ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62m12 |
|---|---|
| Clone Library Name | barley_pub |
>CADA2_LISMO (Q60048) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium| efflux ATPase) Length = 711 Score = 36.2 bits (82), Expect = 0.092 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +1 Query: 181 LDCDGCERRVRNAVKSIRGVTTVVVNRKINKVTVTGYVEPRKV 309 L C C + VK I GVT +VN +K+TVTG ++V Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQV 54
>PSBB_ANASP (P20093) Photosystem II P680 chlorophyll A apoprotein (CP-47| protein) Length = 509 Score = 34.3 bits (77), Expect = 0.35 Identities = 23/75 (30%), Positives = 34/75 (45%) Frame = +1 Query: 301 RKVLARVKRTGKTTADMWPYVPYSVATYPYVGGSYDKKAPAGLVRNVPQAMADPAAPEVK 480 R+V + V + G + ++ W +P +A Y YVG S A GL R P D A + Sbjct: 286 RRVQSSVAQ-GASLSEAWSQIPEKLAFYDYVGNS---PAKGGLFRTGPMVKGDGIAQSWQ 341 Query: 481 YMNMFNDEDVNACTV 525 +F D + TV Sbjct: 342 GHGVFKDAEGRELTV 356
>YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P11E10.02c| precursor Length = 1082 Score = 33.9 bits (76), Expect = 0.46 Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 11/137 (8%) Frame = -1 Query: 527 MTVQALTSSSLNMFM------YLTSGAAGSAMACGTLRTSPAGAFLS*EP-PT*G*VATE 369 +T Q ++S+ + F+ Y TSG+ G T S G L P P+ Sbjct: 630 LTSQQISSNKSSEFVGQTTTEYTTSGSVGFTTTLATQSGSVPGTVLVDVPTPSWITETVT 689 Query: 368 *GTYGHISAVVFPVRFTLASTLRGSTYPVTVTLLI----LRFTTTVVTPRIDLTAFLTLL 201 G+ G + + P+ T + L P VT + + FTTT+ TP I TA L+ Sbjct: 690 SGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSIGFTTTIATP-IGSTAGTVLV 748 Query: 200 SQPSQSSFTLMFTVVSG 150 P+ S T TV SG Sbjct: 749 DVPTPSWVT--ETVTSG 763 Score = 32.7 bits (73), Expect = 1.0 Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Frame = -1 Query: 479 LTSGAAGSAMACGTLRTSPAGAFLS*EP-PT*G*VATE*GTYGHISAVVFPVRFTLASTL 303 +TSG+ G T + AG L P P+ G+ G + + PV T + L Sbjct: 940 VTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVL 999 Query: 302 RGSTYPVTVTLLI----LRFTTTVVTPRIDLTAFLTLLSQPSQSSFTLMFTVVSG 150 P VT + + FTTT+ TP I TA L+ P Q + T T G Sbjct: 1000 VDIPTPSWVTETVTSGSVGFTTTIATP-IGTTAGTVLVDIPQQHATTTTTTTFDG 1053 Score = 31.6 bits (70), Expect = 2.3 Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Frame = -1 Query: 479 LTSGAAGSAMACGTLRTSPAGAFLS*EP-PT*G*VATE*GTYGHISAVVFPVRFTLASTL 303 +TSG+ G T S AG L P P+ G+ G + + PV T + L Sbjct: 868 VTSGSVGFTTTIATPIGSTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVL 927 Query: 302 RGSTYPVTVTLLI----LRFTTTVVTPRIDLTAFLTLLSQPSQSSFTLMFTVVSG 150 P VT + + FTTT+ TP I TA L+ P+ S T TV SG Sbjct: 928 VDIPTPSWVTETVTSGSVGFTTTIATP-IGTTAGTVLVDIPTPSWVT--ETVTSG 979 Score = 30.8 bits (68), Expect = 3.9 Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Frame = -1 Query: 479 LTSGAAGSAMACGTLRTSPAGAFLS*EP-PT*G*VATE*GTYGHISAVVFPVRFTLASTL 303 +TSG+ G T S AG L P P+ G+ G + + P+ T + L Sbjct: 724 VTSGSIGFTTTIATPIGSTAGTVLVDVPTPSWVTETVTSGSVGFTTTIATPIGSTAGTVL 783 Query: 302 RGSTYPVTVTLLI----LRFTTTVVTPRIDLTAFLTLLSQPSQSSFTLMFTVVSG 150 P VT + + FTTT+ TP + TA L+ P+ S T TV SG Sbjct: 784 VDIPTPSWVTETVTSGSVGFTTTIATP-VGTTAGTVLVDIPTPSWVT--ETVTSG 835
>VF05_VACCP (Q00320) 36 kDa major membrane protein precursor| Length = 321 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/80 (28%), Positives = 32/80 (40%) Frame = +1 Query: 157 TTVNIKVKLDCDGCERRVRNAVKSIRGVTTVVVNRKINKVTVTGYVEPRKVLARVKRTGK 336 TT+NI VK + RVR R V + +I + G P ++ Sbjct: 105 TTMNISVKANIVDLTGRVRYLT---RNYCEVKIRCEITSFALNGSTTPPHMILG------ 155 Query: 337 TTADMWPYVPYSVATYPYVG 396 T D W Y+P+ Y YVG Sbjct: 156 -TVDKWKYLPFPTDDYRYVG 174
>VF05_VACCC (P21014) 36 kDa major membrane protein precursor| Length = 321 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/80 (28%), Positives = 32/80 (40%) Frame = +1 Query: 157 TTVNIKVKLDCDGCERRVRNAVKSIRGVTTVVVNRKINKVTVTGYVEPRKVLARVKRTGK 336 TT+NI VK + RVR R V + +I + G P ++ Sbjct: 105 TTMNISVKANIIDLTGRVRYLT---RNYCEVKIRCEITSFALNGSTTPPHMILG------ 155 Query: 337 TTADMWPYVPYSVATYPYVG 396 T D W Y+P+ Y YVG Sbjct: 156 -TVDKWKYLPFPTDDYRYVG 174
>VF05_VACCV (P24358) 36 kDa major membrane protein precursor| Length = 322 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/80 (28%), Positives = 32/80 (40%) Frame = +1 Query: 157 TTVNIKVKLDCDGCERRVRNAVKSIRGVTTVVVNRKINKVTVTGYVEPRKVLARVKRTGK 336 TT+NI VK + RVR R V + +I + G P ++ Sbjct: 105 TTMNISVKANIIDLTGRVRYLT---RNYCEVKIRCEITSFALNGSTTPPHMILG------ 155 Query: 337 TTADMWPYVPYSVATYPYVG 396 T D W Y+P+ Y YVG Sbjct: 156 -TVDKWKYLPFPTDDYRYVG 174
>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)| Length = 428 Score = 31.2 bits (69), Expect = 3.0 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Frame = -3 Query: 330 GALHPRQ-HLARLHVPRHRHLVDLAIHHHRRHTPNRFDGVPDPPLAAITVQLHLDVHRRQ 154 G LHP H A H H H A HHH H P + P PP + H Sbjct: 134 GHLHPHHPHHAHHHHHHHHH----AAHHHHHHHPPQ---PPPPPPPHMVPYFHQQPAPAP 186 Query: 153 WPPFL 139 PP L Sbjct: 187 QPPHL 191
>GBRA3_HUMAN (P34903) Gamma-aminobutyric-acid receptor alpha-3 subunit precursor| (GABA(A) receptor) Length = 492 Score = 30.8 bits (68), Expect = 3.9 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Frame = -1 Query: 488 FMYLTSGAAGSAMACGTLRTSPAGAFLS*EPPT*G*VATE*GTYGHISAV------VFPV 327 F ++ GAA SA + T+ SP ++ P TE TY +S V +FPV Sbjct: 413 FSTISKGAAPSASSTPTIIASPKATYVQDSP-------TETKTYNSVSKVDKISRIIFPV 465 Query: 326 RFTLASTLRGSTY 288 F + + + +TY Sbjct: 466 LFAIFNLVYWATY 478
>ATZN_ECOLI (P37617) Lead, cadmium, zinc and mercury-transporting ATPase (EC| 3.6.3.3) (EC 3.6.3.5) Length = 732 Score = 30.8 bits (68), Expect = 3.9 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 181 LDCDGCERRVRNAVKSIRGVTTVVVNRKINKVTV 282 +DC C R+V NAV+ + GV V V K+ V Sbjct: 57 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVV 90
>VF05_VARV (P33865) 36 kDa major membrane protein precursor| Length = 322 Score = 30.0 bits (66), Expect = 6.6 Identities = 22/80 (27%), Positives = 32/80 (40%) Frame = +1 Query: 157 TTVNIKVKLDCDGCERRVRNAVKSIRGVTTVVVNRKINKVTVTGYVEPRKVLARVKRTGK 336 TT+NI VK + RV R V + +I + G + P ++ Sbjct: 105 TTMNISVKANIIDLTGRVCYLT---RNYCEVKIRCEIKSFALNGSITPLHMILG------ 155 Query: 337 TTADMWPYVPYSVATYPYVG 396 T D W Y+P+ Y YVG Sbjct: 156 -TLDRWKYLPFPTDDYRYVG 174
>SYI_EHRRG (Q5FH91) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1118 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = +1 Query: 88 HLSRLCNLTHTREAIRIKKRRPLTTVNIKVKLDCDGCERRVRNAVKSIRGVTTVVVNRKI 267 HLS L N+ H I +K +K+ ++ GC V SIR V + V + + Sbjct: 846 HLSLLPNIEH----ITLKDEDQKNIQYMKLIINICGC-------VLSIRNVRNIRVRQPL 894 Query: 268 NKVTVTGY 291 NK+T+ Y Sbjct: 895 NKITIYSY 902
>ATZN_SYNY3 (Q59998) Zinc-transporting ATPase (EC 3.6.3.5)| (Zn(2+)-translocating P-type ATPase) Length = 721 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +1 Query: 151 PLTTVNIKVK-LDCDGCERRVRNAVKSIRGVTTVVVNRKINKVTVTGYVEPRKV 309 PL T ++V +DC C+ ++ +++ ++GV V ++TVT +P++V Sbjct: 6 PLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQV 57
>ATCU_YERPE (Q8ZCA7) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 961 Score = 29.6 bits (65), Expect = 8.7 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +1 Query: 157 TTVNIKVKLDCDGCERRVRNAVKSIRGVTTVVVNRKINKVTVTGYVEPRKVLARVKRTG 333 TT+ L C C +RV+ A++S V VN ++ VTG + ++ +K+TG Sbjct: 4 TTLLALQGLSCMNCAQRVKAALESREDVHHAEVN--VHYAKVTGEADTHALIETIKQTG 60
>SYI_EHRRW (Q5HB43) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1117 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = +1 Query: 88 HLSRLCNLTHTREAIRIKKRRPLTTVNIKVKLDCDGCERRVRNAVKSIRGVTTVVVNRKI 267 HLS L N+ H I +K +K+ ++ GC V SIR V + V + + Sbjct: 846 HLSLLPNIEH----ITLKDEDQKNIQYMKLIINICGC-------VLSIRNVRNIRVRQPL 894 Query: 268 NKVTVTGY 291 NK+T+ Y Sbjct: 895 NKITIYSY 902
>KPYK_BACST (Q02499) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 587 Score = 29.6 bits (65), Expect = 8.7 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = +1 Query: 322 KRTGKTTADMWPYVPYSVATYPYVGGSYDKKAPAGLVRNVPQAMADPAAPEVKYMNMFND 501 KRTG+T A + + T+ G+ + K + LV ++ + + P V Y ++ +D Sbjct: 56 KRTGRTVAILLDTKGPEIRTHNMENGAIELKEGSKLVISMSEVLGTPEKISVTYPSLIDD 115 Query: 502 EDVNA 516 V A Sbjct: 116 VSVGA 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,300,348 Number of Sequences: 219361 Number of extensions: 1731152 Number of successful extensions: 5456 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5429 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
