ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62m19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPR1_YEAST (Q12361) G protein-coupled receptor GPR1 32 1.6
2IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2 30 5.9
3LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 30 7.7
4IF2_VIBCH (Q9KU80) Translation initiation factor IF-2 30 7.7

>GPR1_YEAST (Q12361) G protein-coupled receptor GPR1|
          Length = 961

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 250 WLWDNRFSGGLLRGLSPKQRYYWCTSLLLPA 158
           W W N+ SG +  GL  K+ Y W  + L+PA
Sbjct: 160 WKWRNKRSGNMEGGLYKKRSYIWPITALVPA 190



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>IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2|
          Length = 892

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = +2

Query: 197 FGRKTAKKTTRETVVPEPDYRLPIAILGISGVFAYADNXXXXXXXXXXXXXXXFQTTRVR 376
           +GR  A +      V E    +P+ ILG+SGV A  D                ++  + R
Sbjct: 605 YGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFR 664

Query: 377 FVFDDDALEVKVGNQLQESGENVFV 451
                   EVK+  Q +   EN+FV
Sbjct: 665 --------EVKLARQQKSKLENMFV 681



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>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog|
          Length = 1259

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 WSTANLPCKGHFAGMRRRSRKQQRS 178
           W TA   C+G F  +    RKQ+RS
Sbjct: 287 WDTAKAVCRGKFIALNAHKRKQERS 311



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>IF2_VIBCH (Q9KU80) Translation initiation factor IF-2|
          Length = 898

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 22/84 (26%), Positives = 33/84 (39%)
 Frame = +2

Query: 197 FGRKTAKKTTRETVVPEPDYRLPIAILGISGVFAYADNXXXXXXXXXXXXXXXFQTTRVR 376
           +GR  A +      V E    +P+ ILG+SGV A  D                ++  + R
Sbjct: 611 YGRVRAMRDEVGNEVEEAGPSIPVEILGLSGVPAAGDEATVVRDERKAREVANYRAGKFR 670

Query: 377 FVFDDDALEVKVGNQLQESGENVF 448
                   EVK+  Q +   EN+F
Sbjct: 671 --------EVKLARQQKSKLENMF 686


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,932,818
Number of Sequences: 219361
Number of extensions: 2009663
Number of successful extensions: 5687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5685
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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