ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63b08 |
|---|---|
| Clone Library Name | barley_pub |
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 46.2 bits (108), Expect = 7e-05 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 12/72 (16%) Frame = +2 Query: 2 GLNKAAXVTL-------KLDLSTLPKPGVLVEL-----LRCRTKKQGARFLSFNPVNGNW 145 GLN+ A VTL K + P L ++ L ++KQGA+F + P G+W Sbjct: 814 GLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSW 873 Query: 146 KFQVDHFSRFGL 181 F+V HFS++GL Sbjct: 874 VFKVSHFSKYGL 885
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 46.2 bits (108), Expect = 7e-05 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 12/72 (16%) Frame = +2 Query: 2 GLNKAAXVTL-------KLDLSTLPKPGVLVEL-----LRCRTKKQGARFLSFNPVNGNW 145 GLN+ A VTL K + P L ++ L ++KQGA+F + P G+W Sbjct: 813 GLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSW 872 Query: 146 KFQVDHFSRFGL 181 F+V HFS++GL Sbjct: 873 VFKVSHFSKYGL 884
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 34.7 bits (78), Expect = 0.21 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = +2 Query: 113 FLSFNPVNGNWKFQVDHFSRFGL 181 ++S+NP G W F+V+HFS +GL Sbjct: 588 YISYNPFGGTWTFKVNHFSIWGL 610
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 33.5 bits (75), Expect = 0.47 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = -1 Query: 383 PPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHPWQ 204 PPY RLL + T P FP + + + APAH H + QQ + P Q Sbjct: 445 PPYGRLLPNNNTHPGPFPPT-----GGQSTAHPPAPAHHHHQ-----QQQQPQPQPQPQQ 494 Query: 203 HHL----PPRPQAQTY*SGRPGTSSYHS 132 HH PP P A Y ++S+H+ Sbjct: 495 HHHGNSGPPPPGA--YPHPLESSNSHHA 520
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 33.1 bits (74), Expect = 0.62 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Frame = +2 Query: 113 FLSFNPVNGNWKFQVDHFSRFGLXXXXXXXXXXXXXXXRQPVAEARDPPPNGHELELSHS 292 F+ FN +G W F+V HFSR+GL + D P L++S Sbjct: 919 FIDFN--DGKWIFKVQHFSRYGLLDDEEEENDMSSTSNEAGNLKKYDQP----NLKVS-- 970 Query: 293 LPAHLGLDPAKMQEMRMALFPNDEEDEDM-------EDGFPSDHRHLSRERMNVDSPNTS 451 G + + + FPND +++++ +D P D +S+ ++ +D + S Sbjct: 971 -----GKNDSFVTHHTPGAFPNDSKNKELNRHFLKVDDSAPLDDTFMSK-KVKLDFSSDS 1024 Query: 452 GKGQR 466 +R Sbjct: 1025 NVSER 1029
>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding protein) (IL4-BP)] Length = 825 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +2 Query: 248 RDPPPNGHELELSHSLPAHLGLDPA-KMQEMRMALFPNDEEDEDMEDGFPS 397 R+PP + L S P HLGL+P K+++M P ++ + + D S Sbjct: 659 REPPRSPQSSHLPSSSPEHLGLEPGEKVEDMPKPPLPQEQATDPLVDSLGS 709
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 30.8 bits (68), Expect = 3.1 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 6/89 (6%) Frame = -1 Query: 389 SHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHP 210 +HPP L+L+ + +PS+ PA G Q + N P +H GL P HP Sbjct: 983 AHPPPLQLMPQSQPLPSS-PAQPPGLTQSQ---NLPPPPASHPPTGLHQVAPQPPFAQHP 1038 Query: 209 WQHHLPPR------PQAQTY*SGRPGTSS 141 + PP P T +G PGTS+ Sbjct: 1039 FVPGGPPPITPPTCPSTSTPPAG-PGTSA 1066
>IWS1_USTMA (Q4P7X6) Transcription factor IWS1| Length = 380 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%) Frame = +2 Query: 344 ALFPNDEEDEDMEDG------FPSDHRHLSRERMNVDSPNTS--GKGQRMRSLSPLHGSS 499 A+F D+EDED +DG PS + +R+ N D P+ + K ++ R SP SS Sbjct: 76 AIFDEDDEDED-DDGDEVGNDLPSFRKRDARDASNADDPDAAVMRKKKKKRHHSPEEASS 134 Query: 500 QK 505 + Sbjct: 135 MR 136
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 30.8 bits (68), Expect = 3.1 Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Frame = -1 Query: 383 PPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHPWQ 204 PPY RLL + P FP S Q + A P H QQ +Q Q Sbjct: 445 PPYGRLLANSNAHPGPFPPSTGAQ------STAHPPVSTHHHHHQQQQQQQQQQQQQQQQ 498 Query: 203 HH---LPPRPQAQTY*SGRPGTSSYHS 132 HH PP P A + G SS+H+ Sbjct: 499 HHGNSGPPPPGA--FPHPLEGGSSHHA 523
>PCQAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associated protein| (PC2 glutamine/Q-rich-associated protein) (mPcqap) Length = 792 Score = 30.8 bits (68), Expect = 3.1 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 14/89 (15%) Frame = -1 Query: 398 QMESHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQP 219 Q + +L LHH LQ AQ + + L+ +QQP ++QP Sbjct: 216 QQQQQQQHLIKLHHQSQQQQIQQQQLQRMAQLQLQQQQQQQQQQALQAQPPMQQPSMQQP 275 Query: 218 --------------AHPWQHHLPPRPQAQ 174 H QHH PP PQAQ Sbjct: 276 QPPPSQALPQQLSQLHHPQHHQPP-PQAQ 303
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 30.4 bits (67), Expect = 4.0 Identities = 33/127 (25%), Positives = 43/127 (33%), Gaps = 13/127 (10%) Frame = -1 Query: 482 ETETSSSDLYHLCWVNPHSSFLC*GVCDQMESHPPYLRLLHHWETMPSAFPASLQGQAQD 303 E+++ SS + P + G + PP L PSA QG Sbjct: 722 ESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPAT 781 Query: 302 EQATNAK----APA-HAHLEVGLLLQQPVVEQP--------AHPWQHHLPPRPQAQTY*S 162 Q N APA H H++ L P + P A P Q P PQ + Sbjct: 782 SQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHGQ 841 Query: 161 GRPGTSS 141 G PG S Sbjct: 842 GPPGPHS 848 Score = 29.3 bits (64), Expect = 8.9 Identities = 21/67 (31%), Positives = 31/67 (46%) Frame = -1 Query: 389 SHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHP 210 +HPP L+L+ + +PS+ PA G Q + + PA +H GL P HP Sbjct: 975 AHPPPLQLMPQSQPLPSS-PAQPPGLTQSQ---SLPPPAASHPTTGLHQVPSQSPFPQHP 1030 Query: 209 WQHHLPP 189 + PP Sbjct: 1031 FVPGGPP 1037
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Frame = -1 Query: 389 SHPPYLRLLHHWETMPSAFPASLQGQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQ-PAH 213 +HPP L+L+ + +PS+ PA G Q + + PA +H G L Q P P H Sbjct: 974 AHPPPLQLMPQSQPLPSS-PAQPPGLTQSQ---SLPPPAASHPTTGGLHQVPSQSPFPQH 1029 Query: 212 PWQHHLPP 189 P+ PP Sbjct: 1030 PFVPGGPP 1037
>MAGBI_HUMAN (Q96M61) Melanoma-associated antigen B18 (MAGE-B18 antigen)| Length = 343 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -1 Query: 353 ETMPSAFPASLQGQAQD-EQATNAKAPAHAH 264 +T+PSAFP+ + +D EQ T A+A A AH Sbjct: 293 DTVPSAFPSCYEEALRDEEQRTQARAAARAH 323
>PHC2_MOUSE (Q9QWH1) Polyhomeotic-like protein 2 (mPH2) (Early development| regulatory protein 2) (p36) Length = 850 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -1 Query: 281 APAHAHLEVGLLLQQPVVEQPAHPW---QHHLPPRPQAQ 174 APA+AHL+ LL QP + P + Q PPRP Q Sbjct: 323 APAYAHLQSHQLLPQPPAKHPQPQFVAQQQPQPPRPAPQ 361
>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/84 (27%), Positives = 35/84 (41%) Frame = +2 Query: 236 VAEARDPPPNGHELELSHSLPAHLGLDPAKMQEMRMALFPNDEEDEDMEDGFPSDHRHLS 415 + EAR P GH E+ P L +D +MQ M ++ D + + G S R S Sbjct: 1950 LCEARAPLERGHSAEIPVGQPGTLAVD-VQMQNMTLS-----GPDAEPQPGLESQGRAAS 2003 Query: 416 RERMNVDSPNTSGKGQRMRSLSPL 487 R+ ++ RS+S L Sbjct: 2004 MPRLAAETQPAPDASPMKRSISTL 2027
>CRYD_XENLA (Q75WS4) Cryptochrome DASH| Length = 523 Score = 30.0 bits (66), Expect = 5.2 Identities = 18/62 (29%), Positives = 26/62 (41%) Frame = -1 Query: 317 GQAQDEQATNAKAPAHAHLEVGLLLQQPVVEQPAHPWQHHLPPRPQAQTY*SGRPGTSSY 138 G A A + + AHA+L +G P+V P W H+ +P S R G Sbjct: 445 GDAHTPWALSNASLAHANLSLGETYPYPIVMAP--EWSRHINQKPAGSWEKSARRGKGPS 502 Query: 137 HS 132 H+ Sbjct: 503 HT 504
>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2336 Score = 30.0 bits (66), Expect = 5.2 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Frame = +2 Query: 242 EARDPPPNGHELELSHSLPAHLGLDPAKMQEMRMALFPNDEEDEDMEDGFPSDHRHLSRE 421 EAR P GH E+ P L +D +MQ M + D + + G S R S Sbjct: 1950 EARAPLERGHSAEIPVGQPGALAVD-VQMQNMTLR-----GPDGEPQPGLESQGRAASMP 2003 Query: 422 RMNVD---SPNTSGKGQRMRSLSPL-HGS 496 R+ + +PN S + + +L+P HG+ Sbjct: 2004 RLAAETQPAPNASPMKRSISTLAPRPHGT 2032
>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor| Length = 226 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%) Frame = -1 Query: 311 AQDEQATNAKAPAHAHLEVG-----LLLQQPVVEQPAH----PWQHHLPPRP 183 +Q ++ P H H+ VG ++ QQP++ P H P QHH P P Sbjct: 85 SQQHPPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVPGHHSMTPNQHHQPNLP 136
>ZN512_MACFA (Q95JV5) Zinc finger protein 512| Length = 565 Score = 29.6 bits (65), Expect = 6.8 Identities = 13/48 (27%), Positives = 23/48 (47%) Frame = +2 Query: 353 PNDEEDEDMEDGFPSDHRHLSRERMNVDSPNTSGKGQRMRSLSPLHGS 496 P EEDED + H+ R++ PN + +R+R P++ + Sbjct: 104 PRQEEDEDYREFPQKKHKLYGRKQRPKTQPNPKSQARRIRKEPPVYAA 151
>ZN512_HUMAN (Q96ME7) Zinc finger protein 512| Length = 567 Score = 29.6 bits (65), Expect = 6.8 Identities = 13/48 (27%), Positives = 23/48 (47%) Frame = +2 Query: 353 PNDEEDEDMEDGFPSDHRHLSRERMNVDSPNTSGKGQRMRSLSPLHGS 496 P EEDED + H+ R++ PN + +R+R P++ + Sbjct: 105 PRQEEDEDYREFPQKKHKLYGRKQRPKTQPNPKSQARRIRKEPPVYAA 152
>METK_PINBN (P50300) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 393 Score = 29.6 bits (65), Expect = 6.8 Identities = 24/78 (30%), Positives = 35/78 (44%) Frame = -1 Query: 272 HAHLEVGLLLQQPVVEQPAHPWQHHLPPRPQAQTY*SGRPGTSSYHSQD*MRET*RLASS 93 H + V + Q P + Q H H RP+ +G G ++ D ET L Sbjct: 89 HCKVLVNIEQQSPDIAQGVHG---HFTKRPEEIG--AGDQGHMFGYATD---ETLELMPK 140 Query: 92 CGTLATRLGRRVSEVYSN 39 C LAT+LG +++EV N Sbjct: 141 CHVLATKLGAKLTEVRKN 158
>MATK_SCIVE (Q9MVV9) Maturase K (Intron maturase)| Length = 505 Score = 29.6 bits (65), Expect = 6.8 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +3 Query: 291 RCLLILGLTLQRCRKCGWHCFPMMKKTKIWRMAFHLITDTSAEKG*MWIH 440 R LL+L T + +KC +H F K W+ +FHL A+ +WIH Sbjct: 280 RSLLVLKGTQLQVKKCRYHLF------KFWQCSFHL----WAQPYRIWIH 319
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 29.6 bits (65), Expect = 6.8 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Frame = +2 Query: 239 AEARDPPPNGHE--LELSHSLPAHLGLDPAKMQ 331 AEAR PP GHE +E + SL A G D K Q Sbjct: 557 AEARPPPAGGHEPDVEKNTSLAASAGADVRKSQ 589
>YIGA_SHIFL (Q83IW8) Hypothetical protein yigA| Length = 235 Score = 29.6 bits (65), Expect = 6.8 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 11/84 (13%) Frame = +2 Query: 275 LELSHSLPAHLGLDPAKMQEMRMA-----------LFPNDEEDEDMEDGFPSDHRHLSRE 421 L L SL A LD M+ R A LFP + G PS+H HL+ Sbjct: 90 LYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFP-----DRWRLGAPSNHTHLALS 144 Query: 422 RMNVDSPNTSGKGQRMRSLSPLHG 493 R + + GQ L PL+G Sbjct: 145 RQSFEPLRIQRLGQEQHYLGPLNG 168
>YIGA_ECOLI (P23305) Hypothetical protein yigA| Length = 235 Score = 29.6 bits (65), Expect = 6.8 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 11/84 (13%) Frame = +2 Query: 275 LELSHSLPAHLGLDPAKMQEMRMA-----------LFPNDEEDEDMEDGFPSDHRHLSRE 421 L L SL A LD M+ R A LFP + G PS+H HL+ Sbjct: 90 LYLQRSLTAASSLDDMLMRFHRWARDLGLAGASLRLFP-----DRWRLGAPSNHTHLALS 144 Query: 422 RMNVDSPNTSGKGQRMRSLSPLHG 493 R + + GQ L PL+G Sbjct: 145 RQSFEPLRIQRLGQEQHYLGPLNG 168
>MIPR_LYMST (Q25410) Putative molluscan insulin-related peptide(s) receptor| precursor (EC 2.7.10.1) [Contains: Putative molluscan insulin-related peptide(s) receptor alpha chain; Putative molluscan insulin-related peptide(s) receptor beta chain] Length = 1607 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +1 Query: 463 EDEVSVSFAWFFSEIWKEIWCACKERTTCTAGIQC 567 +DE W +S+ K + C CKE T C C Sbjct: 214 KDECQSKRCWTYSDCQKGLNCQCKENTYCMENGSC 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,328,735 Number of Sequences: 219361 Number of extensions: 1982279 Number of successful extensions: 6771 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 6452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6757 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
