Clone Name | bah62m19 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | GPR1_YEAST (Q12361) G protein-coupled receptor GPR1 | 32 | 1.6 | 2 | IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2 | 30 | 5.9 | 3 | LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog | 30 | 7.7 | 4 | IF2_VIBCH (Q9KU80) Translation initiation factor IF-2 | 30 | 7.7 |
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>GPR1_YEAST (Q12361) G protein-coupled receptor GPR1| Length = 961 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -3 Query: 250 WLWDNRFSGGLLRGLSPKQRYYWCTSLLLPA 158 W W N+ SG + GL K+ Y W + L+PA Sbjct: 160 WKWRNKRSGNMEGGLYKKRSYIWPITALVPA 190
>IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2| Length = 892 Score = 30.0 bits (66), Expect = 5.9 Identities = 23/85 (27%), Positives = 34/85 (40%) Frame = +2 Query: 197 FGRKTAKKTTRETVVPEPDYRLPIAILGISGVFAYADNXXXXXXXXXXXXXXXFQTTRVR 376 +GR A + V E +P+ ILG+SGV A D ++ + R Sbjct: 605 YGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFR 664 Query: 377 FVFDDDALEVKVGNQLQESGENVFV 451 EVK+ Q + EN+FV Sbjct: 665 --------EVKLARQQKSKLENMFV 681
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog| Length = 1259 Score = 29.6 bits (65), Expect = 7.7 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 104 WSTANLPCKGHFAGMRRRSRKQQRS 178 W TA C+G F + RKQ+RS Sbjct: 287 WDTAKAVCRGKFIALNAHKRKQERS 311
>IF2_VIBCH (Q9KU80) Translation initiation factor IF-2| Length = 898 Score = 29.6 bits (65), Expect = 7.7 Identities = 22/84 (26%), Positives = 33/84 (39%) Frame = +2 Query: 197 FGRKTAKKTTRETVVPEPDYRLPIAILGISGVFAYADNXXXXXXXXXXXXXXXFQTTRVR 376 +GR A + V E +P+ ILG+SGV A D ++ + R Sbjct: 611 YGRVRAMRDEVGNEVEEAGPSIPVEILGLSGVPAAGDEATVVRDERKAREVANYRAGKFR 670 Query: 377 FVFDDDALEVKVGNQLQESGENVF 448 EVK+ Q + EN+F Sbjct: 671 --------EVKLARQQKSKLENMF 686 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,932,818 Number of Sequences: 219361 Number of extensions: 2009663 Number of successful extensions: 5687 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 5487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5685 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)