ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK109015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 371 2e-99
2dbj|AK072362.1| Oryza sativa (japonica cultivar-group) cDNA clon... 371 2e-99
3dbj|AK064226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 371 2e-99
4gb|AY108044.1| Zea mays PCO134708 mRNA sequence 250 5e-63
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 210 4e-51
6dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic D... 210 4e-51
7dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 210 4e-51
8emb|CR925725.10| Zebrafish DNA sequence from clone DKEYP-1D6 in ... 44 0.52
9gb|AF223462.1|AF223462 Synechococcus PCC7918 CpcB (cpcB) and Cpc... 44 0.52
10gb|AF223443.1|AF223443 Synechococcus sp. PS681 CpcB (cpcB) and C... 44 0.52
11gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
12ref|XM_753397.1| Ustilago maydis 521 hypothetical protein (UM023... 42 2.1
13gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complet... 42 2.1
14emb|CR643565.2|CNS0EVJN Tetraodon nigroviridis full-length cDNA 42 2.1
15emb|CR635850.1|CNS0EPLC Tetraodon nigroviridis full-length cDNA 42 2.1
16gb|AC090824.6| Homo sapiens chromosome 17, clone CTD-2532B14, co... 42 2.1
17gb|AC025505.11| Homo sapiens, clone RP11-651N3, complete sequence 42 2.1
18gb|AF223465.1|AF223465 Synechococcus PCC9005 CpcB (cpcB) and Cpc... 42 2.1
19gb|AF223455.1|AF223455 Synechococcus sp. PS685 CpcB (cpcB) and C... 42 2.1
20gb|AF223428.1|AF223428 Synechococcus sp. PS680 CpcB (cpcB) and C... 42 2.1
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
22gb|U76895.1|TAU76895 Triticum aestivum beta-tubulin 4 (Tubb4) mR... 42 2.1
23gb|L27212.1|HSBBICP Bovine herpesvirus type 1 transrepressor pro... 40 8.2
24gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 8.2
25emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome 40 8.2
26emb|X76943.1|BHVBICP22 Bovine herpesvirus type 1 BICP22 gene 40 8.2
27emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome... 40 8.2
28emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 8.2
29dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 8.2
30gb|AC016134.7| Homo sapiens chromosome 15 clone RP11-380D11 map ... 40 8.2
31gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 8.2
32gb|AC155819.2| Mus musculus BAC clone RP23-402F16 from chromosom... 40 8.2
33dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 8.2
34gb|AC155808.2| Mus musculus BAC clone RP24-267H3 from 12, comple... 40 8.2
35gb|AC140301.3| Mus musculus BAC clone RP23-435M8 from 5, complet... 40 8.2
36dbj|AB209431.1| Homo sapiens mRNA for TYRO3 protein tyrosine kin... 40 8.2

>dbj|AK109015.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-A06, full
           insert sequence
          Length = 956

 Score =  371 bits (187), Expect = 2e-99
 Identities = 271/299 (90%)
 Strand = Plus / Plus

                                                                       
Query: 58  ggagatgctgcgattcccggcgctgatgcggcagtggccgtcgccgccgctgattccggc 117
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 56  ggagatgctgcagttcccggcgctgatgcggcagtggccgtcgccgccgctgatcccggc 115

                                                                       
Query: 118 gtccacactcctccccgtgcccgcaactacccaggaggacgagctcctcctcgccatggc 177
           |||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 116 gtccacgctgctccccgtccccgccaccacccaggaggacgagctcctcctcgccatggc 175

                                                                       
Query: 178 cgagtccgacctcgaagacaagctgaacgcgatccgcaagaccaacagcaacctggtgat 237
           ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 176 cgagtccgacctcgaggacaagctgaacgagatccgcaagaccaacagtaacctggtgat 235

                                                                       
Query: 238 cataggcaagcccaccaacgacgtgaaggaggagtacgacgcggaggtggaagaggacga 297
           |||||||||||| |||  |||||| ||||||||||||||||| ||||  || || |||||
Sbjct: 236 cataggcaagccaaccggcgacgtcaaggaggagtacgacgccgaggccgaggacgacga 295

                                                                      
Query: 298 cgtcgacaacgttgacgaatccgacggggacgatttcgaccaagaaaccggctgagccg 356
           || ||||||||| || || |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 296 cgccgacaacgtcgaggagtccgacggagacgacttcgaccaggagaccggctgagccg 354



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>dbj|AK072362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063B12, full
           insert sequence
          Length = 3594

 Score =  371 bits (187), Expect = 2e-99
 Identities = 271/299 (90%)
 Strand = Plus / Plus

                                                                       
Query: 58  ggagatgctgcgattcccggcgctgatgcggcagtggccgtcgccgccgctgattccggc 117
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 114 ggagatgctgcagttcccggcgctgatgcggcagtggccgtcgccgccgctgatcccggc 173

                                                                       
Query: 118 gtccacactcctccccgtgcccgcaactacccaggaggacgagctcctcctcgccatggc 177
           |||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 174 gtccacgctgctccccgtccccgccaccacccaggaggacgagctcctcctcgccatggc 233

                                                                       
Query: 178 cgagtccgacctcgaagacaagctgaacgcgatccgcaagaccaacagcaacctggtgat 237
           ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 234 cgagtccgacctcgaggacaagctgaacgagatccgcaagaccaacagtaacctggtgat 293

                                                                       
Query: 238 cataggcaagcccaccaacgacgtgaaggaggagtacgacgcggaggtggaagaggacga 297
           |||||||||||| |||  |||||| ||||||||||||||||| ||||  || || |||||
Sbjct: 294 cataggcaagccaaccggcgacgtcaaggaggagtacgacgccgaggccgaggacgacga 353

                                                                      
Query: 298 cgtcgacaacgttgacgaatccgacggggacgatttcgaccaagaaaccggctgagccg 356
           || ||||||||| || || |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 354 cgccgacaacgtcgaggagtccgacggagacgacttcgaccaggagaccggctgagccg 412



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>dbj|AK064226.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G07, full
           insert sequence
          Length = 629

 Score =  371 bits (187), Expect = 2e-99
 Identities = 271/299 (90%)
 Strand = Plus / Plus

                                                                       
Query: 58  ggagatgctgcgattcccggcgctgatgcggcagtggccgtcgccgccgctgattccggc 117
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 111 ggagatgctgcagttcccggcgctgatgcggcagtggccgtcgccgccgctgatcccggc 170

                                                                       
Query: 118 gtccacactcctccccgtgcccgcaactacccaggaggacgagctcctcctcgccatggc 177
           |||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 171 gtccacgctgctccccgtccccgccaccacccaggaggacgagctcctcctcgccatggc 230

                                                                       
Query: 178 cgagtccgacctcgaagacaagctgaacgcgatccgcaagaccaacagcaacctggtgat 237
           ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 231 cgagtccgacctcgaggacaagctgaacgagatccgcaagaccaacagtaacctggtgat 290

                                                                       
Query: 238 cataggcaagcccaccaacgacgtgaaggaggagtacgacgcggaggtggaagaggacga 297
           |||||||||||| |||  |||||| ||||||||||||||||| ||||  || || |||||
Sbjct: 291 cataggcaagccaaccggcgacgtcaaggaggagtacgacgccgaggccgaggacgacga 350

                                                                      
Query: 298 cgtcgacaacgttgacgaatccgacggggacgatttcgaccaagaaaccggctgagccg 356
           || ||||||||| || || |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 351 cgccgacaacgtcgaggagtccgacggagacgacttcgaccaggagaccggctgagccg 409



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>gb|AY108044.1| Zea mays PCO134708 mRNA sequence
          Length = 647

 Score =  250 bits (126), Expect = 5e-63
 Identities = 249/290 (85%)
 Strand = Plus / Plus

                                                                       
Query: 59  gagatgctgcgattcccggcgctgatgcggcagtggccgtcgccgccgctgattccggcg 118
           ||||||||||  |||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 99  gagatgctgcagttcccggcgctgatgcggcagtggccatcgccggcgctgatcccggcg 158

                                                                       
Query: 119 tccacactcctccccgtgcccgcaactacccaggaggacgagctcctcctcgccatggcc 178
           ||||| || ||||||||||| || ||  |||||||||||||||| |||||| ||||||||
Sbjct: 159 tccacgctgctccccgtgccggccacctcccaggaggacgagcttctcctctccatggcc 218

                                                                       
Query: 179 gagtccgacctcgaagacaagctgaacgcgatccgcaagaccaacagcaacctggtgatc 238
           |||||||||||||| || |||||||||| |||||| |||||||||||| ||||||| |||
Sbjct: 219 gagtccgacctcgaggataagctgaacgagatccggaagaccaacagccacctggttatc 278

                                                                       
Query: 239 ataggcaagcccaccaacgacgtgaaggaggagtacgacgcggaggtggaagaggacgac 298
           || || ||||||||   ||||   ||||||||||||||||| |||||||| || ||||| 
Sbjct: 279 atcgggaagcccacgggcgacaccaaggaggagtacgacgctgaggtggaggacgacgat 338

                                                             
Query: 299 gtcgacaacgttgacgaatccgacggggacgatttcgaccaagaaaccgg 348
           |  |||||||| || || || ||||| ||||| |||||||| || |||||
Sbjct: 339 gcagacaacgtcgaggagtctgacggcgacgacttcgaccaggagaccgg 388



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  210 bits (106), Expect = 4e-51
 Identities = 133/142 (93%)
 Strand = Plus / Minus

                                                                            
Query: 58       ggagatgctgcgattcccggcgctgatgcggcagtggccgtcgccgccgctgattccggc 117
                |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 22995916 ggagatgctgcagttcccggcgctgatgcggcagtggccgtcgccgccgctgatcccggc 22995857

                                                                            
Query: 118      gtccacactcctccccgtgcccgcaactacccaggaggacgagctcctcctcgccatggc 177
                |||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 22995856 gtccacgctgctccccgtccccgccaccacccaggaggacgagctcctcctcgccatggc 22995797

                                      
Query: 178      cgagtccgacctcgaagacaag 199
                ||||||||||||||| ||||||
Sbjct: 22995796 cgagtccgacctcgaggacaag 22995775



 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                            
Query: 198      agctgaacgcgatccgcaagaccaacagcaacctggtgatcataggcaagcccaccaacg 257
                ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||  ||
Sbjct: 22995657 agctgaacgagatccgcaagaccaacagtaacctggtgatcataggcaagccaaccggcg 22995598

                                                                            
Query: 258      acgtgaaggaggagtacgacgcggaggtggaagaggacgacgtcgacaacgttgacgaat 317
                |||| ||||||||||||||||| ||||  || || ||||||| ||||||||| || || |
Sbjct: 22995597 acgtcaaggaggagtacgacgccgaggccgaggacgacgacgccgacaacgtcgaggagt 22995538

                                                       
Query: 318      ccgacggggacgatttcgaccaagaaaccggctgagccg 356
                ||||||| ||||| |||||||| || |||||||||||||
Sbjct: 22995537 ccgacggagacgacttcgaccaggagaccggctgagccg 22995499



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>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1067_B01
          Length = 100525

 Score =  210 bits (106), Expect = 4e-51
 Identities = 133/142 (93%)
 Strand = Plus / Minus

                                                                         
Query: 58    ggagatgctgcgattcccggcgctgatgcggcagtggccgtcgccgccgctgattccggc 117
             |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 20313 ggagatgctgcagttcccggcgctgatgcggcagtggccgtcgccgccgctgatcccggc 20254

                                                                         
Query: 118   gtccacactcctccccgtgcccgcaactacccaggaggacgagctcctcctcgccatggc 177
             |||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 20253 gtccacgctgctccccgtccccgccaccacccaggaggacgagctcctcctcgccatggc 20194

                                   
Query: 178   cgagtccgacctcgaagacaag 199
             ||||||||||||||| ||||||
Sbjct: 20193 cgagtccgacctcgaggacaag 20172



 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                         
Query: 198   agctgaacgcgatccgcaagaccaacagcaacctggtgatcataggcaagcccaccaacg 257
             ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||  ||
Sbjct: 20054 agctgaacgagatccgcaagaccaacagtaacctggtgatcataggcaagccaaccggcg 19995

                                                                         
Query: 258   acgtgaaggaggagtacgacgcggaggtggaagaggacgacgtcgacaacgttgacgaat 317
             |||| ||||||||||||||||| ||||  || || ||||||| ||||||||| || || |
Sbjct: 19994 acgtcaaggaggagtacgacgccgaggccgaggacgacgacgccgacaacgtcgaggagt 19935

                                                    
Query: 318   ccgacggggacgatttcgaccaagaaaccggctgagccg 356
             ||||||| ||||| |||||||| || |||||||||||||
Sbjct: 19934 ccgacggagacgacttcgaccaggagaccggctgagccg 19896



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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0016G10
          Length = 143211

 Score =  210 bits (106), Expect = 4e-51
 Identities = 133/142 (93%)
 Strand = Plus / Minus

                                                                          
Query: 58     ggagatgctgcgattcccggcgctgatgcggcagtggccgtcgccgccgctgattccggc 117
              |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 115718 ggagatgctgcagttcccggcgctgatgcggcagtggccgtcgccgccgctgatcccggc 115659

                                                                          
Query: 118    gtccacactcctccccgtgcccgcaactacccaggaggacgagctcctcctcgccatggc 177
              |||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 115658 gtccacgctgctccccgtccccgccaccacccaggaggacgagctcctcctcgccatggc 115599

                                    
Query: 178    cgagtccgacctcgaagacaag 199
              ||||||||||||||| ||||||
Sbjct: 115598 cgagtccgacctcgaggacaag 115577



 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                          
Query: 198    agctgaacgcgatccgcaagaccaacagcaacctggtgatcataggcaagcccaccaacg 257
              ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||  ||
Sbjct: 115459 agctgaacgagatccgcaagaccaacagtaacctggtgatcataggcaagccaaccggcg 115400

                                                                          
Query: 258    acgtgaaggaggagtacgacgcggaggtggaagaggacgacgtcgacaacgttgacgaat 317
              |||| ||||||||||||||||| ||||  || || ||||||| ||||||||| || || |
Sbjct: 115399 acgtcaaggaggagtacgacgccgaggccgaggacgacgacgccgacaacgtcgaggagt 115340

                                                     
Query: 318    ccgacggggacgatttcgaccaagaaaccggctgagccg 356
              ||||||| ||||| |||||||| || |||||||||||||
Sbjct: 115339 ccgacggagacgacttcgaccaggagaccggctgagccg 115301



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>emb|CR925725.10| Zebrafish DNA sequence from clone DKEYP-1D6 in linkage group 10,
             complete sequence
          Length = 171074

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 207   cgatccgcaagaccaacagcaa 228
             ||||||||||||||||||||||
Sbjct: 76766 cgatccgcaagaccaacagcaa 76745



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>gb|AF223462.1|AF223462 Synechococcus PCC7918 CpcB (cpcB) and CpcA (cpcA) genes, partial
           cds
          Length = 465

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  ggccgtcgccgccgctgattcc 114
           ||||||||||||||||||||||
Sbjct: 331 ggccgtcgccgccgctgattcc 352



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>gb|AF223443.1|AF223443 Synechococcus sp. PS681 CpcB (cpcB) and CpcA (cpcA) genes, partial
           cds
          Length = 470

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  ggccgtcgccgccgctgattcc 114
           ||||||||||||||||||||||
Sbjct: 300 ggccgtcgccgccgctgattcc 321



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>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0008E07, complete sequence
          Length = 146679

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     gccgtcgccgccgctgattcc 114
              |||||||||||||||||||||
Sbjct: 103849 gccgtcgccgccgctgattcc 103829



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>ref|XM_753397.1| Ustilago maydis 521 hypothetical protein (UM02343.1) partial mRNA
          Length = 2229

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 280  ggaggtggaagaggacgacgtcgac 304
            |||||||||||||||||||| ||||
Sbjct: 2190 ggaggtggaagaggacgacgacgac 2214



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>gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complete sequence
          Length = 211680

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 354    ccgtccggctcccccaggctc 374
              |||||||||||||||||||||
Sbjct: 198533 ccgtccggctcccccaggctc 198553



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>emb|CR643565.2|CNS0EVJN Tetraodon nigroviridis full-length cDNA
          Length = 1279

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 196 caagctgaacgcgatccgcaa 216
           |||||||||||||||||||||
Sbjct: 262 caagctgaacgcgatccgcaa 282



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>emb|CR635850.1|CNS0EPLC Tetraodon nigroviridis full-length cDNA
          Length = 1276

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 196 caagctgaacgcgatccgcaa 216
           |||||||||||||||||||||
Sbjct: 268 caagctgaacgcgatccgcaa 288



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>gb|AC090824.6| Homo sapiens chromosome 17, clone CTD-2532B14, complete sequence
          Length = 187161

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 374   ccagtcccaatatgttggcct 394
             |||||||||||||||||||||
Sbjct: 63394 ccagtcccaatatgttggcct 63414



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>gb|AC025505.11| Homo sapiens, clone RP11-651N3, complete sequence
          Length = 166426

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   ccagtcccaatatgttggcct 394
             |||||||||||||||||||||
Sbjct: 58395 ccagtcccaatatgttggcct 58375



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>gb|AF223465.1|AF223465 Synechococcus PCC9005 CpcB (cpcB) and CpcA (cpcA) genes, partial
           cds
          Length = 468

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 94  gccgtcgccgccgctgattcc 114
           |||||||||||||||||||||
Sbjct: 341 gccgtcgccgccgctgattcc 361



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>gb|AF223455.1|AF223455 Synechococcus sp. PS685 CpcB (cpcB) and CpcA (cpcA) genes, partial
           cds
          Length = 402

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 94  gccgtcgccgccgctgattcc 114
           |||||||||||||||||||||
Sbjct: 293 gccgtcgccgccgctgattcc 313



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>gb|AF223428.1|AF223428 Synechococcus sp. PS680 CpcB (cpcB) and CpcA (cpcA) genes, partial
           cds
          Length = 514

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 94  gccgtcgccgccgctgattcc 114
           |||||||||||||||||||||
Sbjct: 339 gccgtcgccgccgctgattcc 359



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 94       gccgtcgccgccgctgattcc 114
                |||||||||||||||||||||
Sbjct: 12336371 gccgtcgccgccgctgattcc 12336351



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>gb|U76895.1|TAU76895 Triticum aestivum beta-tubulin 4 (Tubb4) mRNA, complete cds
          Length = 1866

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 266  gaggagtacgacgcggaggtggaagagga 294
            ||||||||||||| ||||| |||||||||
Sbjct: 1381 gaggagtacgacgaggaggaggaagagga 1409



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>gb|L27212.1|HSBBICP Bovine herpesvirus type 1 transrepressor protein (BICP22) gene,
            complete cds
          Length = 3210

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 273  acgacgcggaggtggaagaggacg 296
            |||||| |||||||||||||||||
Sbjct: 2392 acgacgaggaggtggaagaggacg 2369



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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 75      cggcgctgatgcggcagtggccgtcgccgccg 106
               |||||| ||| |||| ||||||||||||||||
Sbjct: 4150098 cggcgccgatccggctgtggccgtcgccgccg 4150129



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>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 273    acgacgcggaggtggaagaggacg 296
              |||||| |||||||||||||||||
Sbjct: 124802 acgacgaggaggtggaagaggacg 124825



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 273    acgacgcggaggtggaagaggacg 296
              |||||| |||||||||||||||||
Sbjct: 113416 acgacgaggaggtggaagaggacg 113393



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>emb|X76943.1|BHVBICP22 Bovine herpesvirus type 1 BICP22 gene
          Length = 3210

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 273  acgacgcggaggtggaagaggacg 296
            |||||| |||||||||||||||||
Sbjct: 2392 acgacgaggaggtggaagaggacg 2369



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>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13
          Length = 349606

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 75     cggcgctgatgcggcagtggccgtcgccgccg 106
              |||||| ||| |||| ||||||||||||||||
Sbjct: 340608 cggcgccgatccggctgtggccgtcgccgccg 340639



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>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             14/14
          Length = 278492

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 75    cggcgctgatgcggcagtggccgtcgccgccg 106
             |||||| ||| |||| ||||||||||||||||
Sbjct: 28244 cggcgccgatccggctgtggccgtcgccgccg 28275



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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     ttctgcaaagcaatctgtac 414
               ||||||||||||||||||||
Sbjct: 1215468 ttctgcaaagcaatctgtac 1215487



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>gb|AC016134.7| Homo sapiens chromosome 15 clone RP11-380D11 map 15q14, complete
             sequence
          Length = 170695

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    gccgtcgccgccgctgattc 113
             ||||||||||||||||||||
Sbjct: 54790 gccgtcgccgccgctgattc 54771



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 199     gctgaacgcgatccgcaaga 218
               ||||||||||||||||||||
Sbjct: 1452314 gctgaacgcgatccgcaaga 1452333



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>gb|AC155819.2| Mus musculus BAC clone RP23-402F16 from chromosome 12, complete
             sequence
          Length = 201181

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ttggtggagaggagatgctg 67
             ||||||||||||||||||||
Sbjct: 44188 ttggtggagaggagatgctg 44169



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 306     acgttgacgaatccgacggg 325
               ||||||||||||||||||||
Sbjct: 2532838 acgttgacgaatccgacggg 2532819



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>gb|AC155808.2| Mus musculus BAC clone RP24-267H3 from 12, complete sequence
          Length = 184888

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ttggtggagaggagatgctg 67
             ||||||||||||||||||||
Sbjct: 24546 ttggtggagaggagatgctg 24565



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>gb|AC140301.3| Mus musculus BAC clone RP23-435M8 from 5, complete sequence
          Length = 197633

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 471    caagctatcatactttactttgct 494
              |||||||||||||| |||||||||
Sbjct: 112042 caagctatcatactctactttgct 112065



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>dbj|AB209431.1| Homo sapiens mRNA for TYRO3 protein tyrosine kinase variant protein
          Length = 3059

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  gccgtcgccgccgctgattc 113
           ||||||||||||||||||||
Sbjct: 20  gccgtcgccgccgctgattc 1


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,336,821
Number of Sequences: 3902068
Number of extensions: 4336821
Number of successful extensions: 96403
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95819
Number of HSP's gapped (non-prelim): 583
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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