Clone Name	bah62m06
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1249	0.0
2	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	1124	0.0
3	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	928	0.0
4	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	783	0.0
5	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	611	e-171
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	591	e-165
7	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	507	e-140
8	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	507	e-140
9	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	507	e-140
10	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	507	e-140
11	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	507	e-140
12	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	507	e-140
13	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	500	e-138
14	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	488	e-134
15	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	434	e-118
16	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	408	e-111
17	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	373	e-100
18	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	325	1e-85
19	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	301	2e-78
20	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	301	2e-78
21	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	293	4e-76
22	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	270	5e-69
23	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	270	5e-69
24	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	270	5e-69
25	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	270	5e-69
26	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	266	9e-68
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	264	3e-67
28	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	238	2e-59
29	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	236	8e-59
30	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	228	2e-56
31	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	228	2e-56
32	gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precurso...	226	7e-56
33	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	224	3e-55
34	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	224	3e-55
35	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	224	3e-55
36	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	224	3e-55
37	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	224	3e-55
38	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	224	3e-55
39	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	224	3e-55
40	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	224	3e-55
41	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	224	3e-55
42	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	224	3e-55
43	gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precur...	224	3e-55
44	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	218	2e-53
45	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	218	2e-53
46	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	214	3e-52
47	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	210	4e-51
48	gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1...	204	3e-49
49	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	202	1e-48
50	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	194	3e-46
51	gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase m...	192	1e-45
52	emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphospha...	188	2e-44
53	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	167	6e-38
54	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	163	9e-37
55	emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubis...	163	9e-37
56	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	105	2e-19
57	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	105	2e-19
58	gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate...	100	1e-17
59	gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precur...	96	2e-16
60	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	94	7e-16
61	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	86	2e-13
62	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	86	2e-13
63	gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete s...	80	1e-11
64	gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete se...	78	4e-11
65	gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete se...	78	4e-11
66	emb|Y10657.1|CLRCAGENE C.littorale rca gene	66	2e-07
67	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	54	6e-04
68	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	46	0.15
69	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.15
70	gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome	44	0.59
71	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.59
72	emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA	42	2.3
73	emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA	42	2.3
74	emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA	42	2.3
75	emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA	42	2.3
76	emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA	42	2.3
77	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	9.2
78	gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ...	40	9.2
79	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	9.2
80	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	40	9.2
81	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	9.2
82	ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot...	40	9.2
83	ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop...	40	9.2
84	gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co...	40	9.2
85	gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence	40	9.2
86	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	9.2
87	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	9.2
88	gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro...	40	9.2
89	ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h...	40	9.2
90	gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite...	40	9.2
91	gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite...	40	9.2
92	ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	9.2
93	gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC...	40	9.2
94	gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro...	40	9.2
95	gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, com...	40	9.2
96	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	9.2
97	emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch...	40	9.2
98	gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co...	40	9.2
99	gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co...	40	9.2
100	emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ...	40	9.2
101	dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023...	40	9.2
102	gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, comple...	40	9.2
103	gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4...	40	9.2
104	gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com...	40	9.2
105	gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co...	40	9.2
106	gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome...	40	9.2
107	gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 ...	40	9.2
108	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	9.2
109	gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana...	40	9.2
110	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	9.2
111	gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I...	40	9.2
112	gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209....	40	9.2
113	ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 ...	40	9.2
114	emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chr...	40	9.2
115	gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana...	40	9.2
116	gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple...	40	9.2
117	gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc...	40	9.2
118	dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds	40	9.2
119	dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:R...	40	9.2
120	emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,...	40	9.2
121	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	9.2
122	gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltrans...	40	9.2
123	emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chr...	40	9.2
124	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	9.2
125	emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein...	40	9.2

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1249 bits (630), Expect = 0.0
 Identities = 646/650 (99%), Gaps = 1/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 23  ccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatgg 82
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 87  ccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatgg 145

                                                                       
Query: 83  ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 205

                                                                       
Query: 143 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 265

                                                                       
Query: 203 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 325

                                                                       
Query: 263 agggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 322
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 385

                                                                       
Query: 323 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 445

                                                                       
Query: 383 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 505

                                                                       
Query: 443 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 565

                                                                       
Query: 503 tgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 625

                                                                       
Query: 563 cattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccg 685

                                                             
Query: 623 gagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 735

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score = 1124 bits (567), Expect = 0.0
 Identities = 635/657 (96%), Gaps = 2/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  ctgatnaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcaca 75
           ||||| ||||||||||||||||  |||||||| ||||||||||||||| |||||||||||
Sbjct: 1   ctgatcaccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcaca 58

                                                                       
Query: 76  gagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttc 135
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 59  gagatggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttc 118

                                                                       
Query: 136 ctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcc 178

                                                                       
Query: 196 aaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgac 255
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 179 aaggccaacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgac 238

                                                                       
Query: 256 aagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaag 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaag 298

                                                                       
Query: 316 ggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctc 375
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 299 ggcatcgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctc 358

                                                                       
Query: 376 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatggga 435
           ||||| |||||||||||||||||||| ||   ||||||||||||||||||||||||||||
Sbjct: 359 agctcatacgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatggga 418

                                                                       
Query: 436 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 419 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaagaacttc 478

                                                                       
Query: 496 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 538

                                                                       
Query: 556 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatg 615
           |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 539 ggaaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatgatg 598

                                                                    
Query: 616 agtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 599 agtgccggagagctggagagtggcaacgccggagagccagccaagctcatcaggcag 655

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  928 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 193 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 360

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 420

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 480

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  783 bits (395), Expect = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Plus

                                                                        
Query: 114  ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 174  gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637

                                                                        
Query: 234  cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697

                                                                        
Query: 294  gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 353
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757

                                                                        
Query: 354  cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817

                                                                        
Query: 414  cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877

                                                       
Query: 474  tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 516
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920



 Score =  408 bits (206), Expect = e-111
 Identities = 335/378 (88%)
 Strand = Plus / Plus

                                                                        
Query: 258  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 317
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                        
Query: 318  catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 377
            |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058

                                                                        
Query: 378  ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 437
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118

                                                                        
Query: 438  cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 497
              | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178

                                                                        
Query: 498  gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 557
            ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || ||
Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238

                                                                        
Query: 558  aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 617
             || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 3298

                              
Query: 618  tgccggagagctggagag 635
             ||||| |||||||||||
Sbjct: 3299 cgccggtgagctggagag 3316



 Score =  180 bits (91), Expect = 4e-42
 Identities = 100/102 (98%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   cactgatnaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagca 73
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5298 cactgatcaccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagca 5356

                                                      
Query: 74   cagagatggctgctgccttctcctccaccgtcggggctccgg 115
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357 cagagatggctgctgccttctcctccaccgtcggggctccgg 5398



 Score =  174 bits (88), Expect = 2e-40
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                        
Query: 515  agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129

                                        
Query: 575  agcttgtgttcgccaagatgggcatcaa 602
            ||||||||||||||||||||||||||||
Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157



 Score =  139 bits (70), Expect = 1e-29
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                        
Query: 603  ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6408 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 6467

                      
Query: 663  catcaggcag 672
            ||||||||||
Sbjct: 6468 catcaggcag 6477

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  611 bits (308), Expect = e-171
 Identities = 392/420 (93%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           ||||| ||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 557 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 616

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 617 atgagtgccggagagctggagagcggcaacgccggagagccagccaagctcatcaggcag 676



 Score =  228 bits (115), Expect = 2e-56
 Identities = 139/147 (94%)
 Strand = Plus / Plus

                                                                       
Query: 75  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 134
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 135 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 194
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                                      
Query: 195 caaggccaacaggttcacagtcatggc 221
           |||||||||||||||||| ||||||||
Sbjct: 196 caaggccaacaggttcaccgtcatggc 222

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  591 bits (298), Expect = e-165
 Identities = 389/420 (92%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           ||||| ||||| |||||  | ||||||||||||| |||||| || |||||||||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 547 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcatg 606

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 607 atgagtgccggagagctggagagcggcaacgccggagagccagccaagctcatcaggcag 666



 Score =  222 bits (112), Expect = 1e-54
 Identities = 138/147 (93%)
 Strand = Plus / Plus

                                                                       
Query: 75  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 134
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 135 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 194
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                                      
Query: 195 caaggccaacaggttcacagtcatggc 221
           |||||||||||||||||| ||||||||
Sbjct: 186 caaggccaacaggttcaccgtcatggc 212

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  507 bits (256), Expect = e-140
 Identities = 379/420 (90%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 504 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 563

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 564 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 623



 Score =  172 bits (87), Expect = 1e-39
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 136
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 137 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 196
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

                          
Query: 197 aggccaacaggttca 211
           |   |||||||||||
Sbjct: 145 acatcaacaggttca 159

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  507 bits (256), Expect = e-140
 Identities = 379/420 (90%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 541 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 600

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 601 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 660



 Score =  172 bits (87), Expect = 1e-39
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 136
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 137 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 196
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

                          
Query: 197 aggccaacaggttca 211
           |   |||||||||||
Sbjct: 182 acatcaacaggttca 196

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  507 bits (256), Expect = e-140
 Identities = 379/420 (90%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 540 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 599

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 600 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 659



 Score =  172 bits (87), Expect = 1e-39
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 136
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 137 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 196
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 197 aggccaacaggttca 211
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  507 bits (256), Expect = e-140
 Identities = 379/420 (90%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 324 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 383

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 384 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 443

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  507 bits (256), Expect = e-140
 Identities = 379/420 (90%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 545 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 604

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 605 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 664



 Score =  165 bits (83), Expect = 2e-37
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 136
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 137 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 196
           | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

                          
Query: 197 aggccaacaggttca 211
           |   |||||||||||
Sbjct: 186 acatcaacaggttca 200

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  507 bits (256), Expect = e-140
 Identities = 379/420 (90%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 539 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 598

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 599 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 658



 Score =  172 bits (87), Expect = 1e-39
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 136
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 137 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 196
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

                          
Query: 197 aggccaacaggttca 211
           |   |||||||||||
Sbjct: 180 acatcaacaggttca 194

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  500 bits (252), Expect = e-138
 Identities = 378/420 (90%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||
Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 552 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 611

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 612 atgagcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 671



 Score =  172 bits (87), Expect = 1e-39
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 136
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 137 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 196
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

                          
Query: 197 aggccaacaggttca 211
           |   |||||||||||
Sbjct: 193 acatcaacaggttca 207

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  488 bits (246), Expect = e-134
 Identities = 377/420 (89%), Gaps = 3/420 (0%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           ||||||||||||||||| ||| |||||||||||||||| || |||||  ||||||| |||
Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 512 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatg 571

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||||||||||||||| || |||   |||||||| |||||||| |||||||||
Sbjct: 572 atgagcgccggagagctggagagcggcaac---ggagagccggccaagctgatcaggcag 628



 Score =  172 bits (87), Expect = 1e-39
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 136
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 137 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 196
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

                          
Query: 197 aggccaacaggttca 211
           |   |||||||||||
Sbjct: 153 acatcaacaggttca 167

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  434 bits (219), Expect = e-118
 Identities = 366/415 (88%)
 Strand = Plus / Plus

                                                                       
Query: 258 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 317
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                       
Query: 318 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 377
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336

                                                                       
Query: 378 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 437
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  ||
Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396

                                                                       
Query: 438 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 497
             | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456

                                                                       
Query: 498 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 557
           ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| || ||
Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacaggg 516

                                                                       
Query: 558 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 617
            || || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caagtcgttccagtgcgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 576

                                                                  
Query: 618 tgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
            ||||||||||||||||| || ||||| || ||||| |||||||| ||| |||||
Sbjct: 577 cgccggagagctggagagcggcaacgccggcgagccggccaagctgatccggcag 631



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 78  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 137
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 138 cgggaagaagctcaagaagcagg 160
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  408 bits (206), Expect = e-111
 Identities = 335/378 (88%)
 Strand = Plus / Plus

                                                                       
Query: 258 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 317
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                       
Query: 318 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 377
           |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489

                                                                       
Query: 378 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 437
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549

                                                                       
Query: 438 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 497
             | |||||||| || || ||||||||||||||  | ||||| ||| |||| ||||||||
Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609

                                                                       
Query: 498 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 557
           ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || ||
Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669

                                                                       
Query: 558 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 617
            || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 670 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcatgatgag 729

                             
Query: 618 tgccggagagctggagag 635
            ||||| |||||||||||
Sbjct: 730 cgccggtgagctggagag 747

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  373 bits (188), Expect = e-100
 Identities = 269/296 (90%)
 Strand = Plus / Plus

                                                                       
Query: 377 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 436
           |||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||||||
Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386

                                                                       
Query: 437 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 496
           ||||||||||||| |||||||||||||||||||| || |||||  ||||||| |||||||
Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446

                                                                       
Query: 497 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 556
           ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506

                                                                       
Query: 557 gaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatga 616
           ||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 507 gaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcatgatga 566

                                                                   
Query: 617 gtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           | ||||||||||||||||| || ||||| |||||||| || ||||| |||||||||
Sbjct: 567 gcgccggagagctggagagcggcaacgccggagagccggcgaagctgatcaggcag 622



 Score =  172 bits (87), Expect = 1e-39
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 136
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 137 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 196
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 197 aggccaacaggttca 211
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 313 aagggcatcgtggactcgctcttccaggc 341
           |||||  |||| ||||| || ||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  325 bits (164), Expect = 1e-85
 Identities = 356/420 (84%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||| |||| |||   |||||||||||||| | ||| |||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||| ||| ||||||||||||    |   ||| ||||||||||||  |||
Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           |  ||||||||||| ||    |  |||||||||||||| || ||||| |||||||| |||
Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || 
Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| ||||| || ||||| || ||||||||||||||||||| ||||||||||
Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcacccccatcatg 572

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||
Sbjct: 573 atgagcgccggcgagctggagagcggcaacgccggagagcccgccaagctcatcaggcag 632



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 79  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 132
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 133 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 189
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 190 agctcca 196
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  301 bits (152), Expect = 2e-78
 Identities = 326/384 (84%)
 Strand = Plus / Plus

                                                                       
Query: 289 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 348
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                                                                       
Query: 349 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 408
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354

                                                                       
Query: 409 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 468
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414

                                                                       
Query: 469 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 528
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474

                                                                       
Query: 529 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 588
           |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 534

                                                                       
Query: 589 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 648
           |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 535 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 594

                                   
Query: 649 gagccagccaagctcatcaggcag 672
           ||||| || ||||| ||| |||||
Sbjct: 595 gagccggcgaagctgatccggcag 618

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  301 bits (152), Expect = 2e-78
 Identities = 326/384 (84%)
 Strand = Plus / Plus

                                                                       
Query: 289 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 348
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                                                                       
Query: 349 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 408
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217

                                                                       
Query: 409 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 468
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277

                                                                       
Query: 469 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 528
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337

                                                                       
Query: 529 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 588
           |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 397

                                                                       
Query: 589 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 648
           |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 398 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 457

                                   
Query: 649 gagccagccaagctcatcaggcag 672
           ||||| || ||||| ||| |||||
Sbjct: 458 gagccggcgaagctgatccggcag 481

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  293 bits (148), Expect = 4e-76
 Identities = 325/384 (84%)
 Strand = Plus / Plus

                                                                       
Query: 289 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 348
           |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                                                                       
Query: 349 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 408
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||   || || || 
Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247

                                                                       
Query: 409 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 468
             || | |||| ||||||||| ||   || || ||||||||||| || ||||||||||||
Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307

                                                                       
Query: 469 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 528
           ||||| || ||  || |||| |||||||||| | |||||||||||||||| || ||||| 
Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367

                                                                       
Query: 529 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 588
           |||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||||
Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaacttgtgttcgcc 427

                                                                       
Query: 589 aagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctgga 648
           |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| |||
Sbjct: 428 aagatgggaatcaaccccatcatgatgagcgccggtgagctggagagcggcaacgccgga 487

                                   
Query: 649 gagccagccaagctcatcaggcag 672
           ||||| || ||||| ||| |||||
Sbjct: 488 gagccggcgaagctgatccggcag 511

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  270 bits (136), Expect = 5e-69
 Identities = 178/192 (92%)
 Strand = Plus / Minus

                                                                          
Query: 411    gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 470
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376

                                                                          
Query: 471    tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 530
               || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316

                                                                          
Query: 531    gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 590
              |||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 109256

                          
Query: 591    gatgggcatcaa 602
              |||||| |||||
Sbjct: 109255 gatggggatcaa 109244



 Score =  176 bits (89), Expect = 6e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                          
Query: 253    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 313    aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
              |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                                           
Query: 373    ctcagctcctacgagtacgtcagccaggg 401
              |||||||||||||||||| ||||||||||
Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                          
Query: 258    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 317
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 318    catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 368
              | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 124    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 183
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 184    ggcaagagctccaaggccaacaggttca 211
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                          
Query: 603    ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 662
              ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 109158 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 109099

                        
Query: 663    catcaggcag 672
               |||||||||
Sbjct: 109098 gatcaggcag 109089



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 77     agatggctgctgccttctcctccaccgtcggggctccgg 115
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 565    ttccagtgtgagcttgtgttcgccaagatgggcatcaa 602
              ||||||||||| || || |||||||||||||| |||||
Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  270 bits (136), Expect = 5e-69
 Identities = 178/192 (92%)
 Strand = Plus / Minus

                                                                         
Query: 411   gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 470
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253

                                                                         
Query: 471   tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 530
              || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193

                                                                         
Query: 531   gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 590
             |||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 31133

                         
Query: 591   gatgggcatcaa 602
             |||||| |||||
Sbjct: 31132 gatggggatcaa 31121



 Score =  176 bits (89), Expect = 6e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                         
Query: 253   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 313   aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
             |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

                                          
Query: 373   ctcagctcctacgagtacgtcagccaggg 401
             |||||||||||||||||| ||||||||||
Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                         
Query: 258   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 317
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 318   catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 368
             | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 124   ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 183
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 184   ggcaagagctccaaggccaacaggttca 211
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                         
Query: 603   ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 662
             ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 31035 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 30976

                       
Query: 663   catcaggcag 672
              |||||||||
Sbjct: 30975 gatcaggcag 30966



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 77    agatggctgctgccttctcctccaccgtcggggctccgg 115
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 565   ttccagtgtgagcttgtgttcgccaagatgggcatcaa 602
             ||||||||||| || || |||||||||||||| |||||
Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  270 bits (136), Expect = 5e-69
 Identities = 178/192 (92%)
 Strand = Plus / Minus

                                                                            
Query: 411      gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 470
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515

                                                                            
Query: 471      tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 530
                 || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455

                                                                            
Query: 531      gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 590
                |||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28304395

                            
Query: 591      gatgggcatcaa 602
                |||||| |||||
Sbjct: 28304394 gatggggatcaa 28304383



 Score =  176 bits (89), Expect = 6e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 253      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 313      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                                             
Query: 373      ctcagctcctacgagtacgtcagccaggg 401
                |||||||||||||||||| ||||||||||
Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 258      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 317
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 318      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 368
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 124      ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 183
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 184      ggcaagagctccaaggccaacaggttca 211
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 603      ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 662
                ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 28304297 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 28304238

                          
Query: 663      catcaggcag 672
                 |||||||||
Sbjct: 28304237 gatcaggcag 28304228



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 77       agatggctgctgccttctcctccaccgtcggggctccgg 115
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 565      ttccagtgtgagcttgtgttcgccaagatgggcatcaa 602
                ||||||||||| || || |||||||||||||| |||||
Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  270 bits (136), Expect = 5e-69
 Identities = 178/192 (92%)
 Strand = Plus / Minus

                                                                            
Query: 411      gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 470
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964

                                                                            
Query: 471      tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 530
                 || |||||  ||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904

                                                                            
Query: 531      gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 590
                |||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28286844

                            
Query: 591      gatgggcatcaa 602
                |||||| |||||
Sbjct: 28286843 gatggggatcaa 28286832



 Score =  176 bits (89), Expect = 6e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 253      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 313      aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
                |||||  |||| ||||| || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                                             
Query: 373      ctcagctcctacgagtacgtcagccaggg 401
                |||||||||||||||||| ||||||||||
Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146



 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                            
Query: 258      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 317
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 318      catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 368
                | |||| ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 124      ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 183
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 184      ggcaagagctccaaggccaacaggttca 211
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 603      ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 662
                ||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||
Sbjct: 28286746 ccccatcatgatgagcgccggagagctggagagcggcaacgccggagagccggcgaagct 28286687

                          
Query: 663      catcaggcag 672
                 |||||||||
Sbjct: 28286686 gatcaggcag 28286677



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 77       agatggctgctgccttctcctccaccgtcggggctccgg 115
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 565      ttccagtgtgagcttgtgttcgccaagatgggcatcaa 602
                ||||||||||| || || |||||||||||||| |||||
Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score =  266 bits (134), Expect = 9e-68
 Identities = 346/420 (82%)
 Strand = Plus / Plus

                                                                       
Query: 253 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 312
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 313 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 372
           |||||| |||| |||   |||||||||||||| |      ||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332

                                                                       
Query: 373 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 432
           |||||||||||||| ||| ||||||||||||    |   ||| ||||||||||||  |||
Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392

                                                                       
Query: 433 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 492
           |  ||||||||||| ||    |  |||||||||||||| || ||||| |||||||| |||
Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452

                                                                       
Query: 493 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 552
           |||||||||||||| ||||||||| | || |||||| ||||||||  ||||||||| || 
Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512

                                                                       
Query: 553 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 612
           || |||||||| ||||| || ||||| || |||||||||||||||||||     ||||||
Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcannnnnatcatg 572

                                                                       
Query: 613 atgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           ||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||
Sbjct: 573 atgagcgccggcgagctggagagcggcaacgccggagagcccgccaagctcatcaggcag 632



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 79  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 132
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 133 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 189
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 190 agctcca 196
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score =  264 bits (133), Expect = 3e-67
 Identities = 343/413 (83%)
 Strand = Plus / Plus

                                                                       
Query: 259 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 318
           |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || 
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339

                                                                       
Query: 319 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 378
           || || |||||  | ||||| || |||| |  ||| || || ||| | || ||| | |||
Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399

                                                                       
Query: 379 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 438
           ||||| |||||| | ||||| ||||| || |  |||||||| ||||||| |||||  || 
Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459

                                                                       
Query: 439 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 498
           |||||||| || || ||||||||||||||||||||||| ||  || |||| |||| ||||
Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519

                                                                       
Query: 499 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 558
           ||||| || ||||| ||| | || || ||||||||||| ||||||||||| |||||||||
Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579

                                                                       
Query: 559 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 618
           ||||| ||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct: 580 aaatctttccaatgtgagcttgtctttgccaagatgggaatcaaccccattatgatgagt 639

                                                                
Query: 619 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggca 671
           ||||||||  |||| ||||||||||| ||||| ||||||||| | ||||||||
Sbjct: 640 gccggagaattggaaagtgggaacgccggagaaccagccaagttgatcaggca 692

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score =  238 bits (120), Expect = 2e-59
 Identities = 192/216 (88%)
 Strand = Plus / Plus

                                                                       
Query: 457 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 516
           |||||||||||||| || ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 22  ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81

                                                                       
Query: 517 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 576
            | || |||||| ||||||||||||||||||| || || |||||||| ||||| || |||
Sbjct: 82  gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141

                                                                       
Query: 577 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 636
           || || ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| 
Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccggcgagctggagagc 201

                                               
Query: 637 gggaacgctggagagccagccaagctcatcaggcag 672
           || ||||| |||||||| ||||||||||||||||||
Sbjct: 202 ggcaacgccggagagcccgccaagctcatcaggcag 237

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score =  236 bits (119), Expect = 8e-59
 Identities = 218/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 421 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 480
           ||||||| |||||  || |||||||| |||||||| |||||||||||||||||||| || 
Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315

                                                                       
Query: 481 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 540
            || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| |||
Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375

                                                                       
Query: 541 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 600
           |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 435

                                                                       
Query: 601 aaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaag 660
           |||||||||||||||||||||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 436 aaccccatcatgatgagtgccggagaactggaaagtggaaacgccggtgaaccagccaag 495

                      
Query: 661 ctcatcaggca 671
            | ||||||||
Sbjct: 496 ttgatcaggca 506

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  228 bits (115), Expect = 2e-56
 Identities = 202/231 (87%)
 Strand = Plus / Plus

                                                                       
Query: 442 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 501
           ||||||||||| || ||||||||||||||||| || ||  || |||| |||||||||| |
Sbjct: 87  tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146

                                                                       
Query: 502 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 561
            |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || |||
Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206

                                                                       
Query: 562 tcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgcc 621
           || ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 207 tccttccaatgtgaacttgtgttcgccaagatgggaatcaaccccatcatgatgagcgcc 266

                                                              
Query: 622 ggagagctggagagtgggaacgctggagagccagccaagctcatcaggcag 672
           || ||||||||||| || ||||| |||||||| || ||||| ||| |||||
Sbjct: 267 ggtgagctggagagcggcaacgccggagagccggcgaagctgatccggcag 317

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score =  228 bits (115), Expect = 2e-56
 Identities = 217/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 421 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 480
           ||||||| |||||  || ||||||||||||||||| |||||||||||||||||||| || 
Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316

                                                                       
Query: 481 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 540
            ||  ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| |||
Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376

                                                                       
Query: 541 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 600
           |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 436

                                                                       
Query: 601 aaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaag 660
           |||||||||||||||||||||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 437 aaccccatcatgatgagtgccggagaactggaaagtggaaacgccggtgaaccagccaag 496

                      
Query: 661 ctcatcaggca 671
            | ||||||||
Sbjct: 497 ttgatcaggca 507

---

>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete
           cds
          Length = 1674

 Score =  226 bits (114), Expect = 7e-56
 Identities = 240/282 (85%)
 Strand = Plus / Plus

                                                                       
Query: 379 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 438
           |||||||| ||||||||||| || || ||  ||||| |||| |||||||   |||  || 
Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455

                                                                       
Query: 439 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 498
           |||||||||||||||||||||||||||||||||||||| ||  || |||| |||||| ||
Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515

                                                                       
Query: 499 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 558
           |   |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575

                                                                       
Query: 559 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 618
           ||||||||||||||||| ||||| |||   |||||||| ||||||||||| |||||||||
Sbjct: 576 aaatcattccagtgtgaacttgtcttcagaaagatgggaatcaaccccattatgatgagt 635

                                                     
Query: 619 gccggagagctggagagtgggaacgctggagagccagccaag 660
           || |||||  |||| ||||| || || |||||||||||||||
Sbjct: 636 gctggagaattggaaagtggaaatgcaggagagccagccaag 677

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 736 atgatgagtgctggagagcttgagagtggaaacgcaggaga 776

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 736 atgatgagtgctggagagcttgagagtggaaacgcaggaga 776

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 765 atgatgagtgctggagagcttgagagtggaaacgcaggaga 805

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
           (At2g39730) mRNA, complete cds
          Length = 1697

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 647 atgatgagtgctggagagcttgagagtggaaacgcaggaga 687

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 561

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 562 atgatgagtgctggagagcttgagagtggaaacgcaggaga 602

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 650 atgatgagtgctggagagcttgagagtggaaacgcaggaga 690

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 638

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 639 atgatgagtgctggagagcttgagagtggaaacgcaggaga 679

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 647 atgatgagtgctggagagcttgagagtggaaacgcaggaga 687

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete
           cds
          Length = 1674

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 650 atgatgagtgctggagagcttgagagtggaaacgcaggaga 690

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score =  224 bits (113), Expect = 3e-55
 Identities = 239/281 (85%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| 
Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| |||
Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764

                                                    
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggaga 650
           ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 765 atgatgagtgctggagagcttgagagtggaaacgcaggaga 805

---

>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds
          Length = 1634

 Score =  224 bits (113), Expect = 3e-55
 Identities = 203/233 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 498
           |||||||| ||||| |||||||||||||||||||| || ||  || ||||||||||||||
Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535

                                                                       
Query: 499 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 558
           || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| 
Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595

                                                                       
Query: 559 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 618
           ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 596 aaatctttccagtgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 655

                                                                
Query: 619 gccggagagctggagagtgggaacgctggagagccagccaagctcatcaggca 671
           ||||||||  ||||||| || ||||| |||||||| || ||| | ||||||||
Sbjct: 656 gccggagaattggagagcggcaacgcaggagagcccgcgaagttgatcaggca 708

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
           complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score =  218 bits (110), Expect = 2e-53
 Identities = 224/262 (85%)
 Strand = Plus / Plus

                                                                       
Query: 410 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 469
           ||||| |||| ||||||| |||||  || |||||||| || || || |||||||||||||
Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490

                                                                       
Query: 470 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 529
           |||| |||||  || |||| |||||| |||  || || ||||||||||| || || ||||
Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550

                                                                       
Query: 530 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 589
           ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||
Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610

                                                                       
Query: 590 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 649
           ||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagctggaaagtggaaatgcaggag 670

                                 
Query: 650 agccagccaagctcatcaggca 671
           | || |||||||| ||||||||
Sbjct: 671 aacctgccaagctgatcaggca 692

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score =  218 bits (110), Expect = 2e-53
 Identities = 224/262 (85%)
 Strand = Plus / Plus

                                                                       
Query: 410 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 469
           ||||| |||| ||||||| |||||  || |||||||| || || || |||||||||||||
Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490

                                                                       
Query: 470 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 529
           |||| |||||  || |||| |||||| |||  || || ||||||||||| || || ||||
Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550

                                                                       
Query: 530 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 589
           ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||
Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610

                                                                       
Query: 590 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 649
           ||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || ||||
Sbjct: 611 agatgggaatcaaccccatcatgatgagtgctggagagctggaaagtggaaatgcaggag 670

                                 
Query: 650 agccagccaagctcatcaggca 671
           |||| || ||||| ||||||||
Sbjct: 671 agcccgcaaagctgatcaggca 692

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score =  214 bits (108), Expect = 3e-52
 Identities = 201/232 (86%)
 Strand = Plus / Plus

                                                                       
Query: 440 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 499
           ||||||| || ||||| || ||||||||||||||||| ||  || |||| |||||| |||
Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689

                                                                       
Query: 500 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 559
            | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |
Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749

                                                                       
Query: 560 aatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtg 619
           |||| ||||| ||||||||||||||||||||| | || || |||||||||||||||||||
Sbjct: 750 aatccttccaatgtgagcttgtgttcgccaagttaggaataaaccccatcatgatgagtg 809

                                                               
Query: 620 ccggagagctggagagtgggaacgctggagagccagccaagctcatcaggca 671
           |||||||  |||| ||||| || || ||||||||||| ||| | ||||||||
Sbjct: 810 ccggagaattggaaagtggaaatgcaggagagccagctaagttgatcaggca 861

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score =  210 bits (106), Expect = 4e-51
 Identities = 190/218 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 498
           |||||||| |||||||||||  |||||||||||||||| ||  || |||| |||||||||
Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528

                                                                       
Query: 499 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 558
           ||| |||||||||||||| | || |||||  | |||||||||||||||||||| ||||||
Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588

                                                                       
Query: 559 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 618
           || || ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 589 aagtctttccaatgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagt 648

                                                 
Query: 619 gccggagagctggagagtgggaacgctggagagccagc 656
           || |||||| |||| ||||| || || |||||||||||
Sbjct: 649 gctggagagttggaaagtggaaatgccggagagccagc 686



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 259 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 317
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds
          Length = 1627

 Score =  204 bits (103), Expect = 3e-49
 Identities = 211/247 (85%)
 Strand = Plus / Plus

                                                                       
Query: 410 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 469
           ||||| |||| ||||||| || ||  || |||||||| ||||| |||||  |||||||||
Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495

                                                                       
Query: 470 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 529
           ||||||| ||  || |||| |||||||||||| |||||||||||||| | || |||||  
Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555

                                                                       
Query: 530 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 589
           | ||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||
Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttgtctttgcca 615

                                                                       
Query: 590 agatgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggag 649
           ||||||| ||||||||||||||||||||||| |||||| |||| ||||| || || ||||
Sbjct: 616 agatgggaatcaaccccatcatgatgagtgctggagagttggaaagtggaaatgccggag 675

                  
Query: 650 agccagc 656
           |||||||
Sbjct: 676 agccagc 682

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score =  202 bits (102), Expect = 1e-48
 Identities = 201/234 (85%)
 Strand = Plus / Plus

                                                                       
Query: 438 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 497
           ||||||||| || ||| |||||||||||||| ||||||| ||  || |||| |||| | |
Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573

                                                                       
Query: 498 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 557
           || | |||| ||||||||| | || || ||||||||||| ||||||||||| ||||||||
Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633

                                                                       
Query: 558 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgag 617
            ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 634 taaatccttccaatgtgagcttgtgttcgccaagatgggaatcaaccccatcatgatgag 693

                                                                 
Query: 618 tgccggagagctggagagtgggaacgctggagagccagccaagctcatcaggca 671
           ||| |||||  |||| ||||| ||||| ||||||||||| ||| | ||||||||
Sbjct: 694 tgcgggagaattggaaagtggaaacgcaggagagccagcaaagttgatcaggca 747

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score =  194 bits (98), Expect = 3e-46
 Identities = 238/282 (84%), Gaps = 2/282 (0%)
 Strand = Plus / Plus

                                                                       
Query: 370 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 429
           ||||| ||||| ||||| ||||| ||||| |||||  || ||||| |||| |||||||  
Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450

                                                                       
Query: 430 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 489
           ||||  || || ||||| ||||||||||||||||||||||||||||| ||  || |||| 
Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatct-ggggaggcaa 548
           |||||| |||| ||||| ||||||||| | ||||| || |||||  ||| ||||||||||
Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggc-tctcggggaggcaa 569

                                                                       
Query: 549 gggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccat 608
            |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||| ||
Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaat 629

                                                     
Query: 609 catgatgagtgccggagagctggagagtgggaacgctggaga 650
           |||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 630 catgatgagtgctggagagcttgagagtggaaacgcaggaga 671

---

>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds
          Length = 1656

 Score =  192 bits (97), Expect = 1e-45
 Identities = 190/221 (85%)
 Strand = Plus / Plus

                                                                       
Query: 436 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 495
           ||||||||||| || ||||||||||||||||| |||||||| ||  || |||| ||||||
Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493

                                                                       
Query: 496 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 555
            ||||  |||||||||||||| | ||||||||||||||| | ||||||||||| ||||||
Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553

                                                                       
Query: 556 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatg 615
           || ||||||||||| ||||||||||| |||   |||||||| ||||||||||| ||||||
Sbjct: 554 ggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatg 613

                                                    
Query: 616 agtgccggagagctggagagtgggaacgctggagagccagc 656
           ||||| |||||  |||| ||||| || || |||||||||||
Sbjct: 614 agtgctggagaattggaaagtggaaatgcaggagagccagc 654

---

>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase
           (pJQ4)
          Length = 1655

 Score =  188 bits (95), Expect = 2e-44
 Identities = 185/215 (86%)
 Strand = Plus / Plus

                                                                       
Query: 439 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 498
           ||||||||||||||| |||||||||||||||||||||| ||  || |||| |||||| ||
Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485

                                                                       
Query: 499 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 558
           |   |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| 
Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545

                                                                       
Query: 559 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 618
           ||||| ||||||||||||||||| |||   |||||||| |||||||| || |||||||||
Sbjct: 546 aaatctttccagtgtgagcttgtcttcagaaagatgggaatcaaccctattatgatgagt 605

                                              
Query: 619 gccggagagctggagagtgggaacgctggagagcc 653
           ||||||||  |||| ||||| || || ||||||||
Sbjct: 606 gccggagaattggaaagtggaaatgcaggagagcc 640

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score =  167 bits (84), Expect = 6e-38
 Identities = 189/224 (84%)
 Strand = Plus / Plus

                                                                       
Query: 448 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 507
           ||||| ||||| ||||||||||||||||| ||  || |||| |||||||||||||| || 
Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544

                                                                       
Query: 508 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 567
           ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || |||
Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604

                                                                       
Query: 568 cagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagag 627
           ||||| |||||||| || ||||||||| | |||| ||| |||||||||||||||||||| 
Sbjct: 605 cagtgcgagcttgtctttgccaagatgagaatcagccctatcatgatgagtgccggagaa 664

                                                       
Query: 628 ctggagagtgggaacgctggagagccagccaagctcatcaggca 671
            |||| ||||| ||||| ||||| || || ||||| ||||||||
Sbjct: 665 ttggaaagtggaaacgcaggagaacccgcgaagctgatcaggca 708



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 282 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 341
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| |||||||||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score =  163 bits (82), Expect = 9e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 439 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 498
           |||||||||||||||||||||||||||||||||||||| ||  || |||| |||||| | 
Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532

                                                                       
Query: 499 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 558
           ||  |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| 
Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592

                                                                       
Query: 559 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagt 618
           ||||||||||| ||||||||||| |||   |||||||| |||||||| || |||||||||
Sbjct: 593 aaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagt 652

                                                 
Query: 619 gccggagagctggagagtgggaacgctggagagccagc 656
           || |||||  | || ||||| || || |||||||||||
Sbjct: 653 gctggagaattagaaagtggaaatgcaggagagccagc 690

---

>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene)
          Length = 678

 Score =  163 bits (82), Expect = 9e-37
 Identities = 169/198 (85%)
 Strand = Plus / Plus

                                                                       
Query: 441 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 500
           |||||| ||||||||||| ||||||||||||||||| ||  |||| ||||||||||||| 
Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215

                                                                       
Query: 501 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 560
           | |||| ||||||||| | || |||||  | ||||| |||||||||||||||||||||||
Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275

                                                                       
Query: 561 atcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 620
            || ||||| ||||||||||| || || ||  |||| |||||||| || |||||||||||
Sbjct: 276 gtccttccaatgtgagcttgtatttgcaaaattgggaatcaacccaattatgatgagtgc 335

                             
Query: 621 cggagagctggagagtgg 638
           ||| || |||||||||||
Sbjct: 336 cggtgaactggagagtgg 353

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                       
Query: 548 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 607
           |||| ||||||||||| |||||   ||||||||| || ||||||||||| ||||||||||
Sbjct: 7   agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66

                                                            
Query: 608 tcatgatgagtgccggagagctggagagtgggaacgctggagagccagc 656
           ||||||||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 67  tcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagc 115

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score =  105 bits (53), Expect = 2e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                        
Query: 515  agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 574
            |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| ||||
Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297

                             
Query: 575  agcttgtgttcgccaag 591
            |||||||||||||||||
Sbjct: 2298 agcttgtgttcgccaag 2314



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 603  ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 662
            ||||||||||||||||||||||||  |||| ||||| || || ||||||||||| ||| |
Sbjct: 2421 ccccatcatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaagtt 2480

                     
Query: 663  catcaggca 671
             ||||||||
Sbjct: 2481 gatcaggca 2489



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                        
Query: 438  cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 497
            ||||||||| || ||||| || ||||||||||||||||| ||  || |||| |||||| |
Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126

                               
Query: 498  gaccctgcccaacatcaag 516
            || | ||||||||||||||
Sbjct: 2127 gaacttgcccaacatcaag 2145

---

>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase pseudogene, partial sequence
          Length = 472

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 106/122 (86%), Gaps = 2/122 (1%)
 Strand = Plus / Plus

                                                                       
Query: 547 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 606
           ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||  || 
Sbjct: 1   aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60

                                                                       
Query: 607 atcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagctcatc 666
           ||||||||||||||||||||  | || ||| |||||||| |||||||||| |||||||||
Sbjct: 61  atcatgatgagtgccggagaattagaaagt-ggaacgct-gagagccagctaagctcatc 118

             
Query: 667 ag 668
           ||
Sbjct: 119 ag 120

---

>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds
          Length = 1216

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                       
Query: 523 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 582
           ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| 
Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245

                               
Query: 583 ttcgccaagatgggcatcaa 602
           || ||||||||||| |||||
Sbjct: 246 tttgccaagatgggaatcaa 265



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 439 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 498
           |||||||| ||||| |||||||||||||||||||| || ||  || ||||||||||||||
Sbjct: 6   ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65

             
Query: 499 ac 500
           ||
Sbjct: 66  ac 67



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                       
Query: 603 ccccatcatgatgagtgccggagagctggagagtgggaacgctggagagccagccaagct 662
           ||||||||||||||||||||||||  ||||||| || ||||| |||||||| || ||| |
Sbjct: 467 ccccatcatgatgagtgccggagaattggagagcggcaacgcaggagagcccgcgaagtt 526

                    
Query: 663 catcaggca 671
            ||||||||
Sbjct: 527 gatcaggca 535

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 137/167 (82%)
 Strand = Plus / Plus

                                                                       
Query: 490 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 549
           |||||| ||||||| || ||||| ||| | || |||||  ||||| | |||||||| || 
Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581

                                                                       
Query: 550 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 609
           ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || 
Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccctatt 641

                                                          
Query: 610 atgatgagtgccggagagctggagagtgggaacgctggagagccagc 656
           ||||||||||| || ||  | || |||||||| || |||||||||||
Sbjct: 642 atgatgagtgctggggaattagaaagtgggaatgcaggagagccagc 688

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 520   ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 579
             ||||| || |||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674

                                    
Query: 580   gtgttcgccaagatgggcatcaa 602
             ||  | ||||||||||| |||||
Sbjct: 14673 gtcatggccaagatgggtatcaa 14651



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 442   tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 501
             ||||| ||||||||||||||||||||||||||||| ||  || |||| |||||| |||| 
Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851

                            
Query: 502   ctgcccaacatcaag 516
             ||||| |||||||||
Sbjct: 14850 ctgcctaacatcaag 14836



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 607   atcatgatgagtgccggagagctggagagtgggaacgctggaga 650
             |||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 14555 atcatgatgagtgctggagagcttgagagtggaaacgcaggaga 14512

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                        
Query: 520  ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 579
            ||||| || |||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609

                                   
Query: 580  gtgttcgccaagatgggcatcaa 602
            ||  | ||||||||||| |||||
Sbjct: 2610 gtcatggccaagatgggtatcaa 2632



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                        
Query: 442  tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 501
            ||||| ||||||||||||||||||||||||||||| ||  || |||| |||||| |||| 
Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432

                           
Query: 502  ctgcccaacatcaag 516
            ||||| |||||||||
Sbjct: 2433 ctgcctaacatcaag 2447



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 607  atcatgatgagtgccggagagctggagagtgggaacgctggaga 650
            |||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 2728 atcatgatgagtgctggagagcttgagagtggaaacgcaggaga 2771

---

>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence
          Length = 108028

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                        
Query: 514  aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 573
            ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || |||
Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482

                                        
Query: 574  gagcttgtgttcgccaagatgggcatca 601
            |||||||| || ||||||||||| ||||
Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 610  atgatgagtgccggagagctggagagtgggaacgctggagagcc 653
            |||||||||||||||||  |||| ||||| || || ||||||||
Sbjct: 7262 atgatgagtgccggagaattggaaagtggaaatgcaggagagcc 7219

---

>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence
          Length = 105218

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                          
Query: 532    ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 591
              |||||||||||||| || |||||||||||||| |||||   ||||||||| || ||||||
Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874

                         
Query: 592    atgggcatcaa 602
              |||||||||||
Sbjct: 104873 atgggcatcaa 104863



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 607    atcatgatgagtgccggagagctggagagtgggaacgctggagagccagc 656
              |||||||||||||| |||||||| || ||||| || || ||||| |||||
Sbjct: 104183 atcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagc 104134

---

>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence
          Length = 163160

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                         
Query: 532   ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 591
             |||||||||||||| || |||||||||||||| |||||   ||||||||| || ||||||
Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899

                        
Query: 592   atgggcatcaa 602
             |||||||||||
Sbjct: 83898 atgggcatcaa 83888



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                     
Query: 421   gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 476
             |||||||||||||  || || ||||| || |||||||| |||||||||||||||||
Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 607   atcatgatgagtgccggagagctggagagtgggaacgctggagagccagc 656
             |||||||||||||| |||||||| || ||||| || || ||||| |||||
Sbjct: 83208 atcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagc 83159

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 102/125 (81%)
 Strand = Plus / Plus

                                                                        
Query: 436  ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 495
            |||||||||||| ||||||||||| |||| ||| |     ||||| |  |||| ||||||
Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187

                                                                        
Query: 496  atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 555
            |||  ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || 
Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247

                 
Query: 556  ggaaa 560
            |||||
Sbjct: 1248 ggaaa 1252



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                        
Query: 593  tgggcatcaaccccatcatgatgagtgccggagagctggagagtgggaacgctggagagc 652
            ||||||||| ||||||| | |||  |||||| |||||||||  ||| ||||| || ||||
Sbjct: 1443 tgggcatcagccccatcgtcatgtctgccggtgagctggagtctggtaacgccggtgagc 1502

                          
Query: 653  cagccaagctcatc 666
            | ||||||||||||
Sbjct: 1503 ccgccaagctcatc 1516

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
           activase mRNA, complete cds
          Length = 1693

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 485 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 544
           |||| |||||||||  ||||||||| |||||| | || |||||  ||||||||||||| |
Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465

                  
Query: 545 gcaaggg 551
           |||||||
Sbjct: 466 gcaaggg 472

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                               
Query: 501  cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 551
            ||||||||| |||||| | || |||||  ||||||||||||| ||||||||
Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 284     ccgacgaccagcaggacatcacc 306
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 326     actcgctcttccaggcgcccac 347
               ||||||||||||||||||||||
Sbjct: 2553524 actcgctcttccaggcgcccac 2553503

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 141    gaagaagctcaagaagcaggtg 162
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978

---

>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  cagcacagagatggctgctgc 89
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511

---

>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  cagcacagagatggctgctgc 89
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521

---

>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  cagcacagagatggctgctgc 89
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575

---

>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  cagcacagagatggctgctgc 89
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912

---

>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  cagcacagagatggctgctgc 89
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 216     catggcagcggagaacatcg 235
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875

---

>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 280  atctccgacgaccagcaggacatc 303
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    gcagcggagaacatcgacga 239
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 343  cccacgggcgacggcacccacgag 366
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  gcaagagctccaaggccaac 204
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747

---

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     ctgccttctcctccaccgtc 105
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842

---

>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 500     ccctgcccaacatcaagatc 519
               ||||||||||||||||||||
Sbjct: 1130357 ccctgcccaacatcaagatc 1130376

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 216     catggcagcggagaacatcg 235
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 343 cccacgggcgacggcacccacgag 366
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703

---

>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   ctgctgccttctcctccacc 102
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989

---

>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  ctgctgccttctcctccacc 102
           ||||||||||||||||||||
Sbjct: 65  ctgctgccttctcctccacc 46

---

>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  ctgctgccttctcctccacc 102
           ||||||||||||||||||||
Sbjct: 65  ctgctgccttctcctccacc 46

---

>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  gaagaagctcaagaagcagg 160
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404

---

>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete
             sequence
          Length = 101284

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   ttccagtgtgagcttgtgtt 584
             ||||||||||||||||||||
Sbjct: 97287 ttccagtgtgagcttgtgtt 97268

---

>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213

---

>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence
          Length = 193170

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 436    ggcttctacatcgctcctgctttc 459
              ||||||| ||||||||||||||||
Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 343    cccacgggcgacggcacccacgag 366
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     tggctgctgccttctcctcc 99
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035

---

>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   ccagagggaagggcatcgtg 324
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967

---

>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698

---

>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551

---

>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence
          Length = 141442

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   gtccatctctccaaaaactt 494
             ||||||||||||||||||||
Sbjct: 63248 gtccatctctccaaaaactt 63229

---

>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     acagagatggctgctgcctt 92
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143

---

>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  gcaagagctccaaggccaac 204
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   ccagagggaagggcatcgtg 324
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230

---

>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 56     aaggtcgaccaagcagcacagagatggctgctgccttctc 95
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719

---

>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the
            complete sequence
          Length = 10900

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 500  ccctgcccaacatcaagatc 519
            ||||||||||||||||||||
Sbjct: 7760 ccctgcccaacatcaagatc 7741

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 343 cccacgggcgacggcacccacgag 366
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
             V, complete sequence
          Length = 130299

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   caaggccaacaggttcacagtcat 218
             ||||||||||||||||| ||||||
Sbjct: 13824 caaggccaacaggttcagagtcat 13847

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 276     cgatatctccgacgaccagc 295
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 500     ccctgcccaacatcaagatc 519
               ||||||||||||||||||||
Sbjct: 1147720 ccctgcccaacatcaagatc 1147739

---

>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302
           (ENSANGG00000011813), partial mRNA
          Length = 1773

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 584 tcgccaagatgggcatcaac 603
           ||||||||||||||||||||
Sbjct: 641 tcgccaagatgggcatcaac 660

---

>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete
              sequence
          Length = 219072

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 436    ggcttctacatcgctcctgctttc 459
              ||||||| ||||||||||||||||
Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848

---

>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   caaggccaacaggttcacagtcat 218
             ||||||||||||||||| ||||||
Sbjct: 27506 caaggccaacaggttcagagtcat 27483

---

>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   aagaagctcaagaagcaggt 161
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650

---

>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    tggctgctgccttctcctcc 99
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919

---

>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689

---

>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete
              sequences
          Length = 162128

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 56     aaggtcgaccaagcagcacagagatggctgctgccttctc 95
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173

---

>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 500     ccctgcccaacatcaagatc 519
               ||||||||||||||||||||
Sbjct: 1144872 ccctgcccaacatcaagatc 1144891

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     gagatggctgctgccttctcctcc 99
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822

---

>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1
            outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ),
            and LpxA (lpxA) genes, complete cds
          Length = 8895

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 500  ccctgcccaacatcaagatc 519
            ||||||||||||||||||||
Sbjct: 8238 ccctgcccaacatcaagatc 8219

---

>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete
             sequence
          Length = 208153

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 629   tggagagtgggaacgctgga 648
             ||||||||||||||||||||
Sbjct: 90247 tggagagtgggaacgctgga 90228

---

>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 343 cccacgggcgacggcacccacgag 366
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tggctgctgccttctcctcc 99
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,445,144
Number of Sequences: 3902068
Number of extensions: 5445144
Number of successful extensions: 101864
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101240
Number of HSP's gapped (non-prelim): 611
length of query: 672
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 649
effective length of database: 17,143,297,704
effective search space: 11126000209896
effective search space used: 11126000209896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---