ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62m13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473782.1| Oryza sativa (japonica cultivar-group), predic... 44 0.52
2emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 44 0.52
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
4dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.52
5dbj|AK073515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.52
6dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.52
7ref|XM_473064.1| Oryza sativa (japonica cultivar-group), predic... 42 2.0
8ref|XM_654669.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.0
9gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosom... 42 2.0
10emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 2.0
11gb|AE014075.1| Escherichia coli CFT073, complete genome 42 2.0
12gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 2.0
13emb|AJ586887.1| Escherichia coli Genomic Island I, strain Nissle... 42 2.0
14emb|AJ515252.1|ECO515252 Escherichia coli microcin operon, strai... 42 2.0
15emb|AJ515251.1|ECO515251 Escherichia coli microcin operon, strai... 42 2.0
16gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete se... 42 2.0
17dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
18emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chrom... 42 2.0
19emb|AJ009631.3|ECAJ9631 Escherichia coli H47 microcin genetic sy... 42 2.0
20gb|AY605054.1| Comamonas testosteroni p-chloronitrobenzene degra... 40 8.1
21ref|XM_550395.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.1
22ref|NM_185606.1| Oryza sativa (japonica cultivar-group), predic... 40 8.1
23gb|AC162799.4| Mus musculus BAC clone RP24-392E13 from chromosom... 40 8.1
24gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
25gb|AY658036.1| Synthetic construct Peudomonas aeruginosa clone F... 40 8.1
26gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
27ref|XM_658661.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.1
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.1
29emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 40 8.1
30gb|AC163343.2| Mus musculus BAC clone RP23-472D11 from chromosom... 40 8.1
31dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 8.1
32gb|DQ207951.1| Comamonas sp. CNB-1 putative regulatory protein (... 40 8.1
33gb|AC008393.7| Homo sapiens chromosome 5 clone CTC-241N9, comple... 40 8.1
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
38gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.1
39gb|AC010285.4|AC010285 Homo sapiens chromosome 5 clone CTC-563A5... 40 8.1
40dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
41dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
42dbj|AK120377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
43dbj|AK111000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
44dbj|AK107480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
45dbj|AK101286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
46emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on ch... 40 8.1
47dbj|AK063262.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
48gb|DQ306889.1| Pseudomonas putida plasmid pZWL73 putative ferred... 40 8.1
49gb|AF009414.1|AF009414 Mus musculus SOX11 (Sox11) mRNA, complete... 40 8.1 
>ref|XM_473782.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 440 gcagcgtcccggataaggaaggcagacgaaggcgaaaatgcgggag 485
           ||||| ||||| |||||||||||||| ||||| | |||||| ||||
Sbjct: 478 gcagcttcccgaataaggaaggcagatgaaggtgcaaatgcaggag 523
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>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
              complete sequence
          Length = 166804

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 440    gcagcgtcccggataaggaaggcagacgaaggcgaaaatgcgggag 485
              ||||| ||||| |||||||||||||| ||||| | |||||| ||||
Sbjct: 108115 gcagcttcccgaataaggaaggcagatgaaggtgcaaatgcaggag 108070
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 440      gcagcgtcccggataaggaaggcagacgaaggcgaaaatgcgggag 485
                ||||| ||||| |||||||||||||| ||||| | |||||| ||||
Sbjct: 30474738 gcagcttcccgaataaggaaggcagatgaaggtgcaaatgcaggag 30474693



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 345      tgagcagctcgtcgtcgtcgtccgg 369
                ||||||||||||||||| |||||||
Sbjct: 25020763 tgagcagctcgtcgtcggcgtccgg 25020787
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>dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077P18, full
           insert sequence
          Length = 1493

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 440 gcagcgtcccggataaggaaggcagacgaaggcgaaaatgcgggag 485
           ||||| ||||| |||||||||||||| ||||| | |||||| ||||
Sbjct: 633 gcagcttcccgaataaggaaggcagatgaaggtgcaaatgcaggag 678
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>dbj|AK073515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040F16, full
            insert sequence
          Length = 2340

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 440  gcagcgtcccggataaggaaggcagacgaaggcgaaaatgcgggag 485
            ||||| ||||| |||||||||||||| ||||| | |||||| ||||
Sbjct: 1599 gcagcttcccgaataaggaaggcagatgaaggtgcaaatgcaggag 1554
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>dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160D07, full
           insert sequence
          Length = 1363

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 440 gcagcgtcccggataaggaaggcagacgaaggcgaaaatgcgggag 485
           ||||| ||||| |||||||||||||| ||||| | |||||| ||||
Sbjct: 633 gcagcttcccgaataaggaaggcagatgaaggtgcaaatgcaggag 678
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>ref|XM_473064.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2541

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 345 tgagcagctcgtcgtcgtcgtccgg 369
           ||||||||||||||||| |||||||
Sbjct: 97  tgagcagctcgtcgtcggcgtccgg 73
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>ref|XM_654669.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2157.2), mRNA
          Length = 1272

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 513  ccggtggtggtgttggtgcca 533
            |||||||||||||||||||||
Sbjct: 1136 ccggtggtggtgttggtgcca 1116
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>gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosome 7, complete sequence
          Length = 205352

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 378   gtgccagttcttctggtggtg 398
             |||||||||||||||||||||
Sbjct: 46211 gtgccagttcttctggtggtg 46191
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
              complete sequence
          Length = 173171

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 345    tgagcagctcgtcgtcgtcgtccgg 369
              ||||||||||||||||| |||||||
Sbjct: 141348 tgagcagctcgtcgtcggcgtccgg 141372
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 377     agtgccagttcttctggtggtggcg 401
               |||||||||||||||| ||||||||
Sbjct: 1177017 agtgccagttcttctgctggtggcg 1177041
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 269    ggtgccgggcgtgacctgctg 289
              |||||||||||||||||||||
Sbjct: 846193 ggtgccgggcgtgacctgctg 846173
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>emb|AJ586887.1| Escherichia coli Genomic Island I, strain Nissle 1917
          Length = 97552

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 377   agtgccagttcttctggtggtggcg 401
             |||||||||||||||| ||||||||
Sbjct: 37842 agtgccagttcttctgctggtggcg 37866
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>emb|AJ515252.1|ECO515252 Escherichia coli microcin operon, strain CA58
          Length = 13997

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 377  agtgccagttcttctggtggtggcg 401
            |||||||||||||||| ||||||||
Sbjct: 6648 agtgccagttcttctgctggtggcg 6672
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>emb|AJ515251.1|ECO515251 Escherichia coli microcin operon, strain CA46
          Length = 12707

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 377  agtgccagttcttctggtggtggcg 401
            |||||||||||||||| ||||||||
Sbjct: 5291 agtgccagttcttctgctggtggcg 5315
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>gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete sequence
          Length = 35427

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   gagcagctcgtcgtcgtcgtc 366
             |||||||||||||||||||||
Sbjct: 11124 gagcagctcgtcgtcgtcgtc 11144
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>dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D11, full
           insert sequence
          Length = 3038

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 345 tgagcagctcgtcgtcgtcgtccgg 369
           ||||||||||||||||| |||||||
Sbjct: 250 tgagcagctcgtcgtcggcgtccgg 226
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>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete
             sequence
          Length = 184551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 244   caggacgggagagacggcggctccaggtg 272
             |||||||||||||||  ||||||||||||
Sbjct: 18658 caggacgggagagacaccggctccaggtg 18686
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>emb|AJ009631.3|ECAJ9631 Escherichia coli H47 microcin genetic system
          Length = 16823

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 377  agtgccagttcttctggtggtggcg 401
            |||||||||||||||| ||||||||
Sbjct: 6510 agtgccagttcttctgctggtggcg 6534
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>gb|AY605054.1| Comamonas testosteroni p-chloronitrobenzene degradation gene cluster,
             complete sequence
          Length = 15076

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   gaatgcgtcgaggaagcggt 329
             ||||||||||||||||||||
Sbjct: 14309 gaatgcgtcgaggaagcggt 14290
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>ref|XM_550395.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2715

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 353 tcgtcgtcgtcgtccggtga 372
           ||||||||||||||||||||
Sbjct: 273 tcgtcgtcgtcgtccggtga 292
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>ref|NM_185606.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1287

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 acaaggaagcagcaatccag 218
           ||||||||||||||||||||
Sbjct: 527 acaaggaagcagcaatccag 546
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>gb|AC162799.4| Mus musculus BAC clone RP24-392E13 from chromosome 3, complete sequence
          Length = 177586

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    aagcctccacaaggaagcag 210
              ||||||||||||||||||||
Sbjct: 130674 aagcctccacaaggaagcag 130693
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>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017N18, complete sequence
          Length = 156643

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   ccggtggtggtgttggtgcc 532
             ||||||||||||||||||||
Sbjct: 71698 ccggtggtggtgttggtgcc 71679
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>gb|AY658036.1| Synthetic construct Peudomonas aeruginosa clone FLH040381.01F
           PA0463 gene, partial cds
          Length = 690

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 406 ccggtcatcagcggtgtcgaggcc 429
           ||||||||||||||| ||||||||
Sbjct: 166 ccggtcatcagcggtttcgaggcc 189
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>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I,
             complete sequence
          Length = 99587

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   ccggtggtggtgttggtgcc 532
             ||||||||||||||||||||
Sbjct: 59016 ccggtggtggtgttggtgcc 58997
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>ref|XM_658661.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6149.2),
          mRNA
          Length = 1893

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 4  ctcctcttcagggaggacag 23
          ||||||||||||||||||||
Sbjct: 80 ctcctcttcagggaggacag 99
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      agctcgtcgtcgtcgtccgg 369
                ||||||||||||||||||||
Sbjct: 11821424 agctcgtcgtcgtcgtccgg 11821405
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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  ggctccaggtgccgggcgtg 281
            ||||||||||||||||||||
Sbjct: 1290 ggctccaggtgccgggcgtg 1271
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>gb|AC163343.2| Mus musculus BAC clone RP23-472D11 from chromosome 13, complete
             sequence
          Length = 164331

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   agcaatccagcagagccttg 228
             ||||||||||||||||||||
Sbjct: 28564 agcaatccagcagagccttg 28545
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 402     ccacccggtcatcagcggtgtcga 425
               |||||||||||||| |||||||||
Sbjct: 3644837 ccacccggtcatcatcggtgtcga 3644860
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>gb|DQ207951.1| Comamonas sp. CNB-1 putative regulatory protein (cnbR), putative
            ferredoxin (orf1), 2-amino-5-chlorophenol 1,6-dioxygenase
            beta subunit (cnbCa), 2-amino-5-chlorophenol
            1,6-dioxygenase alpha subunit (cnbCb),
            2-amino-5-chloromuconic semialdehyde dehydrogenase
            (cnbD), putative 2-keto-4-pentenoate hydratase (cnbE),
            putative 4-oxalocrotonate decarboxylase (cnbF),
            4-oxalocrotonate tautomerase (cnbG),
            2-amino-5-chloromuconate deaminase (cnbH), and putative
            2-keto-4-pentenoate hydratase (cnbI) genes, complete cds
          Length = 10644

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  gaatgcgtcgaggaagcggt 329
            ||||||||||||||||||||
Sbjct: 5498 gaatgcgtcgaggaagcggt 5479
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>gb|AC008393.7| Homo sapiens chromosome 5 clone CTC-241N9, complete sequence
          Length = 166847

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ctcctcttcagggaggacag 23
              ||||||||||||||||||||
Sbjct: 165522 ctcctcttcagggaggacag 165541
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 199     acaaggaagcagcaatccag 218
               ||||||||||||||||||||
Sbjct: 3036425 acaaggaagcagcaatccag 3036444
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 513      ccggtggtggtgttggtgcc 532
                ||||||||||||||||||||
Sbjct: 28643906 ccggtggtggtgttggtgcc 28643887
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      agctcgtcgtcgtcgtccgg 369
                ||||||||||||||||||||
Sbjct: 11818187 agctcgtcgtcgtcgtccgg 11818168
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 353     tcgtcgtcgtcgtccggtga 372
               ||||||||||||||||||||
Sbjct: 4212031 tcgtcgtcgtcgtccggtga 4212012
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>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0035J18, from chromsome 3, complete sequence
          Length = 162711

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   agctcgtcgtcgtcgtccgg 369
             ||||||||||||||||||||
Sbjct: 89229 agctcgtcgtcgtcgtccgg 89248
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>gb|AC010285.4|AC010285 Homo sapiens chromosome 5 clone CTC-563A5, complete sequence
          Length = 124289

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ctcctcttcagggaggacag 23
             ||||||||||||||||||||
Sbjct: 22901 ctcctcttcagggaggacag 22920
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>dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0702F05
          Length = 145018

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    acaaggaagcagcaatccag 218
              ||||||||||||||||||||
Sbjct: 124374 acaaggaagcagcaatccag 124393
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>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1174_D05
          Length = 128525

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   tcgtcgtcgtcgtccggtga 372
             ||||||||||||||||||||
Sbjct: 49998 tcgtcgtcgtcgtccggtga 49979
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>dbj|AK120377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071N06, full
           insert sequence
          Length = 2715

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 353 tcgtcgtcgtcgtccggtga 372
           ||||||||||||||||||||
Sbjct: 273 tcgtcgtcgtcgtccggtga 292
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>dbj|AK111000.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E11, full
           insert sequence
          Length = 1449

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 agctcgtcgtcgtcgtccgg 369
           ||||||||||||||||||||
Sbjct: 703 agctcgtcgtcgtcgtccgg 722
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>dbj|AK107480.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C01, full
           insert sequence
          Length = 3451

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 513 ccggtggtggtgttggtgcc 532
           ||||||||||||||||||||
Sbjct: 179 ccggtggtggtgttggtgcc 160
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>dbj|AK101286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033F04, full
           insert sequence
          Length = 1623

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 acaaggaagcagcaatccag 218
           ||||||||||||||||||||
Sbjct: 683 acaaggaagcagcaatccag 702
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>emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on chromosome 13, complete
              sequence
          Length = 218075

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    agcaatccagcagagccttg 228
              ||||||||||||||||||||
Sbjct: 202243 agcaatccagcagagccttg 202224
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>dbj|AK063262.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A08, full
           insert sequence
          Length = 1602

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 agctcgtcgtcgtcgtccgg 369
           ||||||||||||||||||||
Sbjct: 539 agctcgtcgtcgtcgtccgg 558
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>gb|DQ306889.1| Pseudomonas putida plasmid pZWL73 putative ferredoxin,
            2-amino-5-chlorophenol 1,6-dioxygenase beta subunit
            (cnbCa), 2-amino-5-chlorophenol 1,6-dioxygenase alpha
            subunit (cnbCb), and putative ABC-transporter genes,
            complete cds; and putative 2-amino-5-chloromuconic
            semialdehyde dehydrogenase (cnbD) gene, partial cds
          Length = 4909

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  gaatgcgtcgaggaagcggt 329
            ||||||||||||||||||||
Sbjct: 4648 gaatgcgtcgaggaagcggt 4629
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>gb|AF009414.1|AF009414 Mus musculus SOX11 (Sox11) mRNA, complete cds
          Length = 2896

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 348 gcagctcgtcgtcgtcgtcc 367
           ||||||||||||||||||||
Sbjct: 889 gcagctcgtcgtcgtcgtcc 870


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,860,215
Number of Sequences: 3902068
Number of extensions: 3860215
Number of successful extensions: 102962
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101908
Number of HSP's gapped (non-prelim): 1054
length of query: 595
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 572
effective length of database: 17,143,297,704
effective search space: 9805966286688
effective search space used: 9805966286688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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