ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63b15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 297 5e-78
2gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 274 7e-71
3gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 210 9e-52
4gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 208 4e-51
5gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 204 6e-50
6gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 167 1e-38
7dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 167 1e-38
8dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 1e-38
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 1e-38
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 1e-38
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 1e-38
12dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 167 1e-38
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 159 3e-36
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 113 2e-22
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 113 2e-22
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 113 2e-22
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 113 2e-22
18gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 86 4e-14
19gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 86 4e-14
20gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c... 78 9e-12
21gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 58 8e-06
22gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 44 0.12
23emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA 42 0.49
24emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA 42 0.49
25emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA 42 0.49
26emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA 42 0.49
27emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA 42 0.49
28gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ... 40 1.9
29ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot... 40 1.9
30ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop... 40 1.9
31gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 1.9
32gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro... 40 1.9
33ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h... 40 1.9
34gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite... 40 1.9
35gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite... 40 1.9
36ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 1.9
37gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro... 40 1.9
38emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch... 40 1.9
39gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co... 40 1.9
40emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ... 40 1.9
41dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023... 40 1.9
42gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4... 40 1.9
43gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com... 40 1.9
44gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.... 40 1.9
45gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple... 40 1.9
46gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc... 40 1.9
47dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds 40 1.9
48gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 40 1.9
49emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein... 40 1.9
50gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 7.7
51gb|AC113113.18| Mus musculus chromosome 16, clone RP23-334P10, c... 38 7.7
52ref|XM_571100.1| Cryptococcus neoformans var. neoformans JEC21 f... 38 7.7
53gb|AC098721.3| Mus musculus BAC clone RP23-2O23 from 2, complete... 38 7.7
54ref|XM_793274.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 7.7
55emb|AL441992.17| Human DNA sequence from clone RP11-545E17 on ch... 38 7.7
56emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in... 38 7.7
57gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, comp... 38 7.7
58emb|CR606096.1| full-length cDNA clone CS0DK012YE05 of HeLa cell... 38 7.7
59gb|AF381614.1|AF381614 Magnaporthe grisea clone BAC 14F6 gene se... 38 7.7
60emb|BX936296.17| Mouse DNA sequence from clone RP23-27J1 on chro... 38 7.7
61gb|AC018682.4| Homo sapiens BAC clone RP11-417F21 from 2, comple... 38 7.7
62gb|AC084073.22| Mus musculus strain C57BL/6J chromosome 1 clone ... 38 7.7
63gb|AF263282.1|AF263282 Filobasidiella neoformans var. neoformans... 38 7.7
64dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 7.7
65emb|AJ323602.1|HSA323602 Homo sapiens genomic sequence surroundi... 38 7.7
66emb|CT027588.10| Mouse DNA sequence from clone RP23-461P14 on ch... 38 7.7
67dbj|AP003464.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 7.7 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  297 bits (150), Expect = 5e-78
 Identities = 156/159 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcacagagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cagcacagagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgac 191

                                                                       
Query: 61  caacttcctcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192 caacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaa 251

                                                  
Query: 121 gagctccaaggccaacaggttcanantcatggcagcgga 159
           ||||||||||||||||||||||| | |||||||||||||
Sbjct: 252 gagctccaaggccaacaggttcacagtcatggcagcgga 290
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  274 bits (138), Expect = 7e-71
 Identities = 153/159 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcacagagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgac 60
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 52  cagcacagagatggctgctgccttctcctccaccgtcggtgccccggcttctacgccgac 111

                                                                       
Query: 61  caacttcctcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112 caacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaa 171

                                                  
Query: 121 gagctccaaggccaacaggttcanantcatggcagcgga 159
           |||||||||||||||||||||||   |||||||||||||
Sbjct: 172 gagctccaaggccaacaggttcacggtcatggcagcgga 210
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  210 bits (106), Expect = 9e-52
 Identities = 129/137 (94%)
 Strand = Plus / Plus

                                                                       
Query: 7   agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 66
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 67  cctcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctc 126
           |||||| || |||||||||||||||||||||||||| | |||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                            
Query: 127 caaggccaacaggttca 143
           |||||||||||||||||
Sbjct: 196 caaggccaacaggttca 212
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  208 bits (105), Expect = 4e-51
 Identities = 111/114 (97%)
 Strand = Plus / Plus

                                                                        
Query: 46   ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgn 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                  
Query: 106  gaactaccatggcaagagctccaaggccaacaggttcanantcatggcagcgga 159
            |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcgga 5631



 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                           
Query: 1    cagcacagagatggctgctgccttctcctccaccgtcggggctccgg 47
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 cagcacagagatggctgctgccttctcctccaccgtcggggctccgg 5398
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  204 bits (103), Expect = 6e-50
 Identities = 128/137 (93%)
 Strand = Plus / Plus

                                                                       
Query: 7   agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 66
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 67  cctcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctc 126
           |||||| || |||||||||||||||||||||||||| | |||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                            
Query: 127 caaggccaacaggttca 143
           |||||||||||||||||
Sbjct: 186 caaggccaacaggttca 202
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  167 bits (84), Expect = 1e-38
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

                          
Query: 129 aggccaacaggttca 143
           |   |||||||||||
Sbjct: 153 acatcaacaggttca 167
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  167 bits (84), Expect = 1e-38
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

                          
Query: 129 aggccaacaggttca 143
           |   |||||||||||
Sbjct: 145 acatcaacaggttca 159
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  167 bits (84), Expect = 1e-38
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

                          
Query: 129 aggccaacaggttca 143
           |   |||||||||||
Sbjct: 193 acatcaacaggttca 207
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  167 bits (84), Expect = 1e-38
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 129 aggccaacaggttca 143
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  167 bits (84), Expect = 1e-38
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

                          
Query: 129 aggccaacaggttca 143
           |   |||||||||||
Sbjct: 182 acatcaacaggttca 196
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  167 bits (84), Expect = 1e-38
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 129 aggccaacaggttca 143
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  167 bits (84), Expect = 1e-38
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctcca 128
           | ||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

                          
Query: 129 aggccaacaggttca 143
           |   |||||||||||
Sbjct: 180 acatcaacaggttca 194
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  159 bits (80), Expect = 3e-36
 Identities = 121/135 (89%)
 Strand = Plus / Plus

                                                                       
Query: 9   agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 68
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 69  tcgggaagaagctcaagaagcaggtgacctcggccgngaactaccatggcaagagctcca 128
           | ||||||||||| || ||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

                          
Query: 129 aggccaacaggttca 143
           |   |||||||||||
Sbjct: 186 acatcaacaggttca 200
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  113 bits (57), Expect = 2e-22
 Identities = 80/88 (90%)
 Strand = Plus / Minus

                                                                          
Query: 56     ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgngaactaccat 115
              |||||||||||||| ||||||||||| |||||||||||||| ||||| | ||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 116    ggcaagagctccaaggccaacaggttca 143
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 9      agatggctgctgccttctcctccaccgtcggggctccgg 47
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  113 bits (57), Expect = 2e-22
 Identities = 80/88 (90%)
 Strand = Plus / Minus

                                                                         
Query: 56    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgngaactaccat 115
             |||||||||||||| ||||||||||| |||||||||||||| ||||| | ||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 116   ggcaagagctccaaggccaacaggttca 143
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 9     agatggctgctgccttctcctccaccgtcggggctccgg 47
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  113 bits (57), Expect = 2e-22
 Identities = 80/88 (90%)
 Strand = Plus / Minus

                                                                            
Query: 56       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgngaactaccat 115
                |||||||||||||| ||||||||||| |||||||||||||| ||||| | ||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 116      ggcaagagctccaaggccaacaggttca 143
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 9        agatggctgctgccttctcctccaccgtcggggctccgg 47
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  113 bits (57), Expect = 2e-22
 Identities = 80/88 (90%)
 Strand = Plus / Minus

                                                                            
Query: 56       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgngaactaccat 115
                |||||||||||||| ||||||||||| |||||||||||||| ||||| | ||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 116      ggcaagagctccaaggccaacaggttca 143
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 9        agatggctgctgccttctcctccaccgtcggggctccgg 47
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
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>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 106/127 (83%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 11  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 64
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 65  ttcctcgggaagaagctcaagaagc---aggtgacctcggccgngaactaccatggcaag 121
           |||||||||||||||||||| ||||   ||||| || |||||| || |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 122 agctcca 128
           |||||||
Sbjct: 141 agctcca 147
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>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 106/127 (83%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 11  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 64
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 65  ttcctcgggaagaagctcaagaagc---aggtgacctcggccgngaactaccatggcaag 121
           |||||||||||||||||||| ||||   ||||| || |||||| || |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 122 agctcca 128
           |||||||
Sbjct: 141 agctcca 147
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>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 10  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 69
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 70  cgggaagaagctcaagaagcagg 92
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 125 tccaaggccaacaggttcanantcatggcagcgga 159
           ||||||||||||||||||| | |||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcgga 35
to top
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 73     gaagaagctcaagaagcaggtg 94
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
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>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511
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>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521
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>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575
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>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912
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>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cagcacagagatggctgctgc 21
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589
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>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
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>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 117  gcaagagctccaaggccaac 136
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290
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>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747
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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ctgccttctcctccaccgtc 37
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842
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>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703
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>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   ctgctgccttctcctccacc 34
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989
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>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 15 ctgctgccttctcctccacc 34
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46
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>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 15 ctgctgccttctcctccacc 34
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46
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>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   gaagaagctcaagaagcagg 92
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404
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>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213
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>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     tggctgctgccttctcctcc 31
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035
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>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
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>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698
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>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551
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>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      acagagatggctgctgcctt 24
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143
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>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 117  gcaagagctccaaggccaac 136
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290
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>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
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>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aagaagctcaagaagcaggt 93
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650
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>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tggctgctgccttctcctcc 31
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919
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>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689
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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 8      gagatggctgctgccttctcctcc 31
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822
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>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  tggctgctgccttctcctcc 31
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747
to top
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
               sequence
          Length = 1507550

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 75      agaagctcaagaagcaggt 93
               |||||||||||||||||||
Sbjct: 1228188 agaagctcaagaagcaggt 1228206
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>gb|AC113113.18| Mus musculus chromosome 16, clone RP23-334P10, complete sequence
          Length = 216380

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    gggaagaagctcaagaagc 89
             |||||||||||||||||||
Sbjct: 81694 gggaagaagctcaagaagc 81712
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>ref|XM_571100.1| Cryptococcus neoformans var. neoformans JEC21 fatty-acid synthase
            complex protein (CNE04370) partial mRNA
          Length = 7692

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 75   agaagctcaagaagcaggt 93
            |||||||||||||||||||
Sbjct: 6728 agaagctcaagaagcaggt 6746
to top
>gb|AC098721.3| Mus musculus BAC clone RP23-2O23 from 2, complete sequence
          Length = 219368

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      acagagatggctgctgcct 23
              |||||||||||||||||||
Sbjct: 120116 acagagatggctgctgcct 120098
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>ref|XM_793274.1| PREDICTED: Strongylocentrotus purpuratus similar to WD repeat domain
            75 (LOC593812), mRNA
          Length = 2157

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   ggctgctgccttctcctcc 31
            |||||||||||||||||||
Sbjct: 1119 ggctgctgccttctcctcc 1137
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>emb|AL441992.17| Human DNA sequence from clone RP11-545E17 on chromosome 9 Contains the
              gene for protein kinase PKNbeta (pknbeta),  a novel gene,
              the ZDHHC12 gene for zinc finger, DHHC domain containing 12
              (ZNF400, FLJ14524), the gene for ZYG homolog, a novel gene
              (FLJ10743), the ENDOG gene for endonuclease G, a novel gene
              (HSPC109), the 3' end of the CCBL1 gene for cysteine
              conjugate-beta lyase; cytoplasmic (glutamine  transaminase
              K, kyneurenine aminotransferase) and six CpG islands,
              complete sequence
          Length = 166664

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      gcacagagatggctgctgc 21
              |||||||||||||||||||
Sbjct: 148084 gcacagagatggctgctgc 148102
to top
>emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in linkage group 9,
              complete sequence
          Length = 173526

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 72     ggaagaagctcaagaagca 90
              |||||||||||||||||||
Sbjct: 152506 ggaagaagctcaagaagca 152488
to top
>gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, complete sequence
          Length = 85927

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     agatggctgctgccttctc 27
             |||||||||||||||||||
Sbjct: 19863 agatggctgctgccttctc 19881
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>emb|CR606096.1| full-length cDNA clone CS0DK012YE05 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1934

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 3   gcacagagatggctgctgc 21
           |||||||||||||||||||
Sbjct: 145 gcacagagatggctgctgc 127
to top
>gb|AF381614.1|AF381614 Magnaporthe grisea clone BAC 14F6 gene sequence
          Length = 110467

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     acagagatggctgctgcct 23
             |||||||||||||||||||
Sbjct: 95060 acagagatggctgctgcct 95078
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>emb|BX936296.17| Mouse DNA sequence from clone RP23-27J1 on chromosome 2, complete
             sequence
          Length = 188273

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     acagagatggctgctgcct 23
             |||||||||||||||||||
Sbjct: 81751 acagagatggctgctgcct 81769
to top
>gb|AC018682.4| Homo sapiens BAC clone RP11-417F21 from 2, complete sequence
          Length = 181405

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     agatggctgctgccttctc 27
             |||||||||||||||||||
Sbjct: 25978 agatggctgctgccttctc 25996
to top
>gb|AC084073.22| Mus musculus strain C57BL/6J chromosome 1 clone rp23-85a8, complete
             sequence
          Length = 236834

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 6     cagagatggctgctgccttctcc 28
             ||||||||||| |||||||||||
Sbjct: 81636 cagagatggcttctgccttctcc 81658
to top
>gb|AF263282.1|AF263282 Filobasidiella neoformans var. neoformans clone CRYP01, complete
             sequence
          Length = 109900

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    agaagctcaagaagcaggt 93
             |||||||||||||||||||
Sbjct: 17419 agaagctcaagaagcaggt 17401
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 78      agctcaagaagcaggtgacctcg 100
               ||||||||||||||| |||||||
Sbjct: 5514547 agctcaagaagcaggcgacctcg 5514525



 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 33     ccgtcggggctccggcttctacg 55
              |||||| ||||||||||||||||
Sbjct: 435590 ccgtcgtggctccggcttctacg 435612
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>emb|AJ323602.1|HSA323602 Homo sapiens genomic sequence surrounding NotI site, clone NB6-823R
          Length = 763

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  aagctcaagaagcaggtga 95
           |||||||||||||||||||
Sbjct: 267 aagctcaagaagcaggtga 249
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>emb|CT027588.10| Mouse DNA sequence from clone RP23-461P14 on chromosome 9, complete
              sequence
          Length = 182404

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 76     gaagctcaagaagcaggtg 94
              |||||||||||||||||||
Sbjct: 157117 gaagctcaagaagcaggtg 157099
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>dbj|AP003464.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-768K4, complete
              sequence
          Length = 148000

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      cacagagatggctgctgcc 22
              |||||||||||||||||||
Sbjct: 111967 cacagagatggctgctgcc 111985


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,290,683
Number of Sequences: 3902068
Number of extensions: 1290683
Number of successful extensions: 99256
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98991
Number of HSP's gapped (non-prelim): 263
length of query: 159
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 137
effective length of database: 17,147,199,772
effective search space: 2349166368764
effective search space used: 2349166368764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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