ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63b06 |
|---|---|
| Clone Library Name | barley_pub |
>Y1330_MYCTU (Q10641) Hypothetical protein Rv1330c/MT1372| Length = 448 Score = 95.9 bits (237), Expect = 9e-20 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 1/208 (0%) Frame = +2 Query: 2 PTNPMATALLTDQYQFSMAYAYWKAGKHADHAVFDLYFRKNPFGGEFTVFAGLEECIKFI 181 P N LLTD+Y+ +M A + G F+++ R+ P G + V AG ++ + Sbjct: 14 PDNQDPAGLLTDKYELTMLAAALRDGSANRPTTFEVFARRLPTGRRYGVVAGTGRLLEAL 73 Query: 182 ANFKFTEDEISFLQSVMPMCEDSFFDYLRGIDC-SDVEVYSIPEGSVVFPKVPLMRVEGP 358 F+F D L + + + YLR D++ Y+ EG + FP P++ V G Sbjct: 74 PQFRFDADACELLAQFL---DPATVRYLREFRFRGDIDGYA--EGELYFPGSPVLSVRGS 128 Query: 359 VAVVQLLETPFVNLINYASLVTTNAARHRHVAGKSKVLMEFGLRRAQGPDGAISASKYCF 538 A LLET +++ N+ + + + AAR AG + L+E G RR A++A++ + Sbjct: 129 FAECVLLETLVLSIFNHDTAIASAAARMVSAAG-GRPLIEMGSRRTH-ERAAVAAARAAY 186 Query: 539 MGGFDATSNVLAGHLFGIPLRGTHSHAY 622 + GF A+SN+ A +G+P GT +HA+ Sbjct: 187 IAGFAASSNLAAQRRYGVPAHGTAAHAF 214
>NPT1_YEAST (P39683) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 429 Score = 37.0 bits (84), Expect = 0.051 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 32/196 (16%) Frame = +2 Query: 158 LEECIKFIANFKFTEDEISFLQSVMPMCEDSFFDYLRGIDCSDVEVYSIPEGSVVFPKVP 337 L+E ++ N +FTE+EI +L+ +P ++ Y I S+ +++ PE + F Sbjct: 53 LKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKY---ISSSNYKLH--PEEQISFTSEE 107 Query: 338 L----------MRVEGPVAVVQLLETPFVNLI------------NYASLVTTNAARHRHV 451 + + V G L E P ++LI +Y + + + + Sbjct: 108 IEGKPTHYKLKILVSGSWKDTILYEIPLLSLISEAYFKFVDIDWDYENQLEQAEKKAETL 167 Query: 452 AGKSKVLMEFGLRR----------AQGPDGAISASKYCFMGGFDATSNVLAGHLFGIPLR 601 EFG RR QG A++ + TSN+L +G+ Sbjct: 168 FDNGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLLGTSNILFAKKYGVKPI 227 Query: 602 GTHSHAYVSSYMSLDE 649 GT +H +V S+ E Sbjct: 228 GTVAHEWVMGVASISE 243
>PNCB_NEIMB (Q9JYM9) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 402 Score = 35.0 bits (79), Expect = 0.20 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 24/187 (12%) Frame = +2 Query: 158 LEECIKFIANFKFTEDEISFLQSVMPMCEDSFFDYLRGIDCSDVEVYSIPEGSVVFPKVP 337 LE + + +FT DE+ +L+S + + F DYL + ++ + G+ ++ Sbjct: 53 LEAELDALCQLRFTHDELGYLRS-LRFIKSDFVDYL---ELFQLQRRFVEIGTDDKDRLN 108 Query: 338 LMRVEGPVAVVQLLE---TPFVNLINYASLVT------------TNAARHRHVAGKSK-- 466 + R+EGP+ E VN + + L T AAR + +A Sbjct: 109 I-RIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEIAAAQNPD 167 Query: 467 ----VLMEFGLRR---AQGPDGAISASKYCFMGGFDATSNVLAGHLFGIPLRGTHSHAYV 625 ++ +FG RR + I G TSNV GI GT +H ++ Sbjct: 168 EPPFLISDFGTRRRYKLAWQEHVIRTLLEAAPGIVRGTSNVFLAKKLGITPIGTMAHEFL 227 Query: 626 SSYMSLD 646 ++ +LD Sbjct: 228 QAFQALD 234
>PNCB_NEIMA (Q9JTM8) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 402 Score = 35.0 bits (79), Expect = 0.20 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 26/189 (13%) Frame = +2 Query: 158 LEECIKFIANFKFTEDEISFLQSVMPMCEDSFFDYLR--GIDCSDVEVYSIPEGSVVFPK 331 LE + + +FT DE+ +L+S + + F DYL + VEV + +G + Sbjct: 53 LEVELDALCQLRFTHDELDYLRS-LRFIKSDFVDYLELFQLQRRFVEVGTDDKGRL---- 107 Query: 332 VPLMRVEGPVAVVQLLE---TPFVNLINYASLVT------------TNAARHRHVAGKSK 466 +R+EGP+ E VN + + L T AAR + +A Sbjct: 108 --NIRIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEIAAAQN 165 Query: 467 ------VLMEFGLRR---AQGPDGAISASKYCFMGGFDATSNVLAGHLFGIPLRGTHSHA 619 ++ +FG RR + I TSNV GI GT +H Sbjct: 166 PDEPPFLISDFGTRRRYKLAWQEHVIRTLLEAAPSIVRGTSNVFLAKKLGITPIGTMAHE 225 Query: 620 YVSSYMSLD 646 ++ ++ +LD Sbjct: 226 FLQAFQALD 234
>PNCB_NEIG1 (Q5F836) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 402 Score = 35.0 bits (79), Expect = 0.20 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 26/189 (13%) Frame = +2 Query: 158 LEECIKFIANFKFTEDEISFLQSVMPMCEDSFFDYLR--GIDCSDVEVYSIPEGSVVFPK 331 LE + + +FT DE+ +L+S + + F DYL + VEV + +G + Sbjct: 53 LEAELDALCRLRFTHDELGYLRS-LRFIKSDFVDYLELFQLQRRFVEVGTDDKGRL---- 107 Query: 332 VPLMRVEGPVAVVQLLE---TPFVNLINYASLVT------------TNAARHRHVAGKSK 466 +R+EGP+ E VN + + L T AAR + +A Sbjct: 108 --NIRIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEIAAAQN 165 Query: 467 ------VLMEFGLRR---AQGPDGAISASKYCFMGGFDATSNVLAGHLFGIPLRGTHSHA 619 ++ +FG RR + I TSNV GI GT +H Sbjct: 166 PDEPPFLISDFGTRRRYKLAWQEHVIRTLLEAAPSIVRGTSNVYLAKKLGITPIGTMAHE 225 Query: 620 YVSSYMSLD 646 ++ ++ +LD Sbjct: 226 FLQAFQALD 234
>MTCU_CALSI (Q9U620) Copper-specific metallothionein-2 (CuMT-II)| Length = 64 Score = 33.1 bits (74), Expect = 0.74 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 352 GSCCCGSTT*DSICKSDQLCLFGNHQCCTAPSC 450 G CCCGST + C S Q C + C +A C Sbjct: 14 GKCCCGSTCNCTTCPSKQSCSCNDGACGSACQC 46
>PNCB_XYLFA (Q9PED1) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 394 Score = 32.3 bits (72), Expect = 1.3 Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 19/223 (8%) Frame = +2 Query: 32 TDQYQFSMAYAYWKAGKHADHAVFDLYFRKNPFGGEFTVFAG-LEECIKFIANFKFTEDE 208 TD Y+F+M A A + F+ G + F + I + +F+++E Sbjct: 11 TDLYKFTMMQAVLHQYPGAQ---VEYRFKCRTPGVDLARFINEISHEIDGLCALRFSKEE 67 Query: 209 ISFLQSVMPMCEDSFFDYLRGIDCSDVEVYSIPEGSVVFPKVPLMRVEGPVAVVQLLETP 388 + +L+ + M D F D+L G+ D + + + V ++ L + GP L E P Sbjct: 68 LDYLRGLRFMKPD-FVDFL-GLFHLDRKYLQLRASTQVSGEIEL-DIRGPWLHTILFEVP 124 Query: 389 FVNLINYASLVTTNA-----------ARHRHVAGKSKV----LMEFGLRRAQGPDGAISA 523 + +IN T+ A+ R + G+S + ++G RR Sbjct: 125 LLAIINEVWFRNTSMLNLDVGRARLDAKVRLLKGESGYEECSIADYGTRRRYSRQWHAEL 184 Query: 524 SKYCFMG---GFDATSNVLAGHLFGIPLRGTHSHAYVSSYMSL 643 G F TSNV +G GT +H Y+ ++ +L Sbjct: 185 LPLLAQGLGSNFVGTSNVYFAKQYGYTPLGTMAHEYLQAFQAL 227
>MYOD_DICDI (P34109) Myosin ID heavy chain| Length = 1109 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = -3 Query: 606 VPRSGMPNRCPANTLLVASKPPMKQYFEALIAPS---GPCARLKPNSIRTFDFPA 451 +P +PN P +L V S P K A AP GP + +KP++ +DF A Sbjct: 917 LPADTVPNLTPPESLPVVSIPIYKPAMNAKNAPQNSGGPASNVKPSAKALYDFDA 971
>PEPD_MOUSE (Q11136) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase)| (Proline dipeptidase) (Prolidase) (Imidodipeptidase) (Peptidase 4) Length = 492 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +2 Query: 65 YWKAGKHADHAVFDLYFRKNPFGGEFTVFAGLEECIKFIANFKFTEDEISFLQSVMPMC 241 Y AG D + D GGE+ FA C F AN KFTED+ + ++V+ C Sbjct: 255 YGHAGAPNDRTIKDGDICLFDMGGEYYCFASDITC-SFPANGKFTEDQKAIYEAVLRSC 312
>PNCB_PHOLL (Q7N621) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 404 Score = 31.6 bits (70), Expect = 2.2 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 25/236 (10%) Frame = +2 Query: 11 PMATALL-TDQYQFSMAYAYWKAGKHADHAVFDLYFRKNPFGGEFTVFAGLEECIKFIAN 187 P+ +LL TD Y+ M A + H V + R + GE+ L + +A+ Sbjct: 7 PIIKSLLDTDAYKLHMQQAVYHRYSHMP-VVAEFRCRGDELLGEYAT--ELRHQVNMMAD 63 Query: 188 FKFTEDEISFLQSVMPMCEDSFFDYLRGIDCSDVEV-YSIPEGS------------VVFP 328 T+ E ++L S +P + + D+L+ + +V S+ G V+ Sbjct: 64 LALTDAEFNYLSS-LPFFKADYLDWLKTFRFNPQQVNISVTNGGQLAIHISGLWYEVIMW 122 Query: 329 KVPLMRVEGPVAVVQLL------ETPFVNLINYASLVTTNAARHRHVAG---KSKVLMEF 481 +VPL+ + + +L+ + N +N + +H G S LM+F Sbjct: 123 EVPLLAL-----ISELIHRHHSPDNTVENAVNQLRKLIKLFYQHAENEGIDLSSFKLMDF 177 Query: 482 GLRR--AQGPDGAISASKYCFMGGFDATSNVLAGHLFGIPLRGTHSHAYVSSYMSL 643 G RR + A+ + TSN G+P GT +H + ++ + Sbjct: 178 GTRRRFSHRVQHAVVSELQQHFPYLIGTSNYQLAQQLGLPPVGTQAHEWFQAHQQI 233
>PNCB_XYLFT (Q87EC4) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 394 Score = 30.4 bits (67), Expect = 4.8 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 19/169 (11%) Frame = +2 Query: 194 FTEDEISFLQSVMPMCEDSFFDYLRGIDCSDVEVYSIPEGSVVFPKVPLMRVEGPVAVVQ 373 F+++E+ +L+ + M D F D+L G+ D + + S V ++ L + GP Sbjct: 63 FSKEELDYLRGLRFMKPD-FVDFL-GLFHLDRKYLQLRASSQVPGEIEL-DIRGPWLHTI 119 Query: 374 LLETPFVNLINYA-----SLVTTNAARHRHVAGKSKVLME-----------FGLRRAQGP 505 L E P + +IN S++ + R R + K ++L + +G RR Sbjct: 120 LFEVPLLAIINEVWFRNTSVLNLDVGRDR-LDAKVRLLKDESGYEECSIADYGTRRRYSR 178 Query: 506 DGAISASKYCFMG---GFDATSNVLAGHLFGIPLRGTHSHAYVSSYMSL 643 G F TSNV +G GT +H Y+ ++ +L Sbjct: 179 QWHAELLPLLAQGLGSNFVGTSNVYFAKQYGYTPLGTMAHEYLQAFQAL 227
>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) (Fragment) Length = 1048 Score = 30.0 bits (66), Expect = 6.3 Identities = 20/68 (29%), Positives = 30/68 (44%) Frame = -1 Query: 455 QQHDGAVQHWWLPKRHS*SDLQMESQVVEPQQQDPRLSSRALLERLPSPQEWSTLQHQSN 276 + DG Q P++ Q + Q + QQQ P S+ + PS Q + Q Q Sbjct: 828 EDRDGRQQQ---PQQQQQQQQQQQQQQQQQQQQPPPQQSQTQQQPAPSQQP-APAQQQPQ 883 Query: 275 QFHGDNQR 252 QF DN++ Sbjct: 884 QFRNDNRQ 891
>DIHR_MANSE (P35464) Diuretic hormone receptor (DH-R)| Length = 395 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = -2 Query: 331 FWKDYRALRNGVHFNIRA---INSTEIIKE*ILTHWHD*LQERNLIFCELKVC-NEFY 170 ++KD R LRN +H N+ + +++ I +L +W D Q+ L +C N FY Sbjct: 110 YFKDLRCLRNTIHTNLMSTYILSACSWILNLVLQNWSDESQQDQTSCMILVICMNYFY 167
>PNCB_BORPE (Q7VTF7) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 405 Score = 29.6 bits (65), Expect = 8.2 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 24/179 (13%) Frame = +2 Query: 179 IANFKFTEDEISFLQSVMPMCEDSFFDYLRGIDCSDVEVYSIPEGSVVF-----PKVPLM 343 + +FT +E+ +L+ + + D F D+L ++ +PE + P + Sbjct: 70 LCQLRFTSEELDYLRGLRFIKSD-FVDFLG--------LFHLPERCIFIGEGEQPGEISI 120 Query: 344 RVEGPVAVVQLLETPFVNLINYASLVTTNA------ARHRHVAGKSKVL----------M 475 V+GP L E P + ++N T R R + + VL Sbjct: 121 TVKGPWLHTILFEIPVLAIVNEVYFRNTRRNPDWEEGRKRLQSKMNLVLDDPALADFRVA 180 Query: 476 EFGLRRAQGP---DGAISASKYCFMGGFDATSNVLAGHLFGIPLRGTHSHAYVSSYMSL 643 E+G RR + +S K F TSNVL G+ GT H Y+ + +L Sbjct: 181 EYGTRRRFSKVWHEEIVSTMKARMGVHFAGTSNVLLAMRHGVLPLGTMGHEYLQACQAL 239
>PNCB_BORPA (Q7W5G3) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 405 Score = 29.6 bits (65), Expect = 8.2 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 24/179 (13%) Frame = +2 Query: 179 IANFKFTEDEISFLQSVMPMCEDSFFDYLRGIDCSDVEVYSIPEGSVVF-----PKVPLM 343 + +FT +E+ +L+ + + D F D+L ++ +PE + P + Sbjct: 70 LCQLRFTSEELDYLRGLRFIKSD-FVDFLG--------LFHLPERCIFIGEGEQPGEISI 120 Query: 344 RVEGPVAVVQLLETPFVNLINYASLVTTNA------ARHRHVAGKSKVL----------M 475 V+GP L E P + ++N T R R + + VL Sbjct: 121 TVKGPWLHTILFEIPVLAIVNEVYFRNTRRNPDWEEGRKRLQSKMNLVLDDPALADFRVA 180 Query: 476 EFGLRRAQGP---DGAISASKYCFMGGFDATSNVLAGHLFGIPLRGTHSHAYVSSYMSL 643 E+G RR + +S K F TSNVL G+ GT H Y+ + +L Sbjct: 181 EYGTRRRFSKVWHEEIVSTMKARMGVHFAGTSNVLLAMRHGVLPLGTMGHEYLQACQAL 239
>PNCB_BORBR (Q7WCZ8) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 405 Score = 29.6 bits (65), Expect = 8.2 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 24/179 (13%) Frame = +2 Query: 179 IANFKFTEDEISFLQSVMPMCEDSFFDYLRGIDCSDVEVYSIPEGSVVF-----PKVPLM 343 + +FT +E+ +L+ + + D F D+L ++ +PE + P + Sbjct: 70 LCQLRFTSEELDYLRGLRFIKSD-FVDFLG--------LFHLPERCIFIGEGEQPGEISI 120 Query: 344 RVEGPVAVVQLLETPFVNLINYASLVTTNA------ARHRHVAGKSKVL----------M 475 V+GP L E P + ++N T R R + + VL Sbjct: 121 TVKGPWLHTILFEIPVLAIVNEVYFRNTRRNPDWEEGRKRLQSKMNLVLDDPALADFRVA 180 Query: 476 EFGLRRAQGP---DGAISASKYCFMGGFDATSNVLAGHLFGIPLRGTHSHAYVSSYMSL 643 E+G RR + +S K F TSNVL G+ GT H Y+ + +L Sbjct: 181 EYGTRRRFSKVWHEEIVSTMKARMGVHFAGTSNVLLAMRHGVLPLGTMGHEYLQACQAL 239 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,513,971 Number of Sequences: 219361 Number of extensions: 1979373 Number of successful extensions: 5514 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5503 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
