Clone Name | bah62m12 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ549119.1|HVU549119 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 3 (fp3 gene) Length = 650 Score = 369 bits (186), Expect = 8e-99 Identities = 392/460 (85%), Gaps = 3/460 (0%) Strand = Plus / Plus Query: 73 atgggcgccttggatcacctctcccgtctctgcaacttgacacacacaagggaagccatc 132 ||||||||||||||||||||||| | | |||| | |||| | |||| |||| || || Sbjct: 1 atgggcgccttggatcacctctctgatttgtgcagcatgacggagacaaaggaatccctc 60 Query: 133 aggatcaagaaaaggcggccactgacgacggtgaacatcaaggtgaagctggactgtgat 192 | | ||| ||| | |||||||| | |||||||||||||||||||||| |||| || || Sbjct: 61 aagctcaggaagaagcggccacagcagacggtgaacatcaaggtgaagatggattgcgag 120 Query: 193 ggctgcgagaggagggtcaggaacgccgtcaaatcgattcggggtgtgacgacggtggtg 252 |||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| Sbjct: 121 ggctgcgagaggagagtcaagaacgccgtcaaatcgattcggggtgtgacgagcgtggcc 180 Query: 253 gtgaatcgcaagatcaacaaggtgacggtgacggggtacgtggagcctcgcaaggtgctg 312 ||||| | |||||| | ||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 181 gtgaaccccaagatgagcaaggtgacggtgacggggcacgtggagccgcgcaaggtgctg 240 Query: 313 gcgagggtgaagcgcaccgggaagacgacggcggatatgtggccgtacgtgccctactcg 372 | | |||||||| |||||||||| | ||||||| |||||||||||||| |||||| || Sbjct: 241 gagcgggtgaagagcaccgggaa---ggcggcggagatgtggccgtacgtcccctacacg 297 Query: 373 gtggccacctacccctacgttggcggctcctacgacaagaaggcgccggcgggactggtc 432 | ||||||||||||||||| ||||| |||||||||||||||| |||||||| | ||| Sbjct: 298 ctcgccacctacccctacgtcggcggtgcctacgacaagaaggcaccggcgggcttcgtc 357 Query: 433 cgcaacgtgccgcaggccatggctgacccggccgcgccggaggtcaagtacatgaacatg 492 |||| || |||||||||||||| ||||| || ||||| ||| || | |||||||||||| Sbjct: 358 cgcagcgcaccgcaggccatggccgaccccgcggcgcctgagatccactacatgaacatg 417 Query: 493 ttcaacgacgaggacgttaacgcttgcaccgtcatgtgat 532 ||||||||||||||||| ||||| |||||||||||||||| Sbjct: 418 ttcaacgacgaggacgtcaacgcctgcaccgtcatgtgat 457
>emb|AJ549118.1|HVU549118 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 2 (fp2 gene) Length = 668 Score = 353 bits (178), Expect = 5e-94 Identities = 390/460 (84%), Gaps = 3/460 (0%) Strand = Plus / Plus Query: 73 atgggcgccttggatcacctctcccgtctctgcaacttgacacacacaagggaagccatc 132 ||||||| |||||||||||||||| | | |||| | ||||| |||||| || |||| || Sbjct: 1 atgggcgtcttggatcacctctccgatttgtgcagcatgacagacacaaaggcagccctc 60 Query: 133 aggatcaagaaaaggcggccactgacgacggtgaacatcaaggtgaagctggactgtgat 192 | | ||| ||| |||||||||||| |||||| ||||||||||||||| |||||||||| Sbjct: 61 aagctcaggaagaggcggccactgcagacggtaaacatcaaggtgaagatggactgtgag 120 Query: 193 ggctgcgagaggagggtcaggaacgccgtcaaatcgattcggggtgtgacgacggtggtg 252 ||||||||||| | ||||| |||||||||||| |||||||||||||||||| | ||| Sbjct: 121 ggctgcgagagaaaggtcaagaacgccgtcaagtcgattcggggtgtgacggccgtgtca 180 Query: 253 gtgaatcgcaagatcaacaaggtgacggtgacggggtacgtggagcctcgcaaggtgctg 312 ||||| | |||||| | |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 181 gtgaaccccaagatgagcaaggtgacggtgacggggttcgtggagccgagcaaggtgctg 240 Query: 313 gcgagggtgaagcgcaccgggaagacgacggcggatatgtggccgtacgtgccctactcg 372 ||| |||||||| |||||||||| | ||| || |||||||| |||||||| |||||| Sbjct: 241 gcgcgggtgaagagcaccgggaa---ggtggccgagatgtggccctacgtgccatactcg 297 Query: 373 gtggccacctacccctacgttggcggctcctacgacaagaaggcgccggcgggactggtc 432 | |||||||||||||||| |||||| ||||||||||||||||||||||||| | ||| Sbjct: 298 ctcaccacctacccctacgtcggcggcgcctacgacaagaaggcgccggcgggcttcgtc 357 Query: 433 cgcaacgtgccgcaggccatggctgacccggccgcgccggaggtcaagtacatgaacatg 492 ||| || ||||||||||||||| || || | |||||||||||| ||||||||||||| Sbjct: 358 cgcggcgcgccgcaggccatggccgatccaggggcgccggaggtccggtacatgaacatg 417 Query: 493 ttcaacgacgaggacgttaacgcttgcaccgtcatgtgat 532 ||| ||||||||||||| ||| | |||||| ||||||||| Sbjct: 418 ttcgacgacgaggacgtgaactcctgcaccatcatgtgat 457
>gb|AY108632.1| Zea mays PCO084337 mRNA sequence Length = 798 Score = 161 bits (81), Expect = 4e-36 Identities = 214/256 (83%), Gaps = 3/256 (1%) Strand = Plus / Plus Query: 277 acggtgacggggtacgtggagcctcgcaaggtgctggcgagggtgaagcgcaccgggaag 336 |||||||| |||||||||||||| ||||||||||| | | || ||| |||||| ||| Sbjct: 398 acggtgaccgggtacgtggagcccgccaaggtgctggagcgcgtcaaggccaccggcaag 457 Query: 337 acgacggcggatatgtggccgtacgtgccctactcggtggccacctacccctacgttggc 396 | ||| || | |||||||| |||||||||||| || | |||||||||||||||| ||| Sbjct: 458 a--acgccg-agatgtggccctacgtgccctacacgctcaccacctacccctacgtcggc 514 Query: 397 ggctcctacgacaagaaggcgccggcgggactggtccgcaacgtgccgcaggccatggct 456 ||| |||||||||||||||| || ||||| | ||||||| || ||||||||||||||| Sbjct: 515 ggcgcctacgacaagaaggctcccgcgggcttcgtccgcagcgcgccgcaggccatggca 574 Query: 457 gacccggccgcgccggaggtcaagtacatgaacatgttcaacgacgaggacgttaacgct 516 ||||| ||| |||||||||||||||||| |||||||| ||||||| |||| ||||| Sbjct: 575 gaccccagcgctccggaggtcaagtacatgtccatgttcagcgacgagaacgtcaacgcc 634 Query: 517 tgcaccgtcatgtgat 532 |||||| ||||||||| Sbjct: 635 tgcaccatcatgtgat 650 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 159 gacggtgaacatcaaggtgaagctggactgtgatggctgcgag 201 |||||||||||||||||||||| ||||||| || || |||||| Sbjct: 280 gacggtgaacatcaaggtgaagatggactgcgaaggttgcgag 322
>ref|NM_193727.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 456 Score = 91.7 bits (46), Expect = 3e-15 Identities = 117/140 (83%), Gaps = 3/140 (2%) Strand = Plus / Plus Query: 277 acggtgacggggtacgtggagcctcgcaaggtgctggcgagggtgaagcgcaccgggaag 336 |||||||| |||||||||||| | |||||||||||| | | |||||| ||||||||||| Sbjct: 205 acggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagcaccgggaag 264 Query: 337 acgacggcggatatgtggccgtacgtgccctactcggtggccacctacccctacgttggc 396 || ||||| |||||||| ||||| || ||| | || |||||||||| ||||| ||| Sbjct: 265 gcg---gcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacgtcggc 321 Query: 397 ggctcctacgacaagaaggc 416 ||| |||||||||||||||| Sbjct: 322 ggcgcctacgacaagaaggc 341 Score = 85.7 bits (43), Expect = 2e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 147 gcggccactgacgacggtgaacatcaaggtgaagctggactgtgatggctgcgagaggag 206 |||||||||| |||||||||||||||||||||| ||||||| || || ||||||||||| Sbjct: 75 gcggccactgcagacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggag 134 Query: 207 ggtcaggaacgccgtcaaatcgattcggggtgtgacgacggtggtggtgaa 257 ||| | |||||| || || ||||| || || ||||||| |||| |||||| Sbjct: 135 ggtgaagaacgcggtgaagtcgatgcgaggggtgacgagcgtggcggtgaa 185
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 3e-15 Identities = 117/140 (83%), Gaps = 3/140 (2%) Strand = Plus / Plus Query: 277 acggtgacggggtacgtggagcctcgcaaggtgctggcgagggtgaagcgcaccgggaag 336 |||||||| |||||||||||| | |||||||||||| | | |||||| ||||||||||| Sbjct: 17737690 acggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagcaccgggaag 17737749 Query: 337 acgacggcggatatgtggccgtacgtgccctactcggtggccacctacccctacgttggc 396 || ||||| |||||||| ||||| || ||| | || |||||||||| ||||| ||| Sbjct: 17737750 gcg---gcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacgtcggc 17737806 Query: 397 ggctcctacgacaagaaggc 416 ||| |||||||||||||||| Sbjct: 17737807 ggcgcctacgacaagaaggc 17737826 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 159 gacggtgaacatcaaggtgaagctggactgtgatggctgcgagaggagggtcaggaacgc 218 |||||||||||||||||||||| ||||||| || || |||||||||||||| | |||||| Sbjct: 17737572 gacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggagggtgaagaacgc 17737631 Query: 219 cgtcaaatcgattcggggtgtgacgacggtggtggtgaa 257 || || ||||| || || ||||||| |||| |||||| Sbjct: 17737632 ggtgaagtcgatgcgaggggtgacgagcgtggcggtgaa 17737670
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0094H06 Length = 147245 Score = 91.7 bits (46), Expect = 3e-15 Identities = 117/140 (83%), Gaps = 3/140 (2%) Strand = Plus / Plus Query: 277 acggtgacggggtacgtggagcctcgcaaggtgctggcgagggtgaagcgcaccgggaag 336 |||||||| |||||||||||| | |||||||||||| | | |||||| ||||||||||| Sbjct: 119225 acggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagcaccgggaag 119284 Query: 337 acgacggcggatatgtggccgtacgtgccctactcggtggccacctacccctacgttggc 396 || ||||| |||||||| ||||| || ||| | || |||||||||| ||||| ||| Sbjct: 119285 gcg---gcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacgtcggc 119341 Query: 397 ggctcctacgacaagaaggc 416 ||| |||||||||||||||| Sbjct: 119342 ggcgcctacgacaagaaggc 119361 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 159 gacggtgaacatcaaggtgaagctggactgtgatggctgcgagaggagggtcaggaacgc 218 |||||||||||||||||||||| ||||||| || || |||||||||||||| | |||||| Sbjct: 119107 gacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggagggtgaagaacgc 119166 Query: 219 cgtcaaatcgattcggggtgtgacgacggtggtggtgaa 257 || || ||||| || || ||||||| |||| |||||| Sbjct: 119167 ggtgaagtcgatgcgaggggtgacgagcgtggcggtgaa 119205
>dbj|AK060145.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-A06, full insert sequence Length = 1027 Score = 91.7 bits (46), Expect = 3e-15 Identities = 117/140 (83%), Gaps = 3/140 (2%) Strand = Plus / Plus Query: 277 acggtgacggggtacgtggagcctcgcaaggtgctggcgagggtgaagcgcaccgggaag 336 |||||||| |||||||||||| | |||||||||||| | | |||||| ||||||||||| Sbjct: 354 acggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagcaccgggaag 413 Query: 337 acgacggcggatatgtggccgtacgtgccctactcggtggccacctacccctacgttggc 396 || ||||| |||||||| ||||| || ||| | || |||||||||| ||||| ||| Sbjct: 414 gcg---gcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacgtcggc 470 Query: 397 ggctcctacgacaagaaggc 416 ||| |||||||||||||||| Sbjct: 471 ggcgcctacgacaagaaggc 490 Score = 85.7 bits (43), Expect = 2e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 147 gcggccactgacgacggtgaacatcaaggtgaagctggactgtgatggctgcgagaggag 206 |||||||||| |||||||||||||||||||||| ||||||| || || ||||||||||| Sbjct: 224 gcggccactgcagacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggag 283 Query: 207 ggtcaggaacgccgtcaaatcgattcggggtgtgacgacggtggtggtgaa 257 ||| | |||||| || || ||||| || || ||||||| |||| |||||| Sbjct: 284 ggtgaagaacgcggtgaagtcgatgcgaggggtgacgagcgtggcggtgaa 334
>ref|XM_471278.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 268 aacaaggtgacggtgacggggtacgtgga 296 ||||||||||||||||||||||||||||| Sbjct: 190 aacaaggtgacggtgacggggtacgtgga 218
>gb|BT009077.1| Triticum aestivum clone wip1c.pk005.e10:fis, full insert mRNA sequence Length = 961 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 268 aacaaggtgacggtgacggggtacgtgga 296 ||||||||||||||||||||||||||||| Sbjct: 306 aacaaggtgacggtgacggggtacgtgga 334
>emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C12, complete sequence Length = 138715 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 268 aacaaggtgacggtgacggggtacgtgga 296 ||||||||||||||||||||||||||||| Sbjct: 18534 aacaaggtgacggtgacggggtacgtgga 18506
>emb|AJ508227.1|HVU508227 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 1 Length = 991 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 268 aacaaggtgacggtgacggggtacgtgga 296 ||||||||||||||||||||||||||||| Sbjct: 309 aacaaggtgacggtgacggggtacgtgga 337
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 268 aacaaggtgacggtgacggggtacgtgga 296 ||||||||||||||||||||||||||||| Sbjct: 9420413 aacaaggtgacggtgacggggtacgtgga 9420385 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 aacaaggtgacggtgacggg 287 |||||||||||||||||||| Sbjct: 25035523 aacaaggtgacggtgacggg 25035504 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 23883426 tgcatgcatgtacggtgctg 23883445 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 3282234 tgcatgcatgtacggtgctg 3282253 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 3276940 tgcatgcatgtacggtgctg 3276959
>dbj|AK121488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150J09, full insert sequence Length = 803 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 268 aacaaggtgacggtgacggggtacgtgga 296 ||||||||||||||||||||||||||||| Sbjct: 330 aacaaggtgacggtgacggggtacgtgga 358
>ref|NM_187568.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 582 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtggag 297 ||||||||||||||||||||||||||| Sbjct: 301 aaggtgacggtgacggggtacgtggag 327
>ref|XM_470243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 268 aacaaggtgacggtgacggggtacgtggagc 298 |||||||||||||||||||| |||||||||| Sbjct: 190 aacaaggtgacggtgacgggttacgtggagc 220
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 268 aacaaggtgacggtgacggggtacgtggagc 298 |||||||||||||||||||| |||||||||| Sbjct: 3029020 aacaaggtgacggtgacgggttacgtggagc 3028990 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 271 aaggtgacggtgacggggtacgtggag 297 ||||||||||||||||||||||||||| Sbjct: 1105288 aaggtgacggtgacggggtacgtggag 1105262 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtggagcctcgcaaggtgctg 312 ||||||||||||| |||||||||||| | ||||||||||| Sbjct: 15063193 aaggtgacggtgagcgggtacgtggaggccagcaaggtgctg 15063234
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 271 aaggtgacggtgacggggtacgtggag 297 ||||||||||||||||||||||||||| Sbjct: 8992 aaggtgacggtgacggggtacgtggag 8966
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 268 aacaaggtgacggtgacggggtacgtggagc 298 |||||||||||||||||||| |||||||||| Sbjct: 67241 aacaaggtgacggtgacgggttacgtggagc 67271
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 268 aacaaggtgacggtgacggggtacgtggagc 298 |||||||||||||||||||| |||||||||| Sbjct: 3029131 aacaaggtgacggtgacgggttacgtggagc 3029101 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 271 aaggtgacggtgacggggtacgtggag 297 ||||||||||||||||||||||||||| Sbjct: 1105286 aaggtgacggtgacggggtacgtggag 1105260 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtggagcctcgcaaggtgctg 312 ||||||||||||| |||||||||||| | ||||||||||| Sbjct: 15057727 aaggtgacggtgagcgggtacgtggaggccagcaaggtgctg 15057768
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 271 aaggtgacggtgacggggtacgtggag 297 ||||||||||||||||||||||||||| Sbjct: 125503 aaggtgacggtgacggggtacgtggag 125477
>dbj|AK105367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G06, full insert sequence Length = 822 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 268 aacaaggtgacggtgacggggtacgtggagc 298 |||||||||||||||||||| |||||||||| Sbjct: 269 aacaaggtgacggtgacgggttacgtggagc 299
>dbj|AK070517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056A13, full insert sequence Length = 1131 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtggag 297 ||||||||||||||||||||||||||| Sbjct: 510 aaggtgacggtgacggggtacgtggag 536
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtgga 296 |||||||||||||||||||||||||| Sbjct: 27978684 aaggtgacggtgacggggtacgtgga 27978709
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtgga 296 |||||||||||||||||||||||||| Sbjct: 22346 aaggtgacggtgacggggtacgtgga 22371
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtgga 296 |||||||||||||||||||||||||| Sbjct: 106136 aaggtgacggtgacggggtacgtgga 106161
>dbj|AK072580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023124L24, full insert sequence Length = 601 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtgga 296 |||||||||||||||||||||||||| Sbjct: 234 aaggtgacggtgacggggtacgtgga 259
>gb|AY110301.1| Zea mays CL15090_1 mRNA sequence Length = 861 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 271 aaggtgacggtgacggggtacgtgga 296 |||||||||||||||||||||||||| Sbjct: 385 aaggtgacggtgacggggtacgtgga 360
>ref|XM_415508.1| PREDICTED: Gallus gallus similar to Sh2d3c-prov protein (LOC417225), mRNA Length = 4706 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 261 caagatcaacaaggtgacggtga 283 ||||||||||||||||||||||| Sbjct: 2889 caagatcaacaaggtgacggtga 2911
>ref|NM_197549.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0040D23.10), mRNA Length = 558 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtgga 296 ||||||| |||||||||||||||||| Sbjct: 271 aaggtgagggtgacggggtacgtgga 296
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtgga 296 ||||||| |||||||||||||||||| Sbjct: 56476 aaggtgagggtgacggggtacgtgga 56501
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 271 aaggtgacggtgacggggtacgtggagcctcgcaaggtgctg 312 ||||||||||||| |||||||||||| | ||||||||||| Sbjct: 91580 aaggtgacggtgagcgggtacgtggaggccagcaaggtgctg 91539
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtgga 296 ||||||| |||||||||||||||||| Sbjct: 20416328 aaggtgagggtgacggggtacgtgga 20416353 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 17548235 tgcatgcatgtacggtgctg 17548216 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 17012064 tgcatgcatgtacggtgctg 17012083
>dbj|AK069713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033I19, full insert sequence Length = 949 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtggagcctcgcaaggtgctg 312 ||||||||||||| |||||||||||| | ||||||||||| Sbjct: 352 aaggtgacggtgagcgggtacgtggaggccagcaaggtgctg 393
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 271 aaggtgacggtgacggggtacgtgga 296 ||||||| |||||||||||||||||| Sbjct: 20427600 aaggtgagggtgacggggtacgtgga 20427625 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 17557275 tgcatgcatgtacggtgctg 17557256 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 17021104 tgcatgcatgtacggtgctg 17021123
>ref|XM_450636.1| Oryza sativa (japonica cultivar-group), mRNA Length = 751 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 269 acaaggtgacggtgacggggtacgtggagcctcgcaaggtg 309 |||||||||||||| ||||| ||||||||| | ||||||| Sbjct: 321 acaaggtgacggtgcaggggttcgtggagccgcacaaggtg 361
>gb|AC158542.2| Pan troglodytes BAC clone CH251-262O17 from chromosome y, complete sequence Length = 174274 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 623 gatgaacttgtgcatgcatgt 643 ||||||||||||||||||||| Sbjct: 146730 gatgaacttgtgcatgcatgt 146750
>emb|AJ567404.1|CRE567404 Citrus reticulata microsatellite DNA, clone Ci02B10 Length = 370 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 169 atcaaggtgaagctggactgtgatggctg 197 ||||||||||| |||||||||||||||| Sbjct: 186 atcaaggtgaaaatggactgtgatggctg 158
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 caacgtgccgcaggccatggc 455 ||||||||||||||||||||| Sbjct: 648629 caacgtgccgcaggccatggc 648649
>emb|X70942.1|PPPHLP5A P.pratense Phl p Va gene for major pollen allergen Phl p Va Length = 1031 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 686 ccgcgccggaggtcaagtaca 706
>emb|Z97874.1|HL5ALLERG Holcus lanatus mRNA for group V allergen Length = 984 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 620 ccgcgccggaggtcaagtaca 640
>emb|Z82986.1|PPZ82986 P.pratense mRNA for major allergen Phl p 5 (isovariant 618II8) Length = 1008 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 656 ccgcgccggaggtcaagtaca 676
>emb|X74735.1|PPHLP5 P. pratense mRNA for PhlpV Length = 1192 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 807 ccgcgccggaggtcaagtaca 827
>gb|AF325267.1| Dactylis glomerata group 5 allergen precursor, mRNA, complete cds Length = 873 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gccgcgccggaggtcaagtac 483 ||||||||||||||||||||| Sbjct: 697 gccgcgccggaggtcaagtac 717
>emb|AJ555152.1|PPR555152 Phleum pratense partial mRNA for phl p5a allergen precursor Length = 855 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 680 ccgcgccggaggtcaagtaca 700
>emb|AL929087.4| Zebrafish DNA sequence from clone CH211-226M16 in linkage group 23 Contains three novel genes and a CpG island, complete sequence Length = 205160 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 625 tgaacttgtgcatgcatgtacggtg 649 ||||||||||||||| ||||||||| Sbjct: 88955 tgaacttgtgcatgcctgtacggtg 88979
>dbj|BS000567.1| Pan troglodytes chromosome Y clone:PTFY-001J22, complete sequences Length = 31289 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 623 gatgaacttgtgcatgcatgt 643 ||||||||||||||||||||| Sbjct: 19354 gatgaacttgtgcatgcatgt 19334
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 623 gatgaacttgtgcatgcatgt 643 ||||||||||||||||||||| Sbjct: 10170112 gatgaacttgtgcatgcatgt 10170132
>gb|DP000056.1| Pan troglodytes chromosome Y chry_random_3 genomic scaffold Length = 331329 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 623 gatgaacttgtgcatgcatgt 643 ||||||||||||||||||||| Sbjct: 147475 gatgaacttgtgcatgcatgt 147495
>gb|AC164571.3| Pan troglodytes BAC clone CH251-967O8 from chromosome y, complete sequence Length = 225200 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 623 gatgaacttgtgcatgcatgt 643 ||||||||||||||||||||| Sbjct: 163227 gatgaacttgtgcatgcatgt 163247
>gb|AC034199.6| Homo sapiens chromosome 5 clone CTB-114C7, complete sequence Length = 122880 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 625 tgaacttgtgcatgcatgtac 645 ||||||||||||||||||||| Sbjct: 52904 tgaacttgtgcatgcatgtac 52924
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 269 acaaggtgacggtgacggggtacgtggagcctcgcaaggtg 309 |||||||||||||| ||||| ||||||||| | ||||||| Sbjct: 11923597 acaaggtgacggtgcaggggttcgtggagccgcacaaggtg 11923637 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 9192644 tgcatgcatgtacggtgctg 9192663 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 9184409 tgcatgcatgtacggtgctg 9184428
>gb|AC175060.2| Pan troglodytes BAC clone CH251-724O9 from chromosome y, complete sequence Length = 196548 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 623 gatgaacttgtgcatgcatgt 643 ||||||||||||||||||||| Sbjct: 4642 gatgaacttgtgcatgcatgt 4662
>gb|AC163766.3| Pan troglodytes BAC clone CH251-115P4 from chromosome y, complete sequence Length = 185225 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 623 gatgaacttgtgcatgcatgt 643 ||||||||||||||||||||| Sbjct: 61043 gatgaacttgtgcatgcatgt 61023
>gb|AC163726.3| Pan troglodytes BAC clone CH251-653B19 from chromosome y, complete sequence Length = 207364 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 623 gatgaacttgtgcatgcatgt 643 ||||||||||||||||||||| Sbjct: 23525 gatgaacttgtgcatgcatgt 23545
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 269 acaaggtgacggtgacggggtacgtggagcctcgcaaggtg 309 |||||||||||||| ||||| ||||||||| | ||||||| Sbjct: 105087 acaaggtgacggtgcaggggttcgtggagccgcacaaggtg 105127
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 269 acaaggtgacggtgacggggtacgtggagcctcgcaaggtg 309 |||||||||||||| ||||| ||||||||| | ||||||| Sbjct: 28077 acaaggtgacggtgcaggggttcgtggagccgcacaaggtg 28117
>dbj|AK068537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152L24, full insert sequence Length = 751 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 269 acaaggtgacggtgacggggtacgtggagcctcgcaaggtg 309 |||||||||||||| ||||| ||||||||| | ||||||| Sbjct: 321 acaaggtgacggtgcaggggttcgtggagccgcacaaggtg 361
>gb|AY112463.1| Zea mays CL22709_1 mRNA sequence Length = 820 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 268 aacaaggtgacggtgacggggtacgtgga 296 |||||||||||||| ||||| |||||||| Sbjct: 521 aacaaggtgacggtcacgggctacgtgga 493
>gb|AF069470.1|AF069470 Phleum pratense group V allergen Phl p 5.0103 precursor, mRNA, complete cds Length = 1165 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 776 ccgcgccggaggtcaagtaca 796
>gb|AF061069.1|AF061069 Phleum pratense clone 10030 major allergen Phl p 5 mRNA, partial cds Length = 831 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 656 ccgcgccggaggtcaagtaca 676
>gb|AF061068.1|AF061068 Phleum pratense clone 10029 major allergen Phl p 5 mRNA, partial cds Length = 831 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 656 ccgcgccggaggtcaagtaca 676
>gb|AF061067.1|AF061067 Phleum pratense clone 10027 major allergen Phl p 5 mRNA, partial cds Length = 831 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 656 ccgcgccggaggtcaagtaca 676
>gb|AF061066.1|AF061066 Phleum pratense clone 10022 major allergen Phl p 5 mRNA, partial cds Length = 831 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 656 ccgcgccggaggtcaagtaca 676
>dbj|AP006667.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT31L14, TM0366, complete sequence Length = 100936 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 169 atcaaggtgaagctggactgtgatggctg 197 ||||||||||| |||||||||||||||| Sbjct: 4436 atcaaggtgaaaatggactgtgatggctg 4464
>gb|L13083.1|LOLG9I Lolium perenne isoform 9 mRNA, complete cds Length = 1272 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ccgcgccggaggtcaagtaca 484 ||||||||||||||||||||| Sbjct: 791 ccgcgccggaggtcaagtaca 811
>ref|NM_111892.2| Arabidopsis thaliana CYP77A7; heme binding / iron ion binding / monooxygenase/ oxygen binding AT3G10560 (CYP77A7) mRNA, complete cds Length = 1812 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 535 catcatcttcactccagccactcc 558 |||||||||||||||||| ||||| Sbjct: 1390 catcatcttcactccagcaactcc 1367
>ref|XM_526397.1| PREDICTED: Pan troglodytes similar to KIAA1552 protein (LOC471013), mRNA Length = 1650 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcaaggtgctggcgagggtg 321 |||||||||||||||||||| Sbjct: 240 gcaaggtgctggcgagggtg 221
>ref|XM_473067.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 792 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 aacaaggtgacggtgacggg 287 |||||||||||||||||||| Sbjct: 295 aacaaggtgacggtgacggg 314
>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24, complete sequence Length = 150085 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 69552 tgcatgcatgtacggtgctg 69533
>ref|NM_020912.1| Homo sapiens FLYWCH-type zinc finger 1 (FLYWCH1), transcript variant 2, mRNA Length = 2555 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcaaggtgctggcgagggtg 321 |||||||||||||||||||| Sbjct: 604 gcaaggtgctggcgagggtg 585
>ref|NM_032296.2| Homo sapiens FLYWCH-type zinc finger 1 (FLYWCH1), transcript variant 1, mRNA Length = 5009 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcaaggtgctggcgagggtg 321 |||||||||||||||||||| Sbjct: 604 gcaaggtgctggcgagggtg 585
>ref|XM_539179.2| PREDICTED: Canis familiaris similar to NIK and IKK{beta} binding protein (LOC482058), mRNA Length = 3444 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aacatcaaggtgaagctgga 185 |||||||||||||||||||| Sbjct: 2371 aacatcaaggtgaagctgga 2390
>gb|AC013428.6|ATAC013428 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence Length = 93985 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 535 catcatcttcactccagccactcc 558 |||||||||||||||||| ||||| Sbjct: 58442 catcatcttcactccagcaactcc 58419
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 aacaaggtgacggtgacggg 287 |||||||||||||||||||| Sbjct: 156108 aacaaggtgacggtgacggg 156089
>gb|AC108734.10| Homo sapiens 3 BAC RP11-259P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125990 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gcaaggtgctggcgagggtg 321 |||||||||||||||||||| Sbjct: 66946 gcaaggtgctggcgagggtg 66965
>emb|AL109914.16|HSBA27F12 Human DNA sequence from clone RP11-27F12 on chromosome 6p22.3-24 Contains the 5' end of a novel gene, complete sequence Length = 123489 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 609 aaaaatggtaccaagatgaacttg 632 ||||||| |||||||||||||||| Sbjct: 6594 aaaaatgataccaagatgaacttg 6571
>gb|BC028572.1| Homo sapiens FLYWCH-type zinc finger 1, transcript variant 1, mRNA (cDNA clone MGC:26050 IMAGE:4839062), complete cds Length = 5006 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcaaggtgctggcgagggtg 321 |||||||||||||||||||| Sbjct: 605 gcaaggtgctggcgagggtg 586
>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18, complete sequence Length = 176615 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 48299 tgcatgcatgtacggtgctg 48318
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tcagatcgatcatgggcgcc 81 |||||||||||||||||||| Sbjct: 415845 tcagatcgatcatgggcgcc 415864
>gb|AC090424.18| Homo sapiens 12q BAC RP11-428I12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158472 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 tcatcttcactccagccact 556 |||||||||||||||||||| Sbjct: 116627 tcatcttcactccagccact 116608 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 tcatcttcactccagccact 556 |||||||||||||||||||| Sbjct: 116579 tcatcttcactccagccact 116560
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cggggtgtgacgacggtggt 251 |||||||||||||||||||| Sbjct: 227902 cggggtgtgacgacggtggt 227921
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 126396 tgcatgcatgtacggtgctg 126415
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gactgtgatggctgcgagag 203 |||||||||||||||||||| Sbjct: 1978097 gactgtgatggctgcgagag 1978078
>gb|AC004034.2| Homo sapiens chromosome 16 clone LA16c-321D4, complete sequence Length = 37718 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gcaaggtgctggcgagggtg 321 |||||||||||||||||||| Sbjct: 17615 gcaaggtgctggcgagggtg 17634
>emb|AL773514.4| Mouse DNA sequence from clone RP23-300H23 on chromosome 2, complete sequence Length = 88600 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 agggaagccatcaggatcaagaaa 144 |||||||||||||||||| ||||| Sbjct: 53490 agggaagccatcaggatccagaaa 53467
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 agtacatgaacatgttcaac 498 |||||||||||||||||||| Sbjct: 22816879 agtacatgaacatgttcaac 22816898
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 13113969 tgcatgcatgtacggtgctg 13113988
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 15890094 tgcatgcatgtacggtgctg 15890075
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 15334188 tgcatgcatgtacggtgctg 15334207 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 13408962 tgcatgcatgtacggtgctg 13408943
>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence Length = 118107 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 535 catcatcttcactccagccactcc 558 |||||||||||||||||| ||||| Sbjct: 46075 catcatcttcactccagcaactcc 46098
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete sequence Length = 135216 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 52556 tgcatgcatgtacggtgctg 52575
>gb|AY089027.1| Arabidopsis thaliana clone 18386 mRNA, complete sequence Length = 1812 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 535 catcatcttcactccagccactcc 558 |||||||||||||||||| ||||| Sbjct: 1389 catcatcttcactccagcaactcc 1366
>dbj|AP003952.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1294_G12 Length = 121979 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 70394 tgcatgcatgtacggtgctg 70375
>dbj|AP003506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0428A03 Length = 136799 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 20386 tgcatgcatgtacggtgctg 20367
>dbj|AP005921.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1061F01 Length = 70013 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 66710 tgcatgcatgtacggtgctg 66729
>dbj|AP005767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0035G04 Length = 155636 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 153856 tgcatgcatgtacggtgctg 153875
>dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1742_G01 Length = 154912 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 17935 tgcatgcatgtacggtgctg 17954 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 9700 tgcatgcatgtacggtgctg 9719
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0613F06 Length = 184289 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 1703 tgcatgcatgtacggtgctg 1722
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 129608 tgcatgcatgtacggtgctg 129589
>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1100F03 Length = 139217 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 tgcatgcatgtacggtgctg 652 |||||||||||||||||||| Sbjct: 94489 tgcatgcatgtacggtgctg 94508
>gb|AC102608.14| Mus musculus chromosome 3, clone RP23-402L6, complete sequence Length = 185014 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 550 agccactccatgcctagattacta 573 ||||||||||| |||||||||||| Sbjct: 88253 agccactccatccctagattacta 88276
>emb|CT010428.13| Mouse DNA sequence from clone RP23-304G18 on chromosome 13, complete sequence Length = 226457 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 gccggaggtcaagtacatga 487 |||||||||||||||||||| Sbjct: 131340 gccggaggtcaagtacatga 131359
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 agtacatgaacatgttcaac 498 |||||||||||||||||||| Sbjct: 22745070 agtacatgaacatgttcaac 22745089
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 agtacatgaacatgttcaac 498 |||||||||||||||||||| Sbjct: 139965 agtacatgaacatgttcaac 139946
>emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb0092G12 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131603 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 agtacatgaacatgttcaac 498 |||||||||||||||||||| Sbjct: 128729 agtacatgaacatgttcaac 128748
>gb|AC132304.3| Mus musculus BAC clone RP24-284M17 from 10, complete sequence Length = 191906 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ggaagccatcaggatcaaga 142 |||||||||||||||||||| Sbjct: 57164 ggaagccatcaggatcaaga 57183
>emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chromosome 2, complete sequence Length = 193797 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 caacttgacacacacaaggg 124 |||||||||||||||||||| Sbjct: 133035 caacttgacacacacaaggg 133054
>dbj|AB004829.1| Fugu rubripes gene for Notch 2, partial cds Length = 25951 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 cttgacacacacaagggaagccat 131 ||||||||||||||| |||||||| Sbjct: 13030 cttgacacacacaagtgaagccat 13007
>dbj|AB046772.1| Homo sapiens mRNA for KIAA1552 protein, partial cds Length = 4963 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcaaggtgctggcgagggtg 321 |||||||||||||||||||| Sbjct: 584 gcaaggtgctggcgagggtg 565 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,459,466 Number of Sequences: 3902068 Number of extensions: 4459466 Number of successful extensions: 118120 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117012 Number of HSP's gapped (non-prelim): 1103 length of query: 671 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 648 effective length of database: 17,143,297,704 effective search space: 11108856912192 effective search space used: 11108856912192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)