>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 92.0 bits (227), Expect = 4e-19
 Identities = 46/49 (93%), Positives = 46/49 (93%)
 Frame = +2

Query: 11  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAXNYHGKSSKANRFXXMAA 157
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSA NYHGKSSKANRF  MAA
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAA 49

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 43/48 (89%), Positives = 43/48 (89%)
 Frame = +2

Query: 11  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAXNYHGKSSKANRFXXMA 154
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSA NYHGKSS  NRF  MA
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMA 48

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 39/53 (73%), Positives = 43/53 (81%), Gaps = 4/53 (7%)
 Frame = +2

Query: 11  MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAXNYHGKSSKAN-RFXXMAA 157
           MAAAFSSTVGAPASTPT  +FLGKKL K QV++A  YHGKSS +N RF  MAA
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAA 53

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +2

Query: 11  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAXNYHGKSSKANRFXXMAA 157
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   + A
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMA 43

>CMC1_YEAST (P48233) Calcium-binding mitochondrial carrier SAL1 (Suppressor of|
           AAC2 lethality)
          Length = 545

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  AFSSTVGAPASTPTNFLGKKLKKQVTSAXNY 112
           AFS TVGA    P N L  +L+ Q T A  Y
Sbjct: 462 AFSGTVGASVVYPINLLRTRLQAQGTYAHPY 492


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,115,031
Number of Sequences: 219361
Number of extensions: 204198
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)