>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 28.1 bits (61), Expect(2) = 0.55
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 169 EITASQEEASTRKQQSSRAL*RNRQQDGRDGGSRCRA*PAGAPKGQGECVEEAVAGQGDE 348
           EI  S EE+  R++ + +A   +    G DGG        G    +GE  EE   G GDE
Sbjct: 33  EIVYSAEESENRQEATPQAG-SDSDSGGGDGGDGDGGSGGGGDGEEGEGGEEGDEGDGDE 91



 Score = 23.9 bits (50), Expect(2) = 0.55
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 464 DEGENAGGARRAPRRDTGGG 523
           DEG + GG R  P    GGG
Sbjct: 97  DEGGSGGGPRSMPLSTEGGG 116

>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)|
          Length = 1425

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 335 PATASSTHSPCPLGAPAGHARHLEPPSLPS 246
           PA A+S  SP  LG+ A    HL+ PSLP+
Sbjct: 898 PAAAASIKSPPVLGSAAASPVHLKSPSLPA 927

>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)|
          Length = 1426

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 335 PATASSTHSPCPLGAPAGHARHLEPPSLPS 246
           PA A+S  SP  LG+ A    HL+ PSLP+
Sbjct: 899 PAAAASIKSPPVLGSAAASPVHLKSPSLPA 928

>SSY23_ORYSA (Q5DWW9) Soluble starch synthase 2-3, chloroplast precursor (EC|
           2.4.1.21) (Soluble starch synthase II-3) (Starch
           synthase IIa)
          Length = 810

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 19/62 (30%)
 Frame = +2

Query: 428 PTRRAASRIRKADEGENAGGARRA----------------PRRDTGGGVG---ARRNSDD 550
           P RR A  +R+AD+GEN     RA                P R   GGVG    RR +  
Sbjct: 60  PRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGTVP 119

Query: 551 PV 556
           PV
Sbjct: 120 PV 121

>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 707

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 437 RAASRIRKADEGENAGGARRAPRRDTGGGVGARRNSDD 550
           R   R  K D+ +N GG R+  ++  GGG   R+  DD
Sbjct: 255 RGRDRRNKGDDQQNQGGGRQDRQQQGGGGRQDRQQHDD 292

>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36) (TIS11A protein) (TIS11)
          Length = 324

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 21/65 (32%)
 Frame = -2

Query: 591 GACSLAARCPTITGSSEFLLAP---------------------TPPPVSLLGALRAPPAF 475
           G C   +RC  I   SE L AP                     +PPP SL G   +  +F
Sbjct: 152 GRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLPSGRRTSPPPASLAGPSVSSWSF 211

Query: 474 SPSSA 460
           SPSS+
Sbjct: 212 SPSSS 216

>LACTB_HUMAN (P83111) Serine beta-lactamase-like protein LACTB|
          Length = 547

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +2

Query: 173 SQPLRKKP------PQGSSNPAEPCSETDNRTGETAAPGAGRDLLARLKDRVNA 316
           + PL + P      P     PA PCS    R  E++     RDLL R+KD V A
Sbjct: 76  ASPLAEPPQEQSLAPWSPQTPAPPCSRCFARAIESS-----RDLLHRIKDEVGA 124

>HIC1_MOUSE (Q9R1Y5) Hypermethylated in cancer 1 protein (Hic-1)|
          Length = 892

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 182 LRKKPPQGSSNPAEPCSETDNRTGETAAPGAG 277
           L KK P GSS P  P SE +      + PGAG
Sbjct: 403 LSKKSPPGSSVPERPLSERELPPRPDSPPGAG 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,208,612
Number of Sequences: 219361
Number of extensions: 1315022
Number of successful extensions: 5478
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5455
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)