttgagttccaagatggtgatcttgttgttttctctgag 97 |||||||| || ||||| |||||||||| |||||||||| || ||||||||||| || Sbjct: 49701 tcctgtgtcgacgatgagaggcttgagtttgaagatggtgacctagttgttttctcagaa 49760 Query: 98 gtccatggtatgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccg 157 || | |||||||||||| |||||||||| |||||||||||| | |||| | || |||| Sbjct: 49761 gttgagggtatgacagaattgaatgatgggaaaccaaggaagataaaaagtacacggcca 49820 Query: 158 ttttcatttagcatcgaggaggacacaagtaactttggcacttacgtaaaaggtggaatt 217 | |||||| | | | || |||||||| | ||||| ||| || || || || ||||| ||| Sbjct: 49821 tattcattcacccttgatgaggacactactaactatggaacatatgtgaagggtggtatt 49880 Query: 218 gtcacacaggtgaaagaaccaaag 241 ||||| || |||||| | |||||| Sbjct: 49881 gtcactcaagtgaaacagccaaag 49904 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 525 tgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggcttg 582 |||| ||||||||||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct: 50188 tgaatcctatggctgcaatgtttggcggtattgttggacaggaggttgttaaagcttg 50245
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 87.7 bits (44), Expect = 4e-14 Identities = 164/204 (80%) Strand = Plus / Plus Query: 38 tcctgtgttgatgatgaacggcttgagttccaagatggtgatcttgttgttttctctgag 97 |||||||| || ||||| |||||||||| |||||||||| || ||||||||||| || Sbjct: 856 tcctgtgtcgacgatgagaggcttgagtttgaagatggtgacctagttgttttctcagaa 915 Query: 98 gtccatggtatgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccg 157 || | |||||||||||| |||||||||| |||||||||||| | |||| | || |||| Sbjct: 916 gttgagggtatgacagaattgaatgatgggaaaccaaggaagataaaaagtacacggcca 975 Query: 158 ttttcatttagcatcgaggaggacacaagtaactttggcacttacgtaaaaggtggaatt 217 | |||||| | | | || |||||||| | ||||| ||| || || || || ||||| ||| Sbjct: 976 tattcattcacccttgatgaggacactactaactatggaacatatgtgaagggtggtatt 1035 Query: 218 gtcacacaggtgaaagaaccaaag 241 ||||| || |||||| | |||||| Sbjct: 1036 gtcactcaagtgaaacagccaaag 1059 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 525 tgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggcttg 582 |||| ||||||||||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct: 1343 tgaatcctatggctgcaatgtttggcggtattgttggacaggaggttgttaaagcttg 1400
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 87.7 bits (44), Expect = 4e-14 Identities = 164/204 (80%) Strand = Plus / Plus Query: 38 tcctgtgttgatgatgaacggcttgagttccaagatggtgatcttgttgttttctctgag 97 |||||||| || ||||| |||||||||| |||||||||| || ||||||||||| || Sbjct: 772 tcctgtgtcgacgatgagaggcttgagtttgaagatggtgacctagttgttttctcagaa 831 Query: 98 gtccatggtatgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccg 157 || | |||||||||||| |||||||||| |||||||||||| | |||| | || |||| Sbjct: 832 gttgagggtatgacagaattgaatgatgggaaaccaaggaagataaaaagtacacggcca 891 Query: 158 ttttcatttagcatcgaggaggacacaagtaactttggcacttacgtaaaaggtggaatt 217 | |||||| | | | || |||||||| | ||||| ||| || || || || ||||| ||| Sbjct: 892 tattcattcacccttgatgaggacactactaactatggaacatatgtgaagggtggtatt 951 Query: 218 gtcacacaggtgaaagaaccaaag 241 ||||| || |||||| | |||||| Sbjct: 952 gtcactcaagtgaaacagccaaag 975 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 525 tgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggcttg 582 |||| ||||||||||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct: 1259 tgaatcctatggctgcaatgtttggcggtattgttggacaggaggttgttaaagcttg 1316
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 87.7 bits (44), Expect = 4e-14 Identities = 164/204 (80%) Strand = Plus / Plus Query: 38 tcctgtgttgatgatgaacggcttgagttccaagatggtgatcttgttgttttctctgag 97 |||||||| || ||||| |||||||||| |||||||||| || ||||||||||| || Sbjct: 869 tcctgtgtcgacgatgagaggcttgagtttgaagatggtgacctagttgttttctcagaa 928 Query: 98 gtccatggtatgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccg 157 || | |||||||||||| |||||||||| |||||||||||| | |||| | || |||| Sbjct: 929 gttgagggtatgacagaattgaatgatgggaaaccaaggaagataaaaagtacacggcca 988 Query: 158 ttttcatttagcatcgaggaggacacaagtaactttggcacttacgtaaaaggtggaatt 217 | |||||| | | | || |||||||| | ||||| ||| || || || || ||||| ||| Sbjct: 989 tattcattcacccttgatgaggacactactaactatggaacatatgtgaagggtggtatt 1048 Query: 218 gtcacacaggtgaaagaaccaaag 241 ||||| || |||||| | |||||| Sbjct: 1049 gtcactcaagtgaaacagccaaag 1072 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 525 tgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggcttg 582 |||| ||||||||||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct: 1356 tgaatcctatggctgcaatgtttggcggtattgttggacaggaggttgttaaagcttg 1413
>dbj|AB124880.1| Nicotiana tabacum mRNA for ubiquitin activating enzyme 2, complete cds Length = 3243 Score = 87.7 bits (44), Expect = 4e-14 Identities = 53/56 (94%) Strand = Plus / Plus Query: 527 aaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggcttg 582 ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 1261 aacccaatggctgctatgtttggtggtattgttgggcaagaagttgtgaaggcttg 1316 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 278 gatcctggagattttcttctgagtgacttctcaaagtttgagcgccc 324 |||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 1012 gatcctggtgactttcttctgagtgacttctctaagtttgaccgccc 1058 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 107 atgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccgttttcattt 166 |||||||||||||||||||| || || || || | |||||||| ||||| | ||||||| Sbjct: 841 atgacagaactgaatgatgggaagcctagaaaaataaaaaatgcgaggccatattcattt 900 Query: 167 a 167 | Sbjct: 901 a 901
>dbj|AB124879.1| Nicotiana tabacum mRNA for ubiquitin activating enzyme 1, complete cds Length = 3243 Score = 87.7 bits (44), Expect = 4e-14 Identities = 53/56 (94%) Strand = Plus / Plus Query: 527 aaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggcttg 582 ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 1261 aacccaatggctgctatgtttggtggtattgttgggcaagaagttgtgaaggcttg 1316 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 278 gatcctggagattttcttctgagtgacttctcaaagtttgagcgccc 324 |||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 1012 gatcctggtgactttcttctgagtgacttctccaagtttgaccgccc 1058 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 107 atgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccgttttcattt 166 |||||||||||||||||||| || || || || | |||||||| ||||| | ||||||| Sbjct: 841 atgacagaactgaatgatgggaagcctagaaaaataaaaaatgcgaggccatattcattt 900 Query: 167 a 167 | Sbjct: 901 a 901
>gb|AY684131.1| Vitis vinifera ubiquitin-activating enzyme mRNA, partial cds Length = 565 Score = 83.8 bits (42), Expect = 6e-13 Identities = 105/126 (83%) Strand = Plus / Plus Query: 107 atgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccgttttcattt 166 ||||||||||| ||||||||||| ||||| ||| | |||||||||||||||| ||| ||| Sbjct: 4 atgacagaactcaatgatggaaagccaagaaagataaaaaatgcaaggccgtattcgttt 63 Query: 167 agcatcgaggaggacacaagtaactttggcacttacgtaaaaggtggaattgtcacacag 226 | | |||||||| || | || ||||| || |||| |||||||| |||||||||||| Sbjct: 64 actcttgaggaggataccacaaattttggtacctacgagaaaggtggtattgtcacacag 123 Query: 227 gtgaaa 232 |||||| Sbjct: 124 gtgaaa 129 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 524 ttgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggc 579 ||||| || |||||||| ||||||||||||||||| || || || ||||||||||| Sbjct: 421 ttgaatcccatggctgctatgtttggtggtattgtaggacaggaggttgtgaaggc 476 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 278 gatcctggagattttcttctgagtgacttctcaaagtttgagcgccc 324 |||||||| |||||||||||||| || ||||| |||||||| ||||| Sbjct: 175 gatcctggtgattttcttctgagcgatttctccaagtttgatcgccc 221
>emb|AJ566485.1|TCA566485 Theobroma cacao microsatellite, clone mTcCIR154 Length = 530 Score = 73.8 bits (37), Expect = 6e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 206 aaaggtggaattgtcacacaggtgaaagaaccaaaggtgctatgtttcaaggcactaaga 265 |||||||| ||||||||||| |||||| | || |||||| | ||||||| || | ||| Sbjct: 521 aaaggtggcattgtcacacaagtgaaacagcccaaggtgttgaatttcaagccattgaga 462 Query: 266 gatgccatgacagatcctggagattttcttctgagtgacttctcaaagtttga 318 || || | | ||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 461 gaagctcttaaagatcctggtgattttcttctgagtgatttctcaaagtttga 409
>ref|NM_120729.2| Arabidopsis thaliana ATUBA2; ubiquitin activating enzyme AT5G06460 (ATUBA2) mRNA, complete cds Length = 3379 Score = 69.9 bits (35), Expect = 9e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 41 tgtgttgatgatgaacggcttgagttccaagatggtgatcttgttgttttctctgaggtc 100 ||||| |||||||| |||| ||||| ||||||| || | |||||||||||||| || Sbjct: 766 tgtgtcgatgatgagaggctcgagtttgaagatggaaatttggttgttttctctgaagtt 825 Query: 101 catggtatgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccgttt 160 | || |||||||| || ||||||||||||||||||||| | ||||||| | ||| ||| Sbjct: 826 gagggaatgacagagctaaatgatggaaaaccaaggaagataaaaaatgtcaagccattt 885 Query: 161 tcattta 167 ||||||| Sbjct: 886 tcattta 892 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 518 gctgttttgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaag 577 |||||| |||| ||||||||||| ||||||||||| |||||||| || || ||||| ||| Sbjct: 1243 gctgttctgaatcctatggctgcaatgtttggtggcattgttgggcaggaggttgtcaag 1302 Query: 578 gc 579 || Sbjct: 1303 gc 1304 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 277 agatcctggagattttcttctgagtgacttctcaaagtttga 318 |||||| || || |||||||| |||||||| ||||||||||| Sbjct: 1002 agatccaggcgactttcttctaagtgacttttcaaagtttga 1043
>gb|AF357838.1|AF357838 Solanum tuberosum ubiquitin activating enzyme mRNA, partial cds Length = 396 Score = 69.9 bits (35), Expect = 9e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 278 gatcctggagattttcttctgagtgacttctcaaagtttgagcgccc 324 |||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 112 gatcctggtgactttcttctgagtgacttctcaaagtttgaccgccc 158
>dbj|AB006700.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15 Length = 83865 Score = 69.9 bits (35), Expect = 9e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 41 tgtgttgatgatgaacggcttgagttccaagatggtgatcttgttgttttctctgaggtc 100 ||||| |||||||| |||| ||||| ||||||| || | |||||||||||||| || Sbjct: 80006 tgtgtcgatgatgagaggctcgagtttgaagatggaaatttggttgttttctctgaagtt 80065 Query: 101 catggtatgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccgttt 160 | || |||||||| || ||||||||||||||||||||| | ||||||| | ||| ||| Sbjct: 80066 gagggaatgacagagctaaatgatggaaaaccaaggaagataaaaaatgtcaagccattt 80125 Query: 161 tcattta 167 ||||||| Sbjct: 80126 tcattta 80132 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 518 gctgttttgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaag 577 |||||| |||| ||||||||||| ||||||||||| |||||||| || || ||||| ||| Sbjct: 80483 gctgttctgaatcctatggctgcaatgtttggtggcattgttgggcaggaggttgtcaag 80542 Query: 578 gc 579 || Sbjct: 80543 gc 80544 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 277 agatcctggagattttcttctgagtgacttctcaaagtttga 318 |||||| || || |||||||| |||||||| ||||||||||| Sbjct: 80242 agatccaggcgactttcttctaagtgacttttcaaagtttga 80283
>gb|U40566.1|ATU40566 Arabidopsis thaliana ubiquitin activating enzyme 2 (UBA2) gene, complete cds Length = 4000 Score = 69.9 bits (35), Expect = 9e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 41 tgtgttgatgatgaacggcttgagttccaagatggtgatcttgttgttttctctgaggtc 100 ||||| |||||||| |||| ||||| ||||||| || | |||||||||||||| || Sbjct: 1179 tgtgtcgatgatgagaggctcgagtttgaagatggaaatttggttgttttctctgaagtt 1238 Query: 101 catggtatgacagaactgaatgatggaaaaccaaggaaggttaaaaatgcaaggccgttt 160 | || |||||||| || ||||||||||||||||||||| | ||||||| | ||| ||| Sbjct: 1239 gagggaatgacagagctaaatgatggaaaaccaaggaagataaaaaatgtcaagccattt 1298 Query: 161 tcattta 167 ||||||| Sbjct: 1299 tcattta 1305 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 518 gctgttttgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaag 577 |||||| |||| ||||||||||| ||||||||||| |||||||| || || ||||| ||| Sbjct: 1656 gctgttctgaatcctatggctgcaatgtttggtggcattgttgggcaggaggttgtcaag 1715 Query: 578 gc 579 || Sbjct: 1716 gc 1717 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 277 agatcctggagattttcttctgagtgacttctcaaagtttga 318 |||||| || || |||||||| |||||||| ||||||||||| Sbjct: 1415 agatccaggcgactttcttctaagtgacttttcaaagtttga 1456
>gb|AY104888.1| Zea mays PCO092158 mRNA sequence Length = 584 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 518 gctgttttgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgt 573 ||||||||||| ||||||||||| |||||||| |||||||| ||||| || ||||| Sbjct: 44 gctgttttgaatcctatggctgcaatgtttggcggtattgtaggtcaggaggttgt 99
>gb|AY623106.1| Pisum sativum ubiquitin activating enzyme E1 mRNA, partial cds Length = 614 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 524 ttgaaccctatggctgcgatgtttggtggtattgttggtcaagaagttgtgaaggc 579 |||||||||||||| || ||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 335 ttgaaccctatggcggccatgtttggtggcattgtaggacaagaggttgttaaggc 390 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 205 aaaaggtggaattgtcacacaggtgaaagaaccaaaggt 243 ||||||||| |||||||||||||| || |||||||||| Sbjct: 16 aaaaggtggtattgtcacacaggtcaagcaaccaaaggt 54
>emb|AL121877.14|HSBB140E4 Human DNA sequence from clone RP13-140E4 on chromosome X Contains a staufen, RNA binding protein homolog 2, (Drosophila) (STAU2) pseudogene and an ubiquitin specific protease 1 (USP1) pseudogene, complete sequence Length = 163253 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 tgctggttgtgagcaggatgc 411 ||||||||||||||||||||| Sbjct: 43901 tgctggttgtgagcaggatgc 43881
>gb|AC078867.11| Homo sapiens 3 BAC RP11-605F14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132701 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 512 tctcgagctgttttgaaccctatgg 536 |||| |||||||||||||||||||| Sbjct: 89625 tctctagctgttttgaaccctatgg 89649
>ref|NM_112805.3| Arabidopsis thaliana unknown protein AT3G19180 transcript variant AT3G19180.1 mRNA, complete cds Length = 2840 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 tgctcaaagttttctgaaga 428 |||||||||||||||||||| Sbjct: 860 tgctcaaagttttctgaaga 879
>ref|NM_001035648.1| Arabidopsis thaliana unknown protein AT3G19180 transcript variant AT3G19180.2 mRNA, complete cds Length = 2972 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 tgctcaaagttttctgaaga 428 |||||||||||||||||||| Sbjct: 860 tgctcaaagttttctgaaga 879
>gb|AC152982.1| Mus musculus 10 BAC RP23-36F22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 214493 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 atttagcatcgaggaggacacaag 186 |||||||||| ||||||||||||| Sbjct: 202270 atttagcatcaaggaggacacaag 202247
>gb|AC124394.4| Mus musculus BAC clone RP24-335M3 from chromosome 19, complete sequence Length = 171122 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ttgctgctgctattaatgaa 448 |||||||||||||||||||| Sbjct: 65248 ttgctgctgctattaatgaa 65267
>gb|AC122798.3| Mus musculus BAC clone RP23-301A3 from 2, complete sequence Length = 206324 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 288 attttcttctgagtgacttctcaaagtt 315 ||||||||||| ||||||| |||||||| Sbjct: 184681 attttcttctgtgtgacttttcaaagtt 184708
>gb|AC115804.7| Mus musculus chromosome 14, clone RP23-411N8, complete sequence Length = 220114 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 agatggtgatcttgttgttt 89 |||||||||||||||||||| Sbjct: 45033 agatggtgatcttgttgttt 45014
>gb|AC101709.11| Mus musculus chromosome 10, clone RP23-271A21, complete sequence Length = 143875 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 atttagcatcgaggaggacacaag 186 |||||||||| ||||||||||||| Sbjct: 35087 atttagcatcaaggaggacacaag 35064
>gb|AY301989.1| Penicillium marneffei G-alpha subunit (gasB) gene, complete cds Length = 4106 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgccctgctgctggttgtga 402 |||||||||||||||||||| Sbjct: 4017 tgccctgctgctggttgtga 3998
>emb|AL031713.8|HS349E11 Human DNA sequence from clone LA16c-349E11 on chromosome 16 Contains the SSTR5 gene for somatostatin receptor 5, a GSS and five putative CpG islands, complete sequence Length = 33002 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tctctgaggtccatggtatg 109 |||||||||||||||||||| Sbjct: 30692 tctctgaggtccatggtatg 30711
>gb|AY074283.1| Arabidopsis thaliana unknown protein (At3g19180) mRNA, complete cds Length = 2857 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 tgctcaaagttttctgaaga 428 |||||||||||||||||||| Sbjct: 860 tgctcaaagttttctgaaga 879
>gb|AC159939.3| Loxodonta africana clone VMRC15-235M14, complete sequence Length = 144550 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 catcagcaatgataaccctg 29 |||||||||||||||||||| Sbjct: 123359 catcagcaatgataaccctg 123340
>gb|AE006466.1| Homo sapiens 16p13.3 sequence section 5 of 8 Length = 265786 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tctctgaggtccatggtatg 109 |||||||||||||||||||| Sbjct: 44989 tctctgaggtccatggtatg 45008
>emb|CR628312.1| Human DNA sequence from clone XX-NCIH2171_8J01, complete sequence Length = 112000 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 499 gtttgcaagtggttctcgagctgt 522 ||||||||||||||||| |||||| Sbjct: 94662 gtttgcaagtggttctcaagctgt 94685
>gb|AC114287.2| Homo sapiens chromosome 5 clone CTD-2350L11, complete sequence Length = 88147 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 277 agatcctggagattttcttctgagtgacttctcaaagttt 316 |||||||| ||||||||||||| || | |||| ||||||| Sbjct: 23127 agatcctgaagattttcttctgtgttatttcttaaagttt 23088
>gb|AC087257.13| Homo sapiens 12 BAC RP11-709A23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170116 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 499 gtttgcaagtggttctcgagctgt 522 ||||||||||||||||| |||||| Sbjct: 71604 gtttgcaagtggttctcaagctgt 71627
>gb|AC068794.25| Homo sapiens 12 BAC RP13-200J3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137043 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 499 gtttgcaagtggttctcgagctgt 522 ||||||||||||||||| |||||| Sbjct: 99549 gtttgcaagtggttctcaagctgt 99572
>gb|AC124290.5| Homo sapiens chromosome 8, clone RP11-89M20, complete sequence Length = 198642 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 atcctggagattttcttctg 298 |||||||||||||||||||| Sbjct: 79182 atcctggagattttcttctg 79163
>gb|AC124073.9| Homo sapiens chromosome 8, clone RP11-593P24, complete sequence Length = 185250 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 atcctggagattttcttctg 298 |||||||||||||||||||| Sbjct: 7275 atcctggagattttcttctg 7294
>dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11 Length = 81875 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 tgctcaaagttttctgaaga 428 |||||||||||||||||||| Sbjct: 29178 tgctcaaagttttctgaaga 29197
>gb|AF124628.2|AF124628 Neisseria animalis strain NCTC 10212 23S ribosomal RNA gene, partial sequence Length = 204 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 aaactattccaacagtttgc 504 |||||||||||||||||||| Sbjct: 65 aaactattccaacagtttgc 46
>gb|AF124626.1|AF124626 Kingella kingae strain DSM 7536 23S ribosomal RNA gene, partial sequence Length = 204 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 aaactattccaacagtttgc 504 |||||||||||||||||||| Sbjct: 65 aaactattccaacagtttgc 46
>gb|AF124619.1|AF124619 Eikenella corrodens strain DSM 8340 23S ribosomal RNA gene, partial sequence Length = 204 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 aaactattccaacagtttgc 504 |||||||||||||||||||| Sbjct: 65 aaactattccaacagtttgc 46
>dbj|AP006252.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-771I6, complete sequence Length = 153493 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 atcctggagattttcttctg 298 |||||||||||||||||||| Sbjct: 119461 atcctggagattttcttctg 119480
>dbj|AP006244.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-108H17, complete sequence Length = 169401 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 atcctggagattttcttctg 298 |||||||||||||||||||| Sbjct: 19650 atcctggagattttcttctg 19669
>gb|AC102480.8| Mus musculus chromosome 3, clone RP24-423L4, complete sequence Length = 189940 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tggagattttcttctgagtg 302 |||||||||||||||||||| Sbjct: 165917 tggagattttcttctgagtg 165936
>emb|CT571243.9| Mouse DNA sequence from clone RP23-122I21 on chromosome 9, complete sequence Length = 158763 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 gaggtccatggtatgacaga 114 |||||||||||||||||||| Sbjct: 101950 gaggtccatggtatgacaga 101931
>gb|AC171204.1| Mus musculus BAC clone RP23-312J21 from chromosome 9, complete sequence Length = 223399 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 gaggtccatggtatgacaga 114 |||||||||||||||||||| Sbjct: 146783 gaggtccatggtatgacaga 146764
>emb|AL844577.3| Mouse DNA sequence from clone RP23-129P1 on chromosome 2, complete sequence Length = 204516 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 288 attttcttctgagtgacttctcaaagtt 315 ||||||||||| ||||||| |||||||| Sbjct: 97583 attttcttctgtgtgacttttcaaagtt 97556
>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete sequence Length = 188892 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ccaagatggtgatcttgttg 86 |||||||||||||||||||| Sbjct: 106180 ccaagatggtgatcttgttg 106161
>dbj|AP000082.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 18/19 Length = 100000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 atcctggagattttcttctg 298 |||||||||||||||||||| Sbjct: 31614 atcctggagattttcttctg 31595 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,253,411 Number of Sequences: 3902068 Number of extensions: 6253411 Number of successful extensions: 113524 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113200 Number of HSP's gapped (non-prelim): 315 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
