ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62m21 |
|---|---|
| Clone Library Name | barley_pub |
>UBP14_ARATH (Q8L6Y1) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) Length = 797 Score = 264 bits (674), Expect = 2e-70 Identities = 133/217 (61%), Positives = 164/217 (75%), Gaps = 1/217 (0%) Frame = +1 Query: 7 PELNPCTGFKFIIEERVQCPSGKVSYNQHCDNFLTLSIPLHEATNKEQLEVFHEKKAAMD 186 P+L+P FKF IEE++ CPSGKV YN+ D L+L+IPLHEATNK++LE FH++KA Sbjct: 435 PDLDPSRSFKFGIEEKILCPSGKVGYNKREDCILSLNIPLHEATNKDELEAFHKQKAGKG 494 Query: 187 LDGKEL-SKEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLV 363 L+ ++ S +EIVRPRVPLEACLA+F+ E + ++YS+AL TTAIKTTGL +FPDYLV Sbjct: 495 LEENDMRSSDEIVRPRVPLEACLANFASSEPIEDYYSSALKGMTTAIKTTGLTSFPDYLV 554 Query: 364 LQMRKFVMGAGWVPKKLXXXXXXXXXXXXSHMRSHGVQPGEELLPEGASCGNKAESARPV 543 L MRKFVM GWVPKKL SHMRS G+QPGEELLP+G ESA+PV Sbjct: 555 LHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQPGEELLPDGVP-EEVMESAQPV 613 Query: 544 ADEDIVSQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 A+E+IV+QL +MGF+ CQKAAINTSNAG+EEAMNW Sbjct: 614 ANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNW 650
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 165 bits (418), Expect = 1e-40 Identities = 91/238 (38%), Positives = 133/238 (55%), Gaps = 25/238 (10%) Frame = +1 Query: 16 NPCTGFKFIIEERVQC-PSGKVSYNQHCDNFLTLSIPLHEATNKEQLEVFHEKKAAMDLD 192 NP F+F++EE+++C + KV Y Q D + L +P+ A NKE+L + EKK + Sbjct: 456 NPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKR--QAE 513 Query: 193 GKELSKEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQM 372 ++++ E+VR +VP +CL ++ E+V +F+STAL +K+ A+KTT +FPDYLV+Q+ Sbjct: 514 EEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQI 573 Query: 373 RKFVMGAGWVPKKLXXXXXXXXXXXXSHMRSHGVQPGEELLPEGAS-------------- 510 +KF G WVPKKL S +R G+QPGEE LP+ A Sbjct: 574 KKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGF 633 Query: 511 CGNKAESA----------RPVADEDIVSQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 GN+ E + P+ DE ++ QL MGF AC+KA T N+G E AMNW Sbjct: 634 YGNEDEDSFCSPHFSSPTSPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNW 691 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +1 Query: 490 LLPEGASCGNKAESARPVADEDIVSQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 +LP + G+ + +A P ED V+ + +MGF+ K A+ +N LE A++W Sbjct: 706 ILPGSSGPGSTSAAADP-PPEDCVTTIVSMGFSRDQALK-ALRATNNSLERAVDW 758
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 164 bits (415), Expect = 2e-40 Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 25/238 (10%) Frame = +1 Query: 16 NPCTGFKFIIEERVQC-PSGKVSYNQHCDNFLTLSIPLHEATNKEQLEVFHEKKAAMDLD 192 NP F+F++EE+++C + KV Y Q D + L +P+ A NKE+L + EKK + Sbjct: 456 NPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKR--QAE 513 Query: 193 GKELSKEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQM 372 +++ E+VR +VP +CL ++ E+V +F+STAL +K+ A+KTT +FPDYLV+Q+ Sbjct: 514 EEKVPLPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQI 573 Query: 373 RKFVMGAGWVPKKLXXXXXXXXXXXXSHMRSHGVQPGEELLPEGAS-------------- 510 +KF G WVPKKL S +R G+QPGEE LP+ A Sbjct: 574 KKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGF 633 Query: 511 CGNKAESA----------RPVADEDIVSQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 GN+ E + P+ DE ++ QL MGF AC+KA T N+G E AMNW Sbjct: 634 YGNEDEDSFCSPHFSSPTSPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNW 691 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +1 Query: 490 LLPEGASCGNKAESARPVADEDIVSQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 +LP + G+ + +A P ED V+ + +MGF+ K A+ +N LE A++W Sbjct: 706 ILPGSSGPGSTSAAADP-PPEDCVTTIVSMGFSRDQALK-ALRATNNSLERAVDW 758
>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) Length = 863 Score = 149 bits (377), Expect = 5e-36 Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 11/224 (4%) Frame = +1 Query: 16 NPCTGFKFIIEERVQC-PSGKVSYNQHCDNFLTLSIPLHEATNKEQLEVFHEKKAAMDLD 192 NP F+F++EER+QC + KV Y + D + L + + ATNK++L + + + + Sbjct: 468 NPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEAN 527 Query: 193 GKELSKEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQM 372 + L E+VR ++P ACL +FS E V +F+S+AL +K+ +KT+ +FP+YLV+Q+ Sbjct: 528 RRPLP--ELVRAKIPFSACLQAFSEPENVDDFWSSALQAKSAGVKTSRFASFPEYLVVQI 585 Query: 373 RKFVMGAGWVPKKLXXXXXXXXXXXXSHMRSHGVQPGEELLPEGASCGNKAESAR----- 537 +KF G WVPKK +H+R+ G+QPGEE LP+ + + ++ Sbjct: 586 KKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQPGEEELPDISPPIVIPDDSKDRLMN 645 Query: 538 -----PVADEDIVSQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 DE V QLA MGF AC+KA T N G E A NW Sbjct: 646 QLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNW 689
>UBPA_DICDI (P54201) Ubiquitin carboxyl-terminal hydrolase A (EC 3.1.2.15)| (Ubiquitin thioesterase A) (Ubiquitin-specific-processing protease A) (Deubiquitinating enzyme A) Length = 837 Score = 114 bits (286), Expect = 2e-25 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 1/216 (0%) Frame = +1 Query: 10 ELNPCTGFKFIIEERVQC-PSGKVSYNQHCDNFLTLSIPLHEATNKEQLEVFHEKKAAMD 186 + NP F+F E+R++C SG+V Y + +N L++ + L +ATNK+++ + E Sbjct: 453 QANPTRLFQFHNEDRIECGSSGQVKYTRRLENILSVPVNLDDATNKQEVAQYEE--TLKQ 510 Query: 187 LDGKELSKEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVL 366 +G +E +RP +PL +C+ F V +F S A KT ++ ++ + TFP+ L++ Sbjct: 511 QNGVRQKDQEEIRPIIPLVSCINGFVEPYRVEDFLSPATGVKTFSLNSSRMATFPEVLII 570 Query: 367 QMRKFVMGAGWVPKKLXXXXXXXXXXXXSHMRSHGVQPGEELLPEGASCGNKAESARPVA 546 ++K+ A + PKKL +R G++ GE L EG + + P Sbjct: 571 HLKKYTYNADYTPKKLNVFMDVPDIIDIDSLRGRGIKEGEVPLKEG-TINTTTKVPEPSF 629 Query: 547 DEDIVSQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 +++++ L +M F C+KA + T E AMNW Sbjct: 630 NQEVLDTLLSMDFPLVRCKKALLATGGKDAELAMNW 665
>UBP14_SCHPO (Q11119) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (UBA-domain-containing protein 2) Length = 775 Score = 60.1 bits (144), Expect = 6e-09 Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 3/211 (1%) Frame = +1 Query: 31 FKFIIEERVQCPSGK-VSYNQHCDNFLTLSIPLHEATNKEQLEVFHEKKAAMDLDGKELS 207 F F E+++ C S K V Y+ LTL++P + +++G+++ Sbjct: 434 FDFETEQKLSCLSCKRVRYSSFSSQGLTLTVP---------------RVKIGEIEGEQIY 478 Query: 208 KEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQMRKFVM 387 +E V ++ CL + +++ E+ A SK A TT +K+FP L+LQ +F + Sbjct: 479 EE------VSIDQCLDATIQPDQM-EYTCEACKSKLGATTTTAMKSFPKVLILQANRFDL 531 Query: 388 GAGWVPKKLXXXXXXXXXXXXSHMR--SHGVQPGEELLPEGASCGNKAESARPVADEDIV 561 G+ KKL + R + E+ LPE +SA + Sbjct: 532 -QGYQVKKLSIPIIVNEDGIYNFDRLMAKDHPNDEDYLPEKTETIEWNQSA--------I 582 Query: 562 SQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 QL MGF CQ+A + T N+ E AMNW Sbjct: 583 EQLQAMGFPLVRCQRALLATGNSDTETAMNW 613
>UBP14_YEAST (P38237) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (Glucose-induced degradation protein 6) Length = 803 Score = 54.3 bits (129), Expect = 3e-07 Identities = 63/221 (28%), Positives = 84/221 (38%), Gaps = 8/221 (3%) Frame = +1 Query: 16 NPCTGFKFIIEERVQCP-SGKVSYNQHCDNFLTLSIPLHEATNKEQLEVFHEKKAAMDLD 192 NP +F++E+R+QC GKV Y+ +E T Q+ + Sbjct: 462 NPNDLVRFMMEDRLQCNICGKVKYS-------------YEPTEAIQIPL----------- 497 Query: 193 GKELSKEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQM 372 EE P+ LE A F G + EF K TA K G K+ P L+L Sbjct: 498 ------EENDEPQDMLERIKAYFEG--QTIEFKCANCKEKVTANKKPGFKSLPQTLILNP 549 Query: 373 RKFVMGAGWVPKK------LXXXXXXXXXXXXSHMRSHGVQPG-EELLPEGASCGNKAES 531 + + W+P K L S S G P E LLP+ S Sbjct: 550 IRIRL-QNWIPVKTSNELSLPGLIDRDDMLDVSSYLSQGFDPQTENLLPDE---DENRSS 605 Query: 532 ARPVADEDIVSQLANMGFNYFACQKAAINTSNAGLEEAMNW 654 P ++ +SQL MGF A +A NT N E AMNW Sbjct: 606 FTP--NQCSISQLIEMGFTQNASVRALFNTGNQDAESAMNW 644
>UBP8_YEAST (P50102) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)| (Ubiquitin thioesterase 8) (Ubiquitin-specific processing protease 8) (Deubiquitinating enzyme 8) Length = 471 Score = 34.7 bits (78), Expect = 0.25 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Frame = +1 Query: 220 VRPRVPLEACLASFSGGEEVPEF--YSTALNSKTTAIKTTGLKTFPDYLVLQMRKF 381 ++ + L CL SF E++ +F + NS AIK G+ P LVLQ+++F Sbjct: 310 IKDKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRF 365
>SNUT2_MOUSE (Q3TIX9) U4/U6.U5 tri-snRNP-associated protein 2 (Inactive| ubiquitin-specific peptidase 39) Length = 564 Score = 31.6 bits (70), Expect = 2.2 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 208 KEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQMRKFVM 387 KE+++ P+VPL LA F+G E + Y T K +K L P YL+ +++F Sbjct: 404 KEQLIIPQVPLFNILAKFNGITE--KEYKT---YKENFLKRFQLTKLPPYLIFCIKRFTK 458 Query: 388 GAGWVPK 408 +V K Sbjct: 459 NNFFVEK 465
>SNUT2_PONPY (Q5R761) U4/U6.U5 tri-snRNP-associated protein 2 (Inactive| ubiquitin-specific peptidase 39) Length = 565 Score = 31.6 bits (70), Expect = 2.2 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 208 KEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQMRKFVM 387 KE+++ P+VPL LA F+G E + Y T K +K L P YL+ +++F Sbjct: 405 KEQLIIPQVPLFNILAKFNGITE--KEYKT---YKENFLKRFQLTKLPPYLIFCIKRFTK 459 Query: 388 GAGWVPK 408 +V K Sbjct: 460 NNFFVEK 466
>SNUT2_HUMAN (Q53GS9) U4/U6.U5 tri-snRNP-associated protein 2 (U4/U6.U5| tri-snRNP-associated 65 kDa protein) (65K) (Inactive ubiquitin-specific peptidase 39) (SAD1 homolog) Length = 565 Score = 31.6 bits (70), Expect = 2.2 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 208 KEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQMRKFVM 387 KE+++ P+VPL LA F+G E + Y T K +K L P YL+ +++F Sbjct: 405 KEQLIIPQVPLFNILAKFNGITE--KEYKT---YKENFLKRFQLTKLPPYLIFCIKRFTK 459 Query: 388 GAGWVPK 408 +V K Sbjct: 460 NNFFVEK 466
>RPIA_BLOFL (Q7VRG1) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 222 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%) Frame = +1 Query: 70 GKVSYNQHCDNFLT-LSIPLHEATNKEQLEVFHEKKAAMDL-------DGKELSKEEIV 222 G VS +QH N L L IPL+ N LE++ + +DL G L+KE+I+ Sbjct: 49 GVVSSSQHSSNQLKKLGIPLYNLNNLNDLEIYIDSADEIDLHMQMIKGGGGALTKEKII 107
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 30.8 bits (68), Expect = 3.7 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 525 GICSSCCRRGYCIPACKHGVQLLCLSESC 611 G SSCCR+ C PAC C S SC Sbjct: 121 GAASSCCRQSSCQPAC-------CASSSC 142
>GLMU_NEIMA (Q9JWN3) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 456 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/67 (34%), Positives = 32/67 (47%) Frame = +1 Query: 196 KELSKEEIVRPRVPLEACLASFSGGEEVPEFYSTALNSKTTAIKTTGLKTFPDYLVLQMR 375 KE++ +V P LEA L S S E+Y T L +K A G+K P +Q+R Sbjct: 165 KEINTGILVLPNAKLEAWLNSLSSNNAQGEYYLTDLIAKAVA---DGIKIHP----VQVR 217 Query: 376 KFVMGAG 396 + AG Sbjct: 218 SSHLAAG 224
>DNAA_TREDE (O87546) Chromosomal replication initiator protein dnaA| Length = 469 Score = 29.6 bits (65), Expect = 8.2 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%) Frame = +1 Query: 82 YNQHCDNFLTLSIP--------LHEATNKEQLEVFHEKKAAMDLDGKELSKEEIVRPRVP 237 Y + +N + LS+P +H N + ++F +L GK++S + I++P Sbjct: 35 YEKSTENTVYLSVPSKFFRDQMIHNYKNGIEKKLF-------ELSGKKISIDFIIKPNTS 87 Query: 238 LEACLASFSGGEEVPEFYS--TALNSKTTAIKTTG 336 + A GG + E + ++ SK ++KT G Sbjct: 88 EDLSKAENEGGNDKKEDAAKPSSAESKKKSVKTEG 122
>KR10C_HUMAN (P60413) Keratin-associated protein 10-12 (Keratin-associated| protein 10.12) (High sulfur keratin-associated protein 10.12) (Keratin-associated protein 18-12) (Keratin-associated protein 18.12) Length = 245 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = +3 Query: 516 QQSGICSSCCRRGYCIPACKHGVQLLCLSESC 611 QQS CC+ C+P C L C SC Sbjct: 148 QQSCCVPVCCKPICCVPVCSGASSLCCQQSSC 179 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,742,560 Number of Sequences: 219361 Number of extensions: 1890887 Number of successful extensions: 5394 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5021 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5350 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
