Clone Name | bah62m03 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_479750.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3078 Score = 587 bits (296), Expect = e-164 Identities = 496/562 (88%), Gaps = 3/562 (0%) Strand = Plus / Plus Query: 2 gtggagagggcagttgctgcccctgtgaatcgcaggcgtgctccgaatggtgtggcagag 61 ||||||||| ||||||| || |||| |||| | ||||||||||||||||| | ||| ||| Sbjct: 797 gtggagaggccagttgccgcgcctgcgaattggaggcgtgctccgaatggcgcggcggag 856 Query: 62 caagaaccaaggagtggtggcatcagagctgaggcgaagccaaggatcatagatgt---g 118 ||||| || ||||||||||| | || ||||||||| || ||||| | |||||| | Sbjct: 857 caagagcctaggagtggtggtacaaggagtgaggcgaaaccgaggattacagatgttgtg 916 Query: 119 ccgaatggagtggtggcggagcacgtggcggctggctggccgaggtggctcacggaggtg 178 || ||||||||| || || ||| | ||| ||||||||||| ||||||||||| ||||| Sbjct: 917 cccaatggagtgcagggggggcatgcggcagctggctggccaaggtggctcacagaggtc 976 Query: 179 gcaacagaggcggtccgtgggtggcagcctcgcaaggcagagtccttcgagaagttggac 238 ||| ||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 977 gcagcagaggcagtccgtgggtggcaacctcggaaggcagagtctttcgagaagttggac 1036 Query: 239 aagatagggcaaggtacctacagcagcgtgtacaaagcacgtgatcttgagaatggaaaa 298 ||||||||||||||||| ||||| || || |||||||||||||||||||||| ||||||| Sbjct: 1037 aagatagggcaaggtacatacagtagtgtttacaaagcacgtgatcttgagagtggaaaa 1096 Query: 299 attgtggcacttaagaaagttcgatttgccaatatggatcctgagagtgttcgatttatg 358 ||||||||||||||||||||||| |||||||| ||||| |||||||| || || || ||| Sbjct: 1097 attgtggcacttaagaaagttcggtttgccaacatggaccctgagagcgtgcggttcatg 1156 Query: 359 gcaagggaaattcacatcttaagaagacttgataatccaaatgttattaagcttgaaggt 418 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct: 1157 gcaagggaaattcacatcttaagaagacttgatcacccaaatgttattaagcttgaaggt 1216 Query: 419 ttggtgacatcacgcatgtctagtagcttgtatctcgtgttcgaatacatggagcatgat 478 |||||||| || ||||||||||||||||||||||| || || |||||||||||||||||| Sbjct: 1217 ttggtgacgtcgcgcatgtctagtagcttgtatcttgtatttgaatacatggagcatgat 1276 Query: 479 ctcgcgggacttgctgctacacctggcataaaattcacagaggctcaggtcaagtgttac 538 || ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 1277 ctagcgggacttgcagctacacctggcataaagttcacagagcctcaggtcaagtgttac 1336 Query: 539 atgcagcagctactgtctggac 560 ||||| || ||||| ||||||| Sbjct: 1337 atgcaacaactactctctggac 1358
>dbj|AK072696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138G06, full insert sequence Length = 3082 Score = 579 bits (292), Expect = e-162 Identities = 495/562 (88%), Gaps = 3/562 (0%) Strand = Plus / Plus Query: 2 gtggagagggcagttgctgcccctgtgaatcgcaggcgtgctccgaatggtgtggcagag 61 ||||||||| ||||||| || |||| |||| | ||||||||||||||||| | ||| ||| Sbjct: 796 gtggagaggccagttgccgcgcctgcgaattggaggcgtgctccgaatggcgcggcggag 855 Query: 62 caagaaccaaggagtggtggcatcagagctgaggcgaagccaaggatcatagatgt---g 118 ||||| || ||||||||||| | || ||||||||| || ||||| | |||||| | Sbjct: 856 caagagcctaggagtggtggtacaaggagtgaggcgaaaccgaggattacagatgttgtg 915 Query: 119 ccgaatggagtggtggcggagcacgtggcggctggctggccgaggtggctcacggaggtg 178 || ||||||||| || || ||| | ||| ||||||||||| ||||||||||| ||||| Sbjct: 916 cccaatggagtgcagggggggcatgcggcagctggctggccaaggtggctcacagaggtc 975 Query: 179 gcaacagaggcggtccgtgggtggcagcctcgcaaggcagagtccttcgagaagttggac 238 ||| ||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 976 gcagcagaggcagtccgtgggtggcaacctcggaaggcagagtctttcgagaagttggac 1035 Query: 239 aagatagggcaaggtacctacagcagcgtgtacaaagcacgtgatcttgagaatggaaaa 298 ||||||||||||||||| ||||| || || |||||||||||||||||||||| ||||||| Sbjct: 1036 aagatagggcaaggtacatacagtagtgtttacaaagcacgtgatcttgagagtggaaaa 1095 Query: 299 attgtggcacttaagaaagttcgatttgccaatatggatcctgagagtgttcgatttatg 358 ||||||||||||||||||||||| |||||||| ||||| | |||||| || || || ||| Sbjct: 1096 attgtggcacttaagaaagttcggtttgccaacatggaccgtgagagcgtgcggttcatg 1155 Query: 359 gcaagggaaattcacatcttaagaagacttgataatccaaatgttattaagcttgaaggt 418 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct: 1156 gcaagggaaattcacatcttaagaagacttgatcacccaaatgttattaagcttgaaggt 1215 Query: 419 ttggtgacatcacgcatgtctagtagcttgtatctcgtgttcgaatacatggagcatgat 478 |||||||| || ||||||||||||||||||||||| || || |||||||||||||||||| Sbjct: 1216 ttggtgacgtcgcgcatgtctagtagcttgtatcttgtatttgaatacatggagcatgat 1275 Query: 479 ctcgcgggacttgctgctacacctggcataaaattcacagaggctcaggtcaagtgttac 538 || ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 1276 ctagcgggacttgcagctacacctggcataaagttcacagagcctcaggtcaagtgttac 1335 Query: 539 atgcagcagctactgtctggac 560 ||||| || ||||| ||||||| Sbjct: 1336 atgcaacaactactctctggac 1357
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 391 bits (197), Expect = e-105 Identities = 266/289 (92%) Strand = Plus / Minus Query: 240 agatagggcaaggtacctacagcagcgtgtacaaagcacgtgatcttgagaatggaaaaa 299 |||||||||||||||| ||||| || || |||||||||||||||||||||| |||||||| Sbjct: 659814 agatagggcaaggtacatacagtagtgtttacaaagcacgtgatcttgagagtggaaaaa 659755 Query: 300 ttgtggcacttaagaaagttcgatttgccaatatggatcctgagagtgttcgatttatgg 359 |||||||||||||||||||||| |||||||| ||||| |||||||| || || || |||| Sbjct: 659754 ttgtggcacttaagaaagttcggtttgccaacatggaccctgagagcgtgcggttcatgg 659695 Query: 360 caagggaaattcacatcttaagaagacttgataatccaaatgttattaagcttgaaggtt 419 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 659694 caagggaaattcacatcttaagaagacttgatcacccaaatgttattaagcttgaaggtt 659635 Query: 420 tggtgacatcacgcatgtctagtagcttgtatctcgtgttcgaatacatggagcatgatc 479 ||||||| || ||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct: 659634 tggtgacgtcgcgcatgtctagtagcttgtatcttgtatttgaatacatggagcatgatc 659575 Query: 480 tcgcgggacttgctgctacacctggcataaaattcacagaggctcaggt 528 | ||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 659574 tagcgggacttgcagctacacctggcataaagttcacagagcctcaggt 659526 Score = 161 bits (81), Expect = 3e-36 Identities = 203/243 (83%), Gaps = 3/243 (1%) Strand = Plus / Minus Query: 2 gtggagagggcagttgctgcccctgtgaatcgcaggcgtgctccgaatggtgtggcagag 61 ||||||||| ||||||| || |||| |||| | ||||||||||||||||| | ||| ||| Sbjct: 660390 gtggagaggccagttgccgcgcctgcgaattggaggcgtgctccgaatggcgcggcggag 660331 Query: 62 caagaaccaaggagtggtggcatcagagctgaggcgaagccaaggatcatagatgt---g 118 ||||| || ||||||||||| | || ||||||||| || ||||| | |||||| | Sbjct: 660330 caagagcctaggagtggtggtacaaggagtgaggcgaaaccgaggattacagatgttgtg 660271 Query: 119 ccgaatggagtggtggcggagcacgtggcggctggctggccgaggtggctcacggaggtg 178 || ||||||||| || || ||| | ||| ||||||||||| ||||||||||| ||||| Sbjct: 660270 cccaatggagtgcagggggggcatgcggcagctggctggccaaggtggctcacagaggtc 660211 Query: 179 gcaacagaggcggtccgtgggtggcagcctcgcaaggcagagtccttcgagaagttggac 238 ||| ||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 660210 gcagcagaggcagtccgtgggtggcaacctcggaaggcagagtctttcgagaagttggac 660151 Query: 239 aag 241 ||| Sbjct: 660150 aag 660148 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 525 aggtcaagtgttacatgcagcagctactgtctggac 560 ||||||||||||||||||| || ||||| ||||||| Sbjct: 659447 aggtcaagtgttacatgcaacaactactctctggac 659412
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 391 bits (197), Expect = e-105 Identities = 266/289 (92%) Strand = Plus / Minus Query: 240 agatagggcaaggtacctacagcagcgtgtacaaagcacgtgatcttgagaatggaaaaa 299 |||||||||||||||| ||||| || || |||||||||||||||||||||| |||||||| Sbjct: 87192 agatagggcaaggtacatacagtagtgtttacaaagcacgtgatcttgagagtggaaaaa 87133 Query: 300 ttgtggcacttaagaaagttcgatttgccaatatggatcctgagagtgttcgatttatgg 359 |||||||||||||||||||||| |||||||| ||||| |||||||| || || || |||| Sbjct: 87132 ttgtggcacttaagaaagttcggtttgccaacatggaccctgagagcgtgcggttcatgg 87073 Query: 360 caagggaaattcacatcttaagaagacttgataatccaaatgttattaagcttgaaggtt 419 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 87072 caagggaaattcacatcttaagaagacttgatcacccaaatgttattaagcttgaaggtt 87013 Query: 420 tggtgacatcacgcatgtctagtagcttgtatctcgtgttcgaatacatggagcatgatc 479 ||||||| || ||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct: 87012 tggtgacgtcgcgcatgtctagtagcttgtatcttgtatttgaatacatggagcatgatc 86953 Query: 480 tcgcgggacttgctgctacacctggcataaaattcacagaggctcaggt 528 | ||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 86952 tagcgggacttgcagctacacctggcataaagttcacagagcctcaggt 86904 Score = 161 bits (81), Expect = 3e-36 Identities = 203/243 (83%), Gaps = 3/243 (1%) Strand = Plus / Minus Query: 2 gtggagagggcagttgctgcccctgtgaatcgcaggcgtgctccgaatggtgtggcagag 61 ||||||||| ||||||| || |||| |||| | ||||||||||||||||| | ||| ||| Sbjct: 87768 gtggagaggccagttgccgcgcctgcgaattggaggcgtgctccgaatggcgcggcggag 87709 Query: 62 caagaaccaaggagtggtggcatcagagctgaggcgaagccaaggatcatagatgt---g 118 ||||| || ||||||||||| | || ||||||||| || ||||| | |||||| | Sbjct: 87708 caagagcctaggagtggtggtacaaggagtgaggcgaaaccgaggattacagatgttgtg 87649 Query: 119 ccgaatggagtggtggcggagcacgtggcggctggctggccgaggtggctcacggaggtg 178 || ||||||||| || || ||| | ||| ||||||||||| ||||||||||| ||||| Sbjct: 87648 cccaatggagtgcagggggggcatgcggcagctggctggccaaggtggctcacagaggtc 87589 Query: 179 gcaacagaggcggtccgtgggtggcagcctcgcaaggcagagtccttcgagaagttggac 238 ||| ||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 87588 gcagcagaggcagtccgtgggtggcaacctcggaaggcagagtctttcgagaagttggac 87529 Query: 239 aag 241 ||| Sbjct: 87528 aag 87526 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 525 aggtcaagtgttacatgcagcagctactgtctggac 560 ||||||||||||||||||| || ||||| ||||||| Sbjct: 86825 aggtcaagtgttacatgcaacaactactctctggac 86790
>ref|NM_105821.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G71530 transcript variant AT1G71530.1 mRNA, complete cds Length = 2883 Score = 89.7 bits (45), Expect = 9e-15 Identities = 129/157 (82%) Strand = Plus / Plus Query: 215 gcagagtccttcgagaagttggacaagatagggcaaggtacctacagcagcgtgtacaaa 274 ||||||||||| |||||||| ||||| || || || || || |||||||||||||||||| Sbjct: 629 gcagagtcctttgagaagttagacaaaattggacaggggacttacagcagcgtgtacaaa 688 Query: 275 gcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgatttgccaatatg 334 || | || ||||| | || || |||||||| | ||||||||||| |||| || ||| Sbjct: 689 gctagagaccttgaaacggggaagattgtggcgatgaagaaagttcggtttgtgaacatg 748 Query: 335 gatcctgagagtgttcgatttatggcaagggaaattc 371 ||||| ||||||||||| |||||||| ||||| |||| Sbjct: 749 gatccagagagtgttcggtttatggccagggagattc 785
>ref|NM_202395.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G71530 transcript variant AT1G71530.2 mRNA, complete cds Length = 2964 Score = 89.7 bits (45), Expect = 9e-15 Identities = 129/157 (82%) Strand = Plus / Plus Query: 215 gcagagtccttcgagaagttggacaagatagggcaaggtacctacagcagcgtgtacaaa 274 ||||||||||| |||||||| ||||| || || || || || |||||||||||||||||| Sbjct: 629 gcagagtcctttgagaagttagacaaaattggacaggggacttacagcagcgtgtacaaa 688 Query: 275 gcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgatttgccaatatg 334 || | || ||||| | || || |||||||| | ||||||||||| |||| || ||| Sbjct: 689 gctagagaccttgaaacggggaagattgtggcgatgaagaaagttcggtttgtgaacatg 748 Query: 335 gatcctgagagtgttcgatttatggcaagggaaattc 371 ||||| ||||||||||| |||||||| ||||| |||| Sbjct: 749 gatccagagagtgttcggtttatggccagggagattc 785
>emb|BX815317.1|CNS0AAL7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZC09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2444 Score = 89.7 bits (45), Expect = 9e-15 Identities = 129/157 (82%) Strand = Plus / Plus Query: 215 gcagagtccttcgagaagttggacaagatagggcaaggtacctacagcagcgtgtacaaa 274 ||||||||||| |||||||| ||||| || || || || || |||||||||||||||||| Sbjct: 623 gcagagtcctttgagaagttagacaaaattggacaggggacttacagcagcgtgtacaaa 682 Query: 275 gcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgatttgccaatatg 334 || | || ||||| | || || |||||||| | ||||||||||| |||| || ||| Sbjct: 683 gctagagaccttgaaacggggaagattgtggcgatgaagaaagttcggtttgtgaacatg 742 Query: 335 gatcctgagagtgttcgatttatggcaagggaaattc 371 ||||| ||||||||||| |||||||| ||||| |||| Sbjct: 743 gatccagagagtgttcggtttatggccagggagattc 779
>ref|NM_104567.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G57700 mRNA, complete cds Length = 2061 Score = 79.8 bits (40), Expect = 9e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 299 attgtggcacttaagaaagttcgatttgccaatatggatcctgagagtgttcgatttatg 358 ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| | |||||| Sbjct: 511 attgttgcacttaagaaggttcggtttgctaatatggatcctgagagtgtgaggtttatg 570 Query: 359 gcaagggaaatt 370 ||||| |||||| Sbjct: 571 gcaagagaaatt 582
>gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genomic sequence, complete sequence Length = 90448 Score = 79.8 bits (40), Expect = 9e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 299 attgtggcacttaagaaagttcgatttgccaatatggatcctgagagtgttcgatttatg 358 ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| | |||||| Sbjct: 62291 attgttgcacttaagaaggttcggtttgctaatatggatcctgagagtgtgaggtttatg 62350 Query: 359 gcaagggaaatt 370 ||||| |||||| Sbjct: 62351 gcaagagaaatt 62362
>ref|XM_479002.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2944 Score = 71.9 bits (36), Expect = 2e-09 Identities = 171/216 (79%) Strand = Plus / Plus Query: 206 cctcgcaaggcagagtccttcgagaagttggacaagatagggcaaggtacctacagcagc 265 |||| |||||| || |||||||||||| |||| ||| | |||||||| ||||| ||||| Sbjct: 648 cctctcaaggctgactccttcgagaagctggagaaggttgggcaaggcacctatagcagt 707 Query: 266 gtgtacaaagcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgattt 325 || | | ||||| || ||||| | |||||| ||||| || | ||||| || || ||| Sbjct: 708 gtatttagggcacgggaacttgatactggaaagattgtcgccttgaagaaggtgcggttt 767 Query: 326 gccaatatggatcctgagagtgttcgatttatggcaagggaaattcacatcttaagaaga 385 | |||| | || || || |||||| |||| ||||||||||| || || || || ||||| Sbjct: 768 gacaattttgagccagaaagtgttagattcatggcaagggagatacaaatattgagaagg 827 Query: 386 cttgataatccaaatgttattaagcttgaaggtttg 421 || ||| ||||||||||||| ||||| ||||||||| Sbjct: 828 ctcgatcatccaaatgttatgaagctagaaggtttg 863
>dbj|AK067238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G09, full insert sequence Length = 2945 Score = 71.9 bits (36), Expect = 2e-09 Identities = 171/216 (79%) Strand = Plus / Plus Query: 206 cctcgcaaggcagagtccttcgagaagttggacaagatagggcaaggtacctacagcagc 265 |||| |||||| || |||||||||||| |||| ||| | |||||||| ||||| ||||| Sbjct: 648 cctctcaaggctgactccttcgagaagctggagaaggttgggcaaggcacctatagcagt 707 Query: 266 gtgtacaaagcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgattt 325 || | | ||||| || ||||| | |||||| ||||| || | ||||| || || ||| Sbjct: 708 gtatttagggcacgggaacttgatactggaaagattgtcgccttgaagaaggtgcggttt 767 Query: 326 gccaatatggatcctgagagtgttcgatttatggcaagggaaattcacatcttaagaaga 385 | |||| | || || || |||||| |||| ||||||||||| || || || || ||||| Sbjct: 768 gacaattttgagccagaaagtgttagattcatggcaagggagatacaaatattgagaagg 827 Query: 386 cttgataatccaaatgttattaagcttgaaggtttg 421 || ||| ||||||||||||| ||||| ||||||||| Sbjct: 828 ctcgatcatccaaatgttatgaagctagaaggtttg 863
>ref|NM_188289.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2106 Score = 69.9 bits (35), Expect = 9e-09 Identities = 134/167 (80%) Strand = Plus / Plus Query: 386 cttgataatccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagtagc 445 |||||| |||||||| |||||||||| || ||| | || || ||| | |||||| ||||| Sbjct: 502 cttgatcatccaaatattattaagctggagggtctagtaacttcaagaatgtcttgtagc 561 Query: 446 ttgtatctcgtgttcgaatacatggagcatgatctcgcgggacttgctgctacacctggc 505 || ||||| || || || |||||||| ||||| || || ||||| ||| || ||||| Sbjct: 562 ttatatcttgtttttgagtacatggaacatgacctagctggactagcttcttttcctgga 621 Query: 506 ataaaattcacagaggctcaggtcaagtgttacatgcagcagctact 552 | ||||| || ||| ||||||| || |||||||||||||||||||| Sbjct: 622 gtgaaatttactgagtctcaggttaaatgttacatgcagcagctact 668
>gb|AC130801.16| Medicago truncatula clone mth2-12p19, complete sequence Length = 119328 Score = 69.9 bits (35), Expect = 9e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 393 atccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagtagcttgtatc 452 ||||||||||||||||| | ||||||| || ||||| | |||||| |||| |||||| Sbjct: 29490 atccaaatgttattaagttgcaaggtttagttacatctaggatgtcttgtagtttgtatt 29549 Query: 453 tcgtgttcgaatacatggagcatgatctcgcgggacttgctgc 495 | ||||| || ||||||||||||||| | || ||||||||||| Sbjct: 29550 tggtgtttgattacatggagcatgatttagccggacttgctgc 29592
>gb|AC016162.5|AC016162 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence Length = 107579 Score = 69.9 bits (35), Expect = 9e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 257 tacagcagcgtgtacaaagcacgtgatcttgagaatggaaaaattgtggcacttaagaaa 316 |||||||||||||||||||| | || ||||| | || || |||||||| | |||||| Sbjct: 2521 tacagcagcgtgtacaaagctagagaccttgaaacggggaagattgtggcgatgaagaaa 2462 Query: 317 gttcgatttgccaatatggatcctgagagtgttcgatttatggcaagggaaattc 371 ||||| |||| || |||||||| ||||||||||| |||||||| ||||| |||| Sbjct: 2461 gttcggtttgtgaacatggatccagagagtgttcggtttatggccagggagattc 2407
>gb|AC016163.6|AC016163 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence Length = 89653 Score = 69.9 bits (35), Expect = 9e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 257 tacagcagcgtgtacaaagcacgtgatcttgagaatggaaaaattgtggcacttaagaaa 316 |||||||||||||||||||| | || ||||| | || || |||||||| | |||||| Sbjct: 35737 tacagcagcgtgtacaaagctagagaccttgaaacggggaagattgtggcgatgaagaaa 35678 Query: 317 gttcgatttgccaatatggatcctgagagtgttcgatttatggcaagggaaattc 371 ||||| |||| || |||||||| ||||||||||| |||||||| ||||| |||| Sbjct: 35677 gttcggtttgtgaacatggatccagagagtgttcggtttatggccagggagattc 35623
>ref|NM_100832.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G09600 mRNA, complete cds Length = 2145 Score = 61.9 bits (31), Expect = 2e-06 Identities = 159/199 (79%), Gaps = 2/199 (1%) Strand = Plus / Plus Query: 224 ttcgagaagttggacaagatagggcaaggtacctacagcagcgtgtacaaagcacgtgat 283 |||||||||||||| ||||| || ||||| || || ||||| ||||||||||| || || Sbjct: 487 ttcgagaagttggaaaagattggacaagggacgtatagcagtgtgtacaaagcccgggac 546 Query: 284 cttgagaatggaaaaatt-gtggcacttaagaaagttcgatttgccaatatggatcctga 342 || |||| | | |||| || ||||| |||||||| || ||||| ||||||||||| || Sbjct: 547 ctagagac-gaaccaattagttgcactgaagaaagtgcggtttgctaatatggatcccga 605 Query: 343 gagtgttcgatttatggcaagggaaattcacatcttaagaagacttgataatccaaatgt 402 |||||||| || ||||| || ||||| |||| | |||| ||||| |||| ||||| Sbjct: 606 cagtgttcggttcatggctagagaaataatcatccttcgaaggcttgaccatcctaatgt 665 Query: 403 tattaagcttgaaggtttg 421 ||| |||||||| |||||| Sbjct: 666 tatgaagcttgagggtttg 684
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 344 agtgttcgatttatggcaagggaaattcacatcttaagaagacttgataatccaaatgtt 403 |||||| |||| ||||||||||| || || || || ||||| || ||| ||||||||||| Sbjct: 24243593 agtgttagattcatggcaagggagatacaaatattgagaaggctcgatcatccaaatgtt 24243534 Query: 404 attaagcttgaaggtttg 421 || ||||| ||||||||| Sbjct: 24243533 atgaagctagaaggtttg 24243516
>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E05 Length = 137364 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 344 agtgttcgatttatggcaagggaaattcacatcttaagaagacttgataatccaaatgtt 403 |||||| |||| ||||||||||| || || || || ||||| || ||| ||||||||||| Sbjct: 55144 agtgttagattcatggcaagggagatacaaatattgagaaggctcgatcatccaaatgtt 55085 Query: 404 attaagcttgaaggtttg 421 || ||||| ||||||||| Sbjct: 55084 atgaagctagaaggtttg 55067
>dbj|AK122094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125C04, full insert sequence Length = 3257 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 344 agtgttcgatttatggcaagggaaattcacatcttaagaagacttgataatccaaatgtt 403 |||||| |||| ||||||||||| || || || || ||||| || ||| ||||||||||| Sbjct: 1343 agtgttagattcatggcaagggagatacaaatattgagaaggctcgatcatccaaatgtt 1402 Query: 404 attaagcttgaaggtttg 421 || ||||| ||||||||| Sbjct: 1403 atgaagctagaaggtttg 1420
>dbj|AK105621.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C06, full insert sequence Length = 2048 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 344 agtgttcgatttatggcaagggaaattcacatcttaagaagacttgataatccaaatgtt 403 |||||| |||| ||||||||||| || || || || ||||| || ||| ||||||||||| Sbjct: 79 agtgttagattcatggcaagggagatacaaatattgagaaggctcgatcatccaaatgtt 138 Query: 404 attaagcttgaaggtttg 421 || ||||| ||||||||| Sbjct: 139 atgaagctagaaggtttg 156
>ref|NM_186098.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1722 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 221 tccttcgagaagttggacaagatagggcaaggtacctacagcagcgtgtacaa 273 |||||||||||| | |||||||| |||||||| || ||||||| ||||||||| Sbjct: 373 tccttcgagaagatcgacaagatcgggcaaggcacgtacagcaacgtgtacaa 425
>gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence contains phyA marker, complete sequence Length = 95865 Score = 58.0 bits (29), Expect = 3e-05 Identities = 95/117 (81%) Strand = Plus / Plus Query: 305 gcacttaagaaagttcgatttgccaatatggatcctgagagtgttcgatttatggcaagg 364 ||||| |||||||| || ||||| ||||||||||| || |||||||| || ||||| || Sbjct: 90876 gcactgaagaaagtgcggtttgctaatatggatcccgacagtgttcggttcatggctaga 90935 Query: 365 gaaattcacatcttaagaagacttgataatccaaatgttattaagcttgaaggtttg 421 ||||| |||| | |||| ||||| |||| |||||||| |||||||| |||||| Sbjct: 90936 gaaataatcatccttcgaaggcttgaccatcctaatgttatgaagcttgagggtttg 90992
>ref|NM_103096.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G33770 mRNA, complete cds Length = 1845 Score = 56.0 bits (28), Expect = 1e-04 Identities = 151/192 (78%) Strand = Plus / Plus Query: 221 tccttcgagaagttggacaagatagggcaaggtacctacagcagcgtgtacaaagcacgt 280 ||||| |||||| | ||||| || |||||||| || || |||| ||||| || ||| | Sbjct: 418 tcctttgagaagcttgacaaaattgggcaagggacttatagcattgtgtataaggcaagg 477 Query: 281 gatcttgagaatggaaaaattgtggcacttaagaaagttcgatttgccaatatggatcct 340 |||||||||| || ||||| |||||| | ||||| || | ||||| |||||||||||| Sbjct: 478 gatcttgagacaggcaaaatcgtggcaatgaagaaggtgaggtttgctaatatggatcct 537 Query: 341 gagagtgttcgatttatggcaagggaaattcacatcttaagaagacttgataatccaaat 400 || ||||| | || ||||| || ||||| |||| ||| ||| ||| || |||||||| Sbjct: 538 gaaagtgtaaggttcatggctagagaaatcaacattttacgaaaactcgaccatccaaat 597 Query: 401 gttattaagctt 412 ||||| |||||| Sbjct: 598 gttatgaagctt 609
>emb|Z71703.1|BVCRK1 B.vulgaris partial cdc2-related protein kinase gene Length = 604 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 393 atccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagtagcttgtatc 452 |||| |||||| | || |||||||| ||||| || ||| | |||||| |||| |||||| Sbjct: 149 atcccaatgttgtgaaacttgaagggttggttacttcaaggatgtcttgtagtttgtatt 208 Query: 453 tcgtgttcgaatacatggagcatgatctcgcgggacttgctgc 495 | ||||| || ||||||||||| ||| | || ||||||||||| Sbjct: 209 tggtgtttgagtacatggagcacgatttagctggacttgctgc 251
>emb|AJ277243.1|BVU277243 Beta vulgaris crk1 gene for putative protein kinase, exons 1-8 Length = 8436 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 393 atccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagtagcttgtatc 452 |||| |||||| | || |||||||| ||||| || ||| | |||||| |||| |||||| Sbjct: 1278 atcccaatgttgtgaaacttgaagggttggttacttcaaggatgtcttgtagtttgtatt 1337 Query: 453 tcgtgttcgaatacatggagcatgatctcgcgggacttgctgc 495 | ||||| || ||||||||||| ||| | || ||||||||||| Sbjct: 1338 tggtgtttgagtacatggagcacgatttagctggacttgctgc 1380
>emb|AJ277062.1|BVU277062 Beta vulgaris crk1 gene for CRK1 protein, exons 1-8 Length = 8373 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 393 atccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagtagcttgtatc 452 |||| |||||| | || |||||||| ||||| || ||| | |||||| |||| |||||| Sbjct: 1278 atcccaatgttgtgaaacttgaagggttggttacttcaaggatgtcttgtagtttgtatt 1337 Query: 453 tcgtgttcgaatacatggagcatgatctcgcgggacttgctgc 495 | ||||| || ||||||||||| ||| | || ||||||||||| Sbjct: 1338 tggtgtttgagtacatggagcacgatttagctggacttgctgc 1380
>gb|AC147364.7| Medicago truncatula clone mth2-68g24, complete sequence Length = 109540 Score = 50.1 bits (25), Expect = 0.008 Identities = 76/93 (81%) Strand = Plus / Plus Query: 386 cttgataatccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagtagc 445 |||||| |||| |||||||| || || |||||||| ||||| || | ||||| |||| Sbjct: 32821 cttgatcatcccaatgttatcaaactagaaggtttagtgacttctaggatgtcatgtagt 32880 Query: 446 ttgtatctcgtgttcgaatacatggagcatgat 478 |||||||| || || ||||||||||||||||| Sbjct: 32881 ttgtatcttgtctttcaatacatggagcatgat 32913 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 533 tgttacatgcagcagctactgtctggac 560 ||||||||||| |||||||| ||||||| Sbjct: 33045 tgttacatgcatcagctactttctggac 33072
>gb|AC010164.2|AC010164 Arabidopsis thaliana chromosome I BAC F14M2 genomic sequence, complete sequence Length = 103443 Score = 50.1 bits (25), Expect = 0.008 Identities = 136/173 (78%) Strand = Plus / Minus Query: 240 agatagggcaaggtacctacagcagcgtgtacaaagcacgtgatcttgagaatggaaaaa 299 |||| |||||||| || || |||| ||||| || ||| | |||||||||| || |||| Sbjct: 54332 agattgggcaagggacttatagcattgtgtataaggcaagggatcttgagacaggcaaaa 54273 Query: 300 ttgtggcacttaagaaagttcgatttgccaatatggatcctgagagtgttcgatttatgg 359 | |||||| | ||||| || | ||||| |||||||||||||| ||||| | || |||| Sbjct: 54272 tcgtggcaatgaagaaggtgaggtttgctaatatggatcctgaaagtgtaaggttcatgg 54213 Query: 360 caagggaaattcacatcttaagaagacttgataatccaaatgttattaagctt 412 | || ||||| |||| ||| ||| ||| || ||||||||||||| |||||| Sbjct: 54212 ctagagaaatcaacattttacgaaaactcgaccatccaaatgttatgaagctt 54160
>ref|NM_117069.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT4G10010 mRNA, complete cds Length = 2132 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 441 gtagcttgtatctcgtgttcgaatacatggagcatgatct 480 |||||||||| || ||||| || ||||||||||||||||| Sbjct: 584 gtagcttgtaccttgtgtttgagtacatggagcatgatct 623
>ref|NM_124464.2| Arabidopsis thaliana ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT5G50860 mRNA, complete cds Length = 2114 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 393 atccaaatgttattaagcttgaaggtttggtgacatcacg 432 |||| ||||||||||||||| |||||||||| || ||||| Sbjct: 565 atcctaatgttattaagcttcaaggtttggttacttcacg 604
>ref|NM_104338.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G54610 mRNA, complete cds Length = 2071 Score = 48.1 bits (24), Expect = 0.031 Identities = 78/96 (81%) Strand = Plus / Plus Query: 383 agacttgataatccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagt 442 ||||||||| |||| |||||| | ||| | ||||||||||| || ||| | |||||| || Sbjct: 663 agacttgatcatcctaatgttgtgaagttggaaggtttggttacgtcaagaatgtcttgt 722 Query: 443 agcttgtatctcgtgttcgaatacatggagcatgat 478 ||||| || || || || |||||||||| |||||| Sbjct: 723 agcttataccttgtatttcaatacatggatcatgat 758
>ref|NM_101725.2| Arabidopsis thaliana IBS1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G18670 (IBS1) mRNA, complete cds Length = 2474 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 450 atctcgtgttcgaatacatggagcatgatctc 481 ||||||||||||| || ||||||||||||||| Sbjct: 617 atctcgtgttcgagtatatggagcatgatctc 648
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 48.1 bits (24), Expect = 0.031 Identities = 84/104 (80%) Strand = Plus / Plus Query: 266 gtgtacaaagcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgattt 325 ||||||||||| || |||||| | | || || ||||| || || ||||| || || ||| Sbjct: 23954 gtgtacaaagctcgagatcttaaaacaggcaagattgttgctctcaagaaggtgcggttt 24013 Query: 326 gccaatatggatcctgagagtgttcgatttatggcaagggaaat 369 | |||| |||||||||| ||||| || ||||||||||| ||||| Sbjct: 24014 gtcaatttggatcctgaaagtgtgcgctttatggcaagagaaat 24057
>gb|AC011809.2| Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence Length = 108767 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 450 atctcgtgttcgaatacatggagcatgatctc 481 ||||||||||||| || ||||||||||||||| Sbjct: 99879 atctcgtgttcgagtatatggagcatgatctc 99910
>emb|AL161516.2|ATCHRIV28 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 28 Length = 198005 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Minus Query: 441 gtagcttgtatctcgtgttcgaatacatggagcatgatct 480 |||||||||| || ||||| || ||||||||||||||||| Sbjct: 90812 gtagcttgtaccttgtgtttgagtacatggagcatgatct 90773
>emb|AL049481.1|ATT5L19 Arabidopsis thaliana DNA chromosome 4, BAC clone T5L19 (ESSA project) Length = 92495 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Minus Query: 441 gtagcttgtatctcgtgttcgaatacatggagcatgatct 480 |||||||||| || ||||| || ||||||||||||||||| Sbjct: 51384 gtagcttgtaccttgtgtttgagtacatggagcatgatct 51345
>gb|AY128918.1| Arabidopsis thaliana unknown protein (At1g54610) mRNA, complete cds Length = 1786 Score = 48.1 bits (24), Expect = 0.031 Identities = 78/96 (81%) Strand = Plus / Plus Query: 383 agacttgataatccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagt 442 ||||||||| |||| |||||| | ||| | ||||||||||| || ||| | |||||| || Sbjct: 511 agacttgatcatcctaatgttgtgaagttggaaggtttggttacgtcaagaatgtcttgt 570 Query: 443 agcttgtatctcgtgttcgaatacatggagcatgat 478 ||||| || || || || |||||||||| |||||| Sbjct: 571 agcttataccttgtatttcaatacatggatcatgat 606
>gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete sequence Length = 87768 Score = 48.1 bits (24), Expect = 0.031 Identities = 78/96 (81%) Strand = Plus / Minus Query: 383 agacttgataatccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagt 442 ||||||||| |||| |||||| | ||| | ||||||||||| || ||| | |||||| || Sbjct: 24807 agacttgatcatcctaatgttgtgaagttggaaggtttggttacgtcaagaatgtcttgt 24748 Query: 443 agcttgtatctcgtgttcgaatacatggagcatgat 478 ||||| || || || || |||||||||| |||||| Sbjct: 24747 agcttataccttgtatttcaatacatggatcatgat 24712
>gb|AF370510.1|AF370510 Arabidopsis thaliana Unknown protein (T22H22.5) mRNA, complete cds Length = 2041 Score = 48.1 bits (24), Expect = 0.031 Identities = 78/96 (81%) Strand = Plus / Plus Query: 383 agacttgataatccaaatgttattaagcttgaaggtttggtgacatcacgcatgtctagt 442 ||||||||| |||| |||||| | ||| | ||||||||||| || ||| | |||||| || Sbjct: 667 agacttgatcatcctaatgttgtgaagttggaaggtttggttacgtcaagaatgtcttgt 726 Query: 443 agcttgtatctcgtgttcgaatacatggagcatgat 478 ||||| || || || || |||||||||| |||||| Sbjct: 727 agcttataccttgtatttcaatacatggatcatgat 762
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.031 Identities = 84/104 (80%) Strand = Plus / Plus Query: 266 gtgtacaaagcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgattt 325 ||||||||||| || |||||| | | || || ||||| || || ||||| || || ||| Sbjct: 7564868 gtgtacaaagctcgagatcttaaaacaggcaagattgttgctctcaagaaggtgcggttt 7564927 Query: 326 gccaatatggatcctgagagtgttcgatttatggcaagggaaat 369 | |||| |||||||||| ||||| || ||||||||||| ||||| Sbjct: 7564928 gtcaatttggatcctgaaagtgtgcgctttatggcaagagaaat 7564971
>gb|BT005933.1| Arabidopsis thaliana At5g50860 gene, complete cds Length = 1743 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 393 atccaaatgttattaagcttgaaggtttggtgacatcacg 432 |||| ||||||||||||||| |||||||||| || ||||| Sbjct: 509 atcctaatgttattaagcttcaaggtttggttacttcacg 548
>dbj|AB026637.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16E14 Length = 8850 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Minus Query: 393 atccaaatgttattaagcttgaaggtttggtgacatcacg 432 |||| ||||||||||||||| |||||||||| || ||||| Sbjct: 7678 atcctaatgttattaagcttcaaggtttggttacttcacg 7639
>dbj|AK118096.1| Arabidopsis thaliana At4g10010 mRNA for putative protein kinase, complete cds, clone: RAFL19-35-H03 Length = 2132 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 441 gtagcttgtatctcgtgttcgaatacatggagcatgatct 480 |||||||||| || ||||| || ||||||||||||||||| Sbjct: 584 gtagcttgtaccttgtgtttgagtacatggagcatgatct 623
>dbj|AK117108.1| Arabidopsis thaliana At5g50860 mRNA for putative cyclin-dependent protein kinase, complete cds, clone: RAFL16-64-J09 Length = 2126 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 393 atccaaatgttattaagcttgaaggtttggtgacatcacg 432 |||| ||||||||||||||| |||||||||| || ||||| Sbjct: 576 atcctaatgttattaagcttcaaggtttggttacttcacg 615
>dbj|AK068916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002H13, full insert sequence Length = 2935 Score = 48.1 bits (24), Expect = 0.031 Identities = 84/104 (80%) Strand = Plus / Plus Query: 266 gtgtacaaagcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgattt 325 ||||||||||| || |||||| | | || || ||||| || || ||||| || || ||| Sbjct: 880 gtgtacaaagctcgagatcttaaaacaggcaagattgttgctctcaagaaggtgcggttt 939 Query: 326 gccaatatggatcctgagagtgttcgatttatggcaagggaaat 369 | |||| |||||||||| ||||| || ||||||||||| ||||| Sbjct: 940 gtcaatttggatcctgaaagtgtgcgctttatggcaagagaaat 983
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.031 Identities = 84/104 (80%) Strand = Plus / Plus Query: 266 gtgtacaaagcacgtgatcttgagaatggaaaaattgtggcacttaagaaagttcgattt 325 ||||||||||| || |||||| | | || || ||||| || || ||||| || || ||| Sbjct: 7634955 gtgtacaaagctcgagatcttaaaacaggcaagattgttgctctcaagaaggtgcggttt 7635014 Query: 326 gccaatatggatcctgagagtgttcgatttatggcaagggaaat 369 | |||| |||||||||| ||||| || ||||||||||| ||||| Sbjct: 7635015 gtcaatttggatcctgaaagtgtgcgctttatggcaagagaaat 7635058
>gb|AC146747.7| Medicago truncatula clone mth2-14h5, complete sequence Length = 129204 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 385 acttgataatccaaatgttattaagcttgaaggtttggt 423 ||||||| ||||||||||| | ||||||||||| ||||| Sbjct: 87820 acttgatcatccaaatgttgtaaagcttgaaggattggt 87858
>gb|AC068769.19| Homo sapiens 3 BAC RP11-14I2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191246 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 150 ctggctggccgaggtggctcacg 172 ||||||||||||||||||||||| Sbjct: 152751 ctggctggccgaggtggctcacg 152773
>gb|AC114771.3| Homo sapiens BAC clone RP11-425I13 from 4, complete sequence Length = 121946 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 151 tggctggccgaggtggctcacg 172 |||||||||||||||||||||| Sbjct: 25815 tggctggccgaggtggctcacg 25794
>emb|AL365206.24| Human DNA sequence from clone RP1-8G15 on chromosome 6 Contains the 5' part of the AMD1 gene for S-adenosylmethionine decarboxylase 1 (ADOMETDC) and a CpG island, complete sequence Length = 27273 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 gtggcggctggctggccgagg 163 ||||||||||||||||||||| Sbjct: 9095 gtggcggctggctggccgagg 9075
>gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, complete sequence Length = 226170 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 149 gctggctggccgaggtggctcacgg 173 |||||| |||||||||||||||||| Sbjct: 70599 gctggccggccgaggtggctcacgg 70575
>gb|AC012154.16| Homo sapiens 3 BAC RP11-48H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 tggctggccgaggtggctcac 171 ||||||||||||||||||||| Sbjct: 54939 tggctggccgaggtggctcac 54919
>gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162081 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ggctggccgaggtggctcacg 172 ||||||||||||||||||||| Sbjct: 137004 ggctggccgaggtggctcacg 137024
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 524 caggtcaagtgttacatgcagcagctact 552 ||||| || |||||||||||||||||||| Sbjct: 5494118 caggttaaatgttacatgcagcagctact 5494146
>gb|AC078846.2|AC078846 Homo sapiens chromosome 7 clone RP11-448A19, complete sequence Length = 219428 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 ggctggccgaggtggctcacg 172 ||||||||||||||||||||| Sbjct: 108100 ggctggccgaggtggctcacg 108080
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 524 caggtcaagtgttacatgcagcagctact 552 ||||| || |||||||||||||||||||| Sbjct: 90958 caggttaaatgttacatgcagcagctact 90986
>gb|AF069545.1|AF069545 Rhodobacter sphaeroides f. sp. denitrificans NapE (napE), NapF (napF), NapD (napD), periplasmic nitrate reductase precursor (napA), cytochrome c precursor (napB), and membranous tetrahemic cytochrome c (napC) genes, complete cds Length = 7497 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 catggagcatgatctcgcggg 486 ||||||||||||||||||||| Sbjct: 6932 catggagcatgatctcgcggg 6912
>dbj|AP006392.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39E03, TM0266, complete sequence Length = 113459 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 240 agatagggcaaggtacctacagcagcgtgtacaaagc 276 |||| ||||||||||| || |||| |||||||||||| Sbjct: 29991 agattgggcaaggtacttatagcaacgtgtacaaagc 30027
>gb|M59455.1|XELTRANSAP Xenopus laevis transcription factor (AP-2) mRNA, complete cds Length = 1573 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 gagaagttggacaagataggg 247 ||||||||||||||||||||| Sbjct: 807 gagaagttggacaagataggg 827
>gb|AC153148.4| Mus musculus BAC clone RP23-189N11 from chromosome 5, complete sequence Length = 229020 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tgtacaaagcacgtgatctt 286 |||||||||||||||||||| Sbjct: 13915 tgtacaaagcacgtgatctt 13934
>gb|AC004234.1| Homo sapiens chromosome 16, cosmid clone 399H11 (LANL), complete sequence Length = 41103 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gtggtggcatcagagctgag 94 |||||||||||||||||||| Sbjct: 26982 gtggtggcatcagagctgag 26963
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 ataatccaaatgttattaagcttg 413 |||||||||||||||||| ||||| Sbjct: 1610496 ataatccaaatgttattacgcttg 1610473
>ref|XM_869240.1| PREDICTED: Bos taurus hypothetical protein LOC617058 (LOC617058), mRNA Length = 1239 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gcacgtggcggctggctggc 158 |||||||||||||||||||| Sbjct: 979 gcacgtggcggctggctggc 960
>gb|AC132270.3| Mus musculus BAC clone RP24-338C23 from chromosome 5, complete sequence Length = 145471 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tgtacaaagcacgtgatctt 286 |||||||||||||||||||| Sbjct: 129419 tgtacaaagcacgtgatctt 129438
>gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromosome 7, complete sequence Length = 155911 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gctggctggccgaggtggctcacg 172 ||||||||| |||||||||||||| Sbjct: 11910 gctggctggacgaggtggctcacg 11887
>gb|AC183613.3| Pan troglodytes BAC clone CH251-171F23 from chromosome 7, complete sequence Length = 180545 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gctggctggccgaggtggctcacg 172 ||||||||| |||||||||||||| Sbjct: 44638 gctggctggacgaggtggctcacg 44661
>gb|AC093168.3| Homo sapiens BAC clone RP11-148M21 from 7, complete sequence Length = 148689 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gctggctggccgaggtggctcacg 172 ||||||||| |||||||||||||| Sbjct: 51693 gctggctgggcgaggtggctcacg 51670
>gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, complete sequence Length = 210797 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ggctggccgaggtggctcac 171 |||||||||||||||||||| Sbjct: 38902 ggctggccgaggtggctcac 38921
>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5' end of the PAX2 gene for paired box gene 2 and fifteen CpG islands, complete sequence Length = 187101 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gctggctggccgaggtggctcacg 172 ||||||||| |||||||||||||| Sbjct: 21576 gctggctgggcgaggtggctcacg 21599
>emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on chromosome 6 Contains the 3' part of gene KIAA1028, a pseudogene similar to ribosomal protein S19 (RPS19), a pseudogene similar to protein phosphatases, a ribosomal protein S20 (RPS20) pseudogene and a CpG island, complete sequence Length = 189098 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gctggctggccgaggtggctcacg 172 ||||||||| |||||||||||||| Sbjct: 160770 gctggctgggcgaggtggctcacg 160793
>emb|AL136102.10| Human DNA sequence from clone RP3-453O12 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 78160 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gctggctggccgaggtggctcacg 172 ||||||||| |||||||||||||| Sbjct: 17356 gctggctgggcgaggtggctcacg 17379
>emb|AL034379.8|HS423B22 Human DNA sequence from clone RP3-423B22 on chromosome 1p33-35.3 Contains the 3' end of the gene for a novel protein (FLJ23231), the gene for a novel protein (FLJ11730), the gene for Smad nuclear interacting protein (SNIP1) (FLJ14716, FLJ12553), a ferritin heavy polypeptide 1 (FTH1) pseudogene, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene, the DNALI1 gene for dynein axonemal light intermediate polypeptide 1 and the 3' end of the 3' end of the gene for nucleolar GTPase (HUMAUANTIG), complete sequence Length = 112224 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gctggctggccgaggtggctcacg 172 ||||||||| |||||||||||||| Sbjct: 40398 gctggctgggcgaggtggctcacg 40421
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 ataatccaaatgttattaagcttg 413 |||||||||||||||||| ||||| Sbjct: 1749559 ataatccaaatgttattacgcttg 1749582
>gb|AC025669.19| Mus musculus chromosome 14, clone RP23-5O16, complete sequence Length = 203826 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 cttgctgctacacctggcat 507 |||||||||||||||||||| Sbjct: 102619 cttgctgctacacctggcat 102600
>gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163461 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tggccgaggtggctcacgga 174 |||||||||||||||||||| Sbjct: 107749 tggccgaggtggctcacgga 107730
>gb|AC013787.15| Homo sapiens chromosome 15, clone RP11-531E13, complete sequence Length = 176304 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 ggctggccgaggtggctcac 171 |||||||||||||||||||| Sbjct: 30186 ggctggccgaggtggctcac 30167
>gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold Length = 644818 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gctggctggccgaggtggctcacg 172 ||||||||| |||||||||||||| Sbjct: 609252 gctggctgggcgaggtggctcacg 609229
>emb|AL133163.3|CNS01DU4 Human chromosome 14 DNA sequence BAC R-561B11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 183491 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 ggctggctggccgaggtggctcac 171 ||||||||||||| |||||||||| Sbjct: 123401 ggctggctggccgtggtggctcac 123378
>emb|AL731857.9| Mouse DNA sequence from clone RP23-106A3 on chromosome 2, complete sequence Length = 157220 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ctggcataaaattcacagag 520 |||||||||||||||||||| Sbjct: 25874 ctggcataaaattcacagag 25855 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,529,182 Number of Sequences: 3902068 Number of extensions: 4529182 Number of successful extensions: 85327 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84999 Number of HSP's gapped (non-prelim): 321 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)