ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63b14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT024077.1| Zea mays clone EL01N0513D07 mRNA sequence Length = 2174 Score = 591 bits (298), Expect = e-165 Identities = 478/538 (88%) Strand = Plus / Plus Query: 17 cgtcgtcaacgcgcaaggataaggggctttccgtcgacttcaaggagccgcaggttgcgg 76 ||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||| | Sbjct: 218 cgtcgtcctcgcgcagggatagggggctttccgtcgatttcaaggagccgcaggttgctg 277 Query: 77 attttgaggatcttgaagaggacaaattccttaatgctgttgttaaggtctactgcactc 136 | ||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||| Sbjct: 278 agtttgatgatcttgaagaggacaaattccttaatgctgtcgtcaaggtctattgcactc 337 Query: 137 atattagacctgattatgggcttccttggcagaagcaaaggcaacattcaagcactggga 196 |||| ||| |||||||| |||||||||||||||||||||||||||||||| | ||||| Sbjct: 338 atatcgcacccgattatggtcttccttggcagaagcaaaggcaacattcaagtagtggga 397 Query: 197 gtgcctttatgattggtgataataaactattgacaaatgcacattgcgttgaacatgaca 256 |||| ||||||||||| ||| |||||| ||||||||||| ||||||||||| || |||| Sbjct: 398 gtgcttttatgattggggatggtaaactcttgacaaatgcgcattgcgttgagcacgaca 457 Query: 257 cccagattaaagtaaagcgaaggggagatgacaaaaaatacgtcgccaaggtcttagcta 316 ||||| | ||||||||| |||||||||||||||||||||| | |||||||| ||||||| Sbjct: 458 cccaggtcaaagtaaagagaaggggagatgacaaaaaatatattgccaaggttttagcta 517 Query: 317 gaggcacagaatgtgatcttgcgatgctctctgtcgagaatgaagagttctggcgaggta 376 | || ||||| ||||||||| |||| ||||| |||||||||||||||||| |||| | Sbjct: 518 ggggtgttgaatgcgatcttgcgttgctatctgttgagaatgaagagttctggagaggaa 577 Query: 377 cagaaccacttcaacttggtcgtttgccatgtcttcaggattcagtaactgttgtcgggt 436 |||| ||||||| |||||||||||||||| ||||||||||||||||||||||| || | Sbjct: 578 cagaggcacttcattttggtcgtttgccatgccttcaggattcagtaactgttgtgggat 637 Query: 437 atcctcttggtggagacactatatctgtgacaaaaggcgttgtatcacgcattgaggtca 496 |||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 638 atcctcttggtggagacactatatctgtaacaaaaggcgttgtgtcgcgcattgaggtca 697 Query: 497 caccatatgcgcatggaacatcagatcttcttggggttcaaattgatgcagcaataaa 554 | |||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||| Sbjct: 698 ctccatatgcacatggaacatcagatcttcttggcattcaaattgacgcagccataaa 755
>dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E14, full insert sequence Length = 2157 Score = 547 bits (276), Expect = e-152 Identities = 450/508 (88%) Strand = Plus / Plus Query: 47 ccgtcgacttcaaggagccgcaggttgcggattttgaggatcttgaagaggacaaattcc 106 |||| |||||||||||| ||||||| | ||||| ||||| ||||||||||||||||||| Sbjct: 300 ccgttgacttcaaggagtcgcaggtctcagatttcgaggaccttgaagaggacaaattcc 359 Query: 107 ttaatgctgttgttaaggtctactgcactcatattagacctgattatgggcttccttggc 166 |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 360 ttaatgctgtagttaaggtctattgcactcatattgcacctgattatgggcttccttggc 419 Query: 167 agaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaactat 226 ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| Sbjct: 420 agaagcaaaggcaacatgcaagcacagggagtgcctttatgattggtgatggcaaactat 479 Query: 227 tgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaaggggagatg 286 |||||||||||||||| ||||| |||||||||||| | ||||||||| |||||||||||| Sbjct: 480 tgacaaatgcacattgtgttgagcatgacacccaggtcaaagtaaagagaaggggagatg 539 Query: 287 acaaaaaatacgtcgccaaggtcttagctagaggcacagaatgtgatcttgcgatgctct 346 |||||||||| | |||||||| |||| || || | || ||||| ||||| |||| | Sbjct: 540 acaaaaaatatattgccaaggttctagcaaggggtattgagtgtgaccttgcattgctgt 599 Query: 347 ctgtcgagaatgaagagttctggcgaggtacagaaccacttcaacttggtcgtttgccat 406 |||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| ||||| | Sbjct: 600 ctgttgagaatgaggaattctggcgaggaacagagccacttcaactgggtcgcttgccgt 659 Query: 407 gtcttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtga 466 | ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| | Sbjct: 660 gccttcaggattcagtaactgttgtgggatatcctcttggtggagacacgatatctgtaa 719 Query: 467 caaaaggcgttgtatcacgcattgaggtcacaccatatgcgcatggaacatcagatcttc 526 ||||||| ||||| |||||||| |||||||| |||||||| |||||||| |||||||||| Sbjct: 720 caaaaggtgttgtttcacgcatcgaggtcactccatatgcacatggaacttcagatcttc 779 Query: 527 ttggggttcaaattgatgcagcaataaa 554 |||| ||||||| |||||||||||||| Sbjct: 780 ttggcattcaaatcgatgcagcaataaa 807
>dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I18, full insert sequence Length = 2231 Score = 539 bits (272), Expect = e-150 Identities = 449/508 (88%) Strand = Plus / Plus Query: 47 ccgtcgacttcaaggagccgcaggttgcggattttgaggatcttgaagaggacaaattcc 106 |||| |||||||||||| ||||||| | ||||| ||||| ||||||||||||||||||| Sbjct: 366 ccgttgacttcaaggagtcgcaggtctcagatttcgaggaccttgaagaggacaaattcc 425 Query: 107 ttaatgctgttgttaaggtctactgcactcatattagacctgattatgggcttccttggc 166 |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 426 ttaatgctgtagttaaggtctattgcactcatattgcacctgattatgggcttccttggc 485 Query: 167 agaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaactat 226 ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| Sbjct: 486 agaagcaaaggcaacatgcaagcacagggagtgcctttatgattggtgatggcaaactat 545 Query: 227 tgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaaggggagatg 286 |||||||||||||||| ||||| |||||||||||| | ||||||||| |||||||||||| Sbjct: 546 tgacaaatgcacattgtgttgagcatgacacccaggtcaaagtaaagagaaggggagatg 605 Query: 287 acaaaaaatacgtcgccaaggtcttagctagaggcacagaatgtgatcttgcgatgctct 346 |||||||||| | |||||||| |||| || || | || ||||| ||||| |||| | Sbjct: 606 acaaaaaatatattgccaaggttctagcaaggggtattgagtgtgaccttgcattgctgt 665 Query: 347 ctgtcgagaatgaagagttctggcgaggtacagaaccacttcaacttggtcgtttgccat 406 |||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| ||||| | Sbjct: 666 ctgttgagaatgaggaattctggcgaggaacagagccacttcaactgggtcgcttgccgt 725 Query: 407 gtcttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtga 466 | ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| | Sbjct: 726 gccttcaggattcagtaactgttgtgggatatcctcttggtggagacacgatatctgtaa 785 Query: 467 caaaaggcgttgtatcacgcattgaggtcacaccatatgcgcatggaacatcagatcttc 526 || |||| ||||| |||||||| |||||||| |||||||| |||||||| |||||||||| Sbjct: 786 cagaaggtgttgtttcacgcatcgaggtcactccatatgcacatggaacttcagatcttc 845 Query: 527 ttggggttcaaattgatgcagcaataaa 554 |||| ||||||| |||||||||||||| Sbjct: 846 ttggcattcaaatcgatgcagcaataaa 873
>dbj|AK059221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D03, full insert sequence Length = 1704 Score = 216 bits (109), Expect = 6e-53 Identities = 235/277 (84%), Gaps = 5/277 (1%) Strand = Plus / Plus Query: 283 gatgacaaaaaatacgtcgccaaggtcttagctagaggcacagaatgtgatcttgcgatg 342 |||||||||||||| | |||||||| |||| || || | || ||||| ||||| || Sbjct: 1 gatgacaaaaaatatattgccaaggttctagcaaggggtattgagtgtgaccttgcattg 60 Query: 343 ctctctgtcgagaatgaagagttctggcgaggtacagaaccacttcaacttggtcgtttg 402 || ||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| ||| Sbjct: 61 ctgtctgttgagaatgaggaattctggcgaggaacagagccacttcaactgggtcgcttg 120 Query: 403 ccatgtcttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatct 462 || || ||||||||||||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 121 ccgtgccttcaggattcagtaactgttgtgggatatcctcttggtggagacacgatatct 180 Query: 463 gtgacaaaaggcgttgtatcacgcattg-----aggtcacaccatatgcgcatggaacat 517 || |||||||| ||||| |||||||| | ||||||| |||||||| |||||||| | Sbjct: 181 gtaacaaaaggtgttgtttcacgcatcgagcccaggtcactccatatgcacatggaactt 240 Query: 518 cagatcttcttggggttcaaattgatgcagcaataaa 554 ||||||||||||| ||||||| |||||||||||||| Sbjct: 241 cagatcttcttggcattcaaatcgatgcagcaataaa 277
>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22, complete sequence Length = 173903 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 411 tcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgacaaa 470 ||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 115145 tcaggattcagtaactgttgtgggatatcctcttggtggagacacgatatctgtaacaaa 115204 Query: 471 aggcgttgtatcacgcattgaggt 494 ||| ||||| |||||||| ||||| Sbjct: 115205 aggtgttgtttcacgcatcgaggt 115228 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 122 aggtctactgcactcatattagacctgattatgggcttccttggcagaagcaaaggcaac 181 ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 113101 aggtctattgcactcatattgcacctgattatgggcttccttggcagaagcaaaggcaac 113160 Query: 182 attcaagcactgggag 197 || ||||||| ||||| Sbjct: 113161 atgcaagcacagggag 113176 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 196 agtgcctttatgattggtgataataaactattgacaaatgcacattgcgttgaacatgac 255 ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 113594 agtgcctttatgattggtgatggcaaactattgacaaatgcacattgtgttgagcatgac 113653 Query: 256 acccag 261 |||||| Sbjct: 113654 acccag 113659 Score = 79.8 bits (40), Expect = 9e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 491 aggtcacaccatatgcgcatggaacatcagatcttcttggggttcaaattgatgcagcaa 550 ||||||| |||||||| |||||||| |||||||||||||| ||||||| |||||||||| Sbjct: 115909 aggtcactccatatgcacatggaacttcagatcttcttggcattcaaatcgatgcagcaa 115968 Query: 551 taaa 554 |||| Sbjct: 115969 taaa 115972 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 76 gattttgaggatcttgaagaggacaaattccttaatgctgttgttaaggt 125 ||||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 112870 gatttcgaggaccttgaagaggacaaattccttaatgctgtagttaaggt 112919 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 328 tgtgatcttgcgatgctctctgtcgagaatgaagagttctggcgaggtacagaaccactt 387 ||||| ||||| |||| ||||| |||||||| || ||||||||||| ||||| |||||| Sbjct: 114868 tgtgaccttgcattgctgtctgttgagaatgaggaattctggcgaggaacagagccactt 114927 Query: 388 caacttggtcgtttgccatgtcttcagg 415 ||||| ||||| ||||| || ||||||| Sbjct: 114928 caactgggtcgcttgccgtgccttcagg 114955 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 88 cttgaagaggacaaattccttaatgctgttgttaaggt 125 ||||||||||||| ||||||||||||||| |||||||| Sbjct: 114549 cttgaagaggacatattccttaatgctgtagttaaggt 114512 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 265 aaagtaaagcgaaggggagatgacaaaaaata 296 ||||||||| |||||||||||||||||||||| Sbjct: 114131 aaagtaaagagaaggggagatgacaaaaaata 114162
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 411 tcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgacaaa 470 ||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 2668625 tcaggattcagtaactgttgtgggatatcctcttggtggagacacgatatctgtaacaaa 2668684 Query: 471 aggcgttgtatcacgcattgaggt 494 ||| ||||| |||||||| ||||| Sbjct: 2668685 aggtgttgtttcacgcatcgaggt 2668708 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 122 aggtctactgcactcatattagacctgattatgggcttccttggcagaagcaaaggcaac 181 ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2666581 aggtctattgcactcatattgcacctgattatgggcttccttggcagaagcaaaggcaac 2666640 Query: 182 attcaagcactgggag 197 || ||||||| ||||| Sbjct: 2666641 atgcaagcacagggag 2666656 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 196 agtgcctttatgattggtgataataaactattgacaaatgcacattgcgttgaacatgac 255 ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 2667074 agtgcctttatgattggtgatggcaaactattgacaaatgcacattgtgttgagcatgac 2667133 Query: 256 acccag 261 |||||| Sbjct: 2667134 acccag 2667139 Score = 79.8 bits (40), Expect = 9e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 491 aggtcacaccatatgcgcatggaacatcagatcttcttggggttcaaattgatgcagcaa 550 ||||||| |||||||| |||||||| |||||||||||||| ||||||| |||||||||| Sbjct: 2669389 aggtcactccatatgcacatggaacttcagatcttcttggcattcaaatcgatgcagcaa 2669448 Query: 551 taaa 554 |||| Sbjct: 2669449 taaa 2669452 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 76 gattttgaggatcttgaagaggacaaattccttaatgctgttgttaaggt 125 ||||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 2666350 gatttcgaggaccttgaagaggacaaattccttaatgctgtagttaaggt 2666399 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 328 tgtgatcttgcgatgctctctgtcgagaatgaagagttctggcgaggtacagaaccactt 387 ||||| ||||| |||| ||||| |||||||| || ||||||||||| ||||| |||||| Sbjct: 2668348 tgtgaccttgcattgctgtctgttgagaatgaggaattctggcgaggaacagagccactt 2668407 Query: 388 caacttggtcgtttgccatgtcttcagg 415 ||||| ||||| ||||| || ||||||| Sbjct: 2668408 caactgggtcgcttgccgtgccttcagg 2668435 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 88 cttgaagaggacaaattccttaatgctgttgttaaggt 125 ||||||||||||| ||||||||||||||| |||||||| Sbjct: 2668029 cttgaagaggacatattccttaatgctgtagttaaggt 2667992 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 265 aaagtaaagcgaaggggagatgacaaaaaata 296 ||||||||| |||||||||||||||||||||| Sbjct: 2667611 aaagtaaagagaaggggagatgacaaaaaata 2667642
>ref|NM_130361.3| Arabidopsis thaliana DEGP2; serine-type peptidase/ trypsin AT2G47940 (DEGP2) mRNA, complete cds Length = 2214 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 |||||||||||||| ||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct: 714 cttcaggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttaca 773 Query: 469 aaaggcgttgtatcacgcattgaggt 494 ||||| ||||||||||| || ||||| Sbjct: 774 aaaggggttgtatcacgtatagaggt 799 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 163 tggcagaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaa 222 |||||||||||||||||| | | || ||||| ||||| ||||||||||| ||| || Sbjct: 468 tggcagaagcaaaggcaatttactagtactggaagtgcttttatgattggagatggcaag 527 Query: 223 ctattgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaagggga 282 || ||||| ||||| ||||| || ||||| || || ||| ||||||| ||| |||||||| Sbjct: 528 ctcttgaccaatgcccattgtgtcgaacacgatacacaggttaaagttaagagaagggga 587 Query: 283 gatga 287 ||||| Sbjct: 588 gatga 592
>gb|AF349516.1| Arabidopsis thaliana putative DegP2 protease (At2g47940) mRNA, complete cds Length = 1872 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 |||||||||||||| ||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct: 646 cttcaggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttaca 705 Query: 469 aaaggcgttgtatcacgcattgaggt 494 ||||| ||||||||||| || ||||| Sbjct: 706 aaaggggttgtatcacgtatagaggt 731 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 163 tggcagaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaa 222 |||||||||||||||||| | | || ||||| ||||| ||||||||||| ||| || Sbjct: 400 tggcagaagcaaaggcaatttactagtactggaagtgcttttatgattggagatggcaag 459 Query: 223 ctattgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaagggga 282 || ||||| ||||| ||||| || ||||| || || ||| ||||||| ||| |||||||| Sbjct: 460 ctcttgaccaatgcccattgtgtcgaacacgatacacaggttaaagttaagagaagggga 519 Query: 283 gatga 287 ||||| Sbjct: 520 gatga 524
>gb|AF326865.1| Arabidopsis thaliana putative DegP2 protease (At2g47940) mRNA, complete cds Length = 2171 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 |||||||||||||| ||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct: 656 cttcaggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttaca 715 Query: 469 aaaggcgttgtatcacgcattgaggt 494 ||||| ||||||||||| || ||||| Sbjct: 716 aaaggggttgtatcacgtatagaggt 741 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 163 tggcagaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaa 222 |||||||||||||||||| | | || ||||| ||||| ||||||||||| ||| || Sbjct: 410 tggcagaagcaaaggcaatttactagtactggaagtgcttttatgattggagatggcaag 469 Query: 223 ctattgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaagggga 282 || ||||| ||||| ||||| || ||||| || || ||| ||||||| ||| |||||||| Sbjct: 470 ctcttgaccaatgcccattgtgtcgaacacgatacacaggttaaagttaagagaagggga 529 Query: 283 gatga 287 ||||| Sbjct: 530 gatga 534
>gb|AY102139.1| Arabidopsis thaliana At2g47940/F17A22.33 mRNA, complete cds Length = 1824 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 |||||||||||||| ||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct: 646 cttcaggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttaca 705 Query: 469 aaaggcgttgtatcacgcattgaggt 494 ||||| ||||||||||| || ||||| Sbjct: 706 aaaggggttgtatcacgtatagaggt 731 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 163 tggcagaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaa 222 |||||||||||||||||| | | || ||||| ||||| ||||||||||| ||| || Sbjct: 400 tggcagaagcaaaggcaatttactagtactggaagtgcttttatgattggagatggcaag 459 Query: 223 ctattgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaagggga 282 || ||||| ||||| ||||| || ||||| || || ||| ||||||| ||| |||||||| Sbjct: 460 ctcttgaccaatgcccattgtgtcgaacacgatacacaggttaaagttaagagaagggga 519 Query: 283 gatga 287 ||||| Sbjct: 520 gatga 524
>gb|AY075700.1| Arabidopsis thaliana At2g47940/F17A22.33 mRNA, complete cds Length = 2155 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 |||||||||||||| ||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct: 656 cttcaggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttaca 715 Query: 469 aaaggcgttgtatcacgcattgaggt 494 ||||| ||||||||||| || ||||| Sbjct: 716 aaaggggttgtatcacgtatagaggt 741 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 163 tggcagaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaa 222 |||||||||||||||||| | | || ||||| ||||| ||||||||||| ||| || Sbjct: 410 tggcagaagcaaaggcaatttactagtactggaagtgcttttatgattggagatggcaag 469 Query: 223 ctattgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaagggga 282 || ||||| ||||| ||||| || ||||| || || ||| ||||||| ||| |||||||| Sbjct: 470 ctcttgaccaatgcccattgtgtcgaacacgatacacaggttaaagttaagagaagggga 529 Query: 283 gatga 287 ||||| Sbjct: 530 gatga 534
>emb|BX819857.1|CNS0AA34 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS39ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2210 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 |||||||||||||| ||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct: 734 cttcaggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttaca 793 Query: 469 aaaggcgttgtatcacgcattgaggt 494 ||||| ||||||||||| || ||||| Sbjct: 794 aaaggggttgtatcacgtatagaggt 819 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 163 tggcagaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaa 222 |||||||||||||||||| | | || ||||| ||||| ||||||||||| ||| || Sbjct: 488 tggcagaagcaaaggcaatttactagtactggaagtgcttttatgattggagatggcaag 547 Query: 223 ctattgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaagggga 282 || ||||| ||||| ||||| || ||||| || || ||| ||||||| ||| |||||||| Sbjct: 548 ctcttgaccaatgcccattgtgtcgaacacgatacacaggttaaagttaagagaagggga 607 Query: 283 gatga 287 ||||| Sbjct: 608 gatga 612
>gb|AF245171.1|AF245171 Arabidopsis thaliana DegP2 protease (DEGP2) mRNA, complete cds; nuclear gene for chloroplast product Length = 2280 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 |||||||||||||| ||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct: 714 cttcaggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttaca 773 Query: 469 aaaggcgttgtatcacgcattgaggt 494 ||||| ||||||||||| || ||||| Sbjct: 774 aaaggggttgtatcacgtatagaggt 799 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 163 tggcagaagcaaaggcaacattcaagcactgggagtgcctttatgattggtgataataaa 222 |||||||||||||||||| | | || ||||| ||||| ||||||||||| ||| || Sbjct: 468 tggcagaagcaaaggcaatttactagtactggaagtgcttttatgattggagatggcaag 527 Query: 223 ctattgacaaatgcacattgcgttgaacatgacacccagattaaagtaaagcgaagggga 282 || ||||| ||||| ||||| || ||||| || || ||| ||||||| ||| |||||||| Sbjct: 528 ctcttgaccaatgcccattgtgtcgaacacgatacacaggttaaagttaagagaagggga 587 Query: 283 gatga 287 ||||| Sbjct: 588 gatga 592
>gb|AC006072.4| Arabidopsis thaliana chromosome 2 clone T9J23 map CIC06C03, complete sequence Length = 81565 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 412 caggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgacaaaa 471 ||||||||||| ||||| || || ||||||||||| ||||| || || ||||| |||||| Sbjct: 23796 caggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttacaaaa 23737 Query: 472 ggcgttgtatcacgcattgaggt 494 || ||||||||||| || ||||| Sbjct: 23736 ggggttgtatcacgtatagaggt 23714
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 412 caggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgacaaaa 471 ||||||||||| ||||| || || ||||||||||| ||||| || || ||||| |||||| Sbjct: 88107 caggattcagttactgtcgtgggatatcctcttggaggagatacaatctctgttacaaaa 88048 Query: 472 ggcgttgtatcacgcattgaggt 494 || ||||||||||| || ||||| Sbjct: 88047 ggggttgtatcacgtatagaggt 88025
>ref|XM_467732.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1704 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 ||||||||| | || |||||||| || ||||| |||| |||||||| |||||||||||| Sbjct: 613 cttcaggatgctgtgactgttgttggttatccaattggaggagacacaatatctgtgaca 672 Query: 469 a 469 | Sbjct: 673 a 673
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 ||||||||| | || |||||||| || ||||| |||| |||||||| |||||||||||| Sbjct: 31118552 cttcaggatgctgtgactgttgttggttatccaattggaggagacacaatatctgtgaca 31118493 Query: 469 a 469 | Sbjct: 31118492 a 31118492
>dbj|AP004800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0585G03 Length = 173649 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 409 cttcaggattcagtaactgttgtcgggtatcctcttggtggagacactatatctgtgaca 468 ||||||||| | || |||||||| || ||||| |||| |||||||| |||||||||||| Sbjct: 107776 cttcaggatgctgtgactgttgttggttatccaattggaggagacacaatatctgtgaca 107717 Query: 469 a 469 | Sbjct: 107716 a 107716
>emb|AL354827.5| Human DNA sequence from clone RP11-280J7 on chromosome 13, complete sequence Length = 127641 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 ataataaactattgacaaatgca 237 ||||||||||||||||||||||| Sbjct: 110083 ataataaactattgacaaatgca 110105
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 213 tgataataaactattgacaaat 234 |||||||||||||||||||||| Sbjct: 1479702 tgataataaactattgacaaat 1479723
>emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 5/6 Length = 263335 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 213 tgataataaactattgacaaat 234 |||||||||||||||||||||| Sbjct: 102958 tgataataaactattgacaaat 102979
>gb|AC020713.7| Homo sapiens BAC clone RP11-439B18 from 4, complete sequence Length = 187350 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 aaggggagatgacaaaaaata 296 ||||||||||||||||||||| Sbjct: 68039 aaggggagatgacaaaaaata 68059
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gattttgaggatcttgaaga 95 |||||||||||||||||||| Sbjct: 755998 gattttgaggatcttgaaga 756017
>gb|AC161229.10| Mus musculus chromosome 7, clone RP24-88J19, complete sequence Length = 189105 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tcgccaaggtcttagctaga 318 |||||||||||||||||||| Sbjct: 64181 tcgccaaggtcttagctaga 64162
>gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, complete sequence Length = 159722 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 acattgcgttgaacatgaca 256 |||||||||||||||||||| Sbjct: 73023 acattgcgttgaacatgaca 73042
>emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in linkage group 2, complete sequence Length = 244700 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gaagcaaaggcaacattcaa 187 |||||||||||||||||||| Sbjct: 47611 gaagcaaaggcaacattcaa 47592
>ref|XM_570220.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND02790) partial mRNA Length = 571 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gattttgaggatcttgaaga 95 |||||||||||||||||||| Sbjct: 267 gattttgaggatcttgaaga 286
>gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, complete sequence Length = 209838 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ccatgtcttcaggattcagt 422 |||||||||||||||||||| Sbjct: 192989 ccatgtcttcaggattcagt 192970
>emb|AL365361.12| Human DNA sequence from clone RP11-284N8 on chromosome 1 Contains the KCNA2 gene for a potassium voltage-gated channel from the shaker-related subfamily member 2, the KCNA3 gene for a potassium voltage-gated channel from the shaker-related subfamily member 3 and two CpG islands, complete sequence Length = 193182 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gcaaaggcaacattcaagca 190 |||||||||||||||||||| Sbjct: 176615 gcaaaggcaacattcaagca 176596
>emb|AL049190.1|SPBC31E1 S.pombe chromosome II cosmid c31E1 Length = 16920 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gattttgaggatcttgaaga 95 |||||||||||||||||||| Sbjct: 16258 gattttgaggatcttgaaga 16277
>gb|AC006484.2| Homo sapiens chromosome 5, clone hRPK.448_K_10, complete sequence Length = 156814 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tttgccatgtcttcaggatt 418 |||||||||||||||||||| Sbjct: 51002 tttgccatgtcttcaggatt 51021
>gb|AC096590.4| Homo sapiens BAC clone RP11-751A18 from 4, complete sequence Length = 182559 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gacaaattccttaatgctgt 116 |||||||||||||||||||| Sbjct: 13014 gacaaattccttaatgctgt 13033
>gb|AC008657.8| Homo sapiens chromosome 5 clone CTB-19H10, complete sequence Length = 166637 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gacaaattccttaatgctgt 116 |||||||||||||||||||| Sbjct: 62574 gacaaattccttaatgctgt 62555
>ref|NM_001021009.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC31E1.06), partial mRNA Length = 3366 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gattttgaggatcttgaaga 95 |||||||||||||||||||| Sbjct: 1852 gattttgaggatcttgaaga 1871
>emb|AL132990.4|CNS01DTY Human chromosome 14 DNA sequence BAC R-262P9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181004 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gatcttgcgatgctctctgt 350 |||||||||||||||||||| Sbjct: 28394 gatcttgcgatgctctctgt 28375
>emb|AL132708.3|CNS01DTA Human chromosome 14 DNA sequence BAC R-349I1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 147505 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gatcttgcgatgctctctgt 350 |||||||||||||||||||| Sbjct: 77452 gatcttgcgatgctctctgt 77471
>gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204618 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ccatgtcttcaggattcagt 422 |||||||||||||||||||| Sbjct: 161135 ccatgtcttcaggattcagt 161154
>gb|AC004698.1|AC004698 PGAK extends from cosmid 800, accession U41410, complete sequence Length = 17855 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gattttgaggatcttgaaga 95 |||||||||||||||||||| Sbjct: 16410 gattttgaggatcttgaaga 16429
>emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chromosome 1q24.3-25.3, complete sequence Length = 119853 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gcaaaggcaacattcaagca 190 |||||||||||||||||||| Sbjct: 21368 gcaaaggcaacattcaagca 21349
>gb|AC165077.3| Mus musculus BAC clone RP24-369J8 from chromosome 7, complete sequence Length = 179228 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tcgccaaggtcttagctaga 318 |||||||||||||||||||| Sbjct: 175085 tcgccaaggtcttagctaga 175066 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,416,446 Number of Sequences: 3902068 Number of extensions: 4416446 Number of successful extensions: 80550 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80413 Number of HSP's gapped (non-prelim): 132 length of query: 559 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 536 effective length of database: 17,143,297,704 effective search space: 9188807569344 effective search space used: 9188807569344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
