ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63b01 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 151 bits (382), Expect = 1e-36 Identities = 82/139 (58%), Positives = 96/139 (69%), Gaps = 13/139 (9%) Frame = +1 Query: 49 MAASMITSPIVAPTS-----------LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLT 195 MA S+++S + P+S LPSLSR +SF V SG KKIKVDKPLG+GGG+ Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60 Query: 196 V--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 369 + +D++GRK KGVYQFVDKYGANVDGYSPIY EEW+ +GD YAGGTTGLLIWAVT Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120 Query: 370 XXXXXXXXXXXVYNTSALA 426 VYNTSALA Sbjct: 121 LAGLLAGGALLVYNTSALA 139
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 142 bits (359), Expect = 6e-34 Identities = 76/137 (55%), Positives = 91/137 (66%), Gaps = 11/137 (8%) Frame = +1 Query: 49 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 198 MA+++++S + PT LPSL+R SSF VV SG KK+K DKP G+ G + + Sbjct: 1 MASTVMSSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALR 60 Query: 199 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 375 +DA+GRK KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT Sbjct: 61 DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLV 120 Query: 376 XXXXXXXXXVYNTSALA 426 VYNTSALA Sbjct: 121 GILAGGALLVYNTSALA 137
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 142 bits (359), Expect = 6e-34 Identities = 76/137 (55%), Positives = 91/137 (66%), Gaps = 11/137 (8%) Frame = +1 Query: 49 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 198 MA+++++S + PT LPSL+R SSF VV SG KK+K DKP G+ G + + Sbjct: 1 MASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALR 60 Query: 199 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 375 +DA+GRK KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT Sbjct: 61 DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLL 120 Query: 376 XXXXXXXXXVYNTSALA 426 VYNTSALA Sbjct: 121 GILAGGALLVYNTSALA 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 137 bits (346), Expect = 2e-32 Identities = 70/117 (59%), Positives = 81/117 (69%), Gaps = 2/117 (1%) Frame = +1 Query: 82 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 255 A LPSL+R SSF V SG KK+K DKP G+ G +++ +DA+GRK KGVYQFVD Sbjct: 19 AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78 Query: 256 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 426 KYGANVDGYSPIY ++WS SGD Y GGTTGL IWAVT V+NTSALA Sbjct: 79 KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 132 bits (333), Expect = 6e-31 Identities = 73/139 (52%), Positives = 85/139 (61%), Gaps = 13/139 (9%) Frame = +1 Query: 49 MAASMITSPIV-----------APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLT 195 MAAS++ S + A LPSL+R SF +V SG KKIK DKP G+ G + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60 Query: 196 V--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 369 + +DA+GRK GVY++VDKYGANVDGYSPIY EWS SGD Y GG TGL IWAVT Sbjct: 61 LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120 Query: 370 XXXXXXXXXXXVYNTSALA 426 VYNTSALA Sbjct: 121 LAGILAGGALLVYNTSALA 139
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 131 bits (330), Expect = 1e-30 Identities = 74/140 (52%), Positives = 88/140 (62%), Gaps = 14/140 (10%) Frame = +1 Query: 49 MAASMITSPI-----------VAPTSLPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGGL 192 MAAS++ S + ++ LPSL+R SSF +V SG KKIK DKP G+ G + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60 Query: 193 TV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAV 366 + +DA+GRK GVY+FVDKYGANVDGYSPIY +EWS SGD Y GG TGL IWAV Sbjct: 61 DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120 Query: 367 TXXXXXXXXXXXVYNTSALA 426 T VYNTSALA Sbjct: 121 TLAGILAGGALLVYNTSALA 140
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 123 bits (309), Expect = 4e-28 Identities = 67/137 (48%), Positives = 81/137 (59%), Gaps = 11/137 (8%) Frame = +1 Query: 49 MAASMITSPIVAPTSLPSLSRRG---------SSFAVVCSGGKKIKVDKPLGLGGGLTVD 201 M+A ++ S + P+S P L R S +V KK++ +P G GGG+ Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60 Query: 202 --IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 375 +DA+GR KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT Sbjct: 61 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLA 120 Query: 376 XXXXXXXXXVYNTSALA 426 VY+TSALA Sbjct: 121 GILLGGALLVYSTSALA 137
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = +1 Query: 139 SGGKKIKVDKPLGLGGGLTVDIDA 210 SGGKKIKVDKPLGLGGGLTVDIDA Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -3 Query: 236 PFLPTFLPLASMSTVKPPPS-PRGLSTLIFLPPLQTTAKEEPRRER 102 P+LP P S + PPPS P G T I PL++ AK + ++ Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228
>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 446 Score = 30.8 bits (68), Expect = 3.4 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = +1 Query: 94 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVDIDANGRKVGKKGV 240 L ++ R AVVC GG + K D L L G+T DI G KV + V Sbjct: 354 LSEVNTRELGMAVVCLGGGRRKADDKLDLSVGMT-DILTVGSKVDSESV 401
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.8 bits (68), Expect = 3.4 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -3 Query: 278 PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 129 P T P +T TP PT P+ + +TV P P+P G T P TT Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -3 Query: 278 PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 129 P+T+ + N P PT P+ + +TV P P+P G T P TT Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928
>AAS_SHIFL (Q83JV7) AAS bifunctional protein [Includes:| 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid O-acyltransferase) (2-acyl-GPE acyltransferase); Acyl-[acyl-carrier-protein] synthetase (EC 6 Length = 719 Score = 30.4 bits (67), Expect = 4.4 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 161 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSRSR 33 TL LPP Q + PR ++ G + +++MEA + R R Sbjct: 161 TLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVRPR 203
>AAS_ECOLI (P31119) AAS bifunctional protein [Includes:| 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid O-acyltransferase) (2-acyl-GPE acyltransferase); Acyl-[acyl-carrier-protein] synthetase (EC 6 Length = 719 Score = 30.4 bits (67), Expect = 4.4 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 161 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSRSR 33 TL LPP Q + PR ++ G + +++MEA + R R Sbjct: 161 TLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVRPR 203
>MAP2_MOUSE (P20357) Microtubule-associated protein 2 (MAP 2)| Length = 1828 Score = 30.0 bits (66), Expect = 5.7 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Frame = -3 Query: 227 PTFLPLASMSTV----KPPPSPRGLSTLIFLPPLQTTAKEE-PRRERDGRLVGATIGEVI 63 P LPLA+ T PPPSP T L T +K E P +E+ + + Sbjct: 120 PAALPLAAEETANLPPSPPPSPASEQTATVEEDLLTASKMEFPEQEKFPSSFAEPLDKGE 179 Query: 62 MEAAIVSRSRSLSSYACLVP 3 ME + S+ +A LVP Sbjct: 180 MEFKMPSKPGEDFEHAALVP 199
>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor| Length = 265 Score = 30.0 bits (66), Expect = 5.7 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = +1 Query: 133 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 300 +CSG KI+ K +G + T D +A + VG G Y +V Y A DGY+ Y+P Sbjct: 59 LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116
>AAS_ECOL6 (Q8FEA6) AAS bifunctional protein [Includes:| 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid O-acyltransferase) (2-acyl-GPE acyltransferase); Acyl-[acyl-carrier-protein] synthetase (EC 6 Length = 719 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 161 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSRSR 33 TL LPP Q + PR ++ G + +++MEA + R R Sbjct: 161 TLHILPPTQVEMPDAPRARDRRKIAGEMLHQIMMEARMAVRPR 203
>AAS_ECO57 (Q8X6J8) AAS bifunctional protein [Includes:| 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid O-acyltransferase) (2-acyl-GPE acyltransferase); Acyl-[acyl-carrier-protein] synthetase (EC 6 Length = 719 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 161 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSRSR 33 TL LPP Q + PR ++ G + +++MEA + R R Sbjct: 161 TLHILPPTQVEMPDAPRARDRRKIAGEMLHQIMMEARMAVRPR 203
>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3036 Score = 29.6 bits (65), Expect = 7.5 Identities = 25/79 (31%), Positives = 33/79 (41%) Frame = -3 Query: 278 PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERD 99 P L P+ ++ P L T+ PP G + LPP TT PRR R Sbjct: 2285 PPALPPWARPDYNPPLLETW-----KRPDYQPPVVAGCA----LPPPGTTPVPPPRRRRA 2335 Query: 98 GRLVGATIGEVIMEAAIVS 42 L + +GE + E AI S Sbjct: 2336 VVLDQSNVGEALKELAIKS 2354
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 215 PLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDG 96 P+ T KPP P G + PP Q T E+P E+ G Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387
>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor| Length = 893 Score = 29.3 bits (64), Expect = 9.8 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = -3 Query: 191 KPPPSPRGLSTLIFLPPLQ--------TTAKEEPRRERDGRLVGATIGEV 66 +PPP+PR S PP Q TT PRR RD R G G+V Sbjct: 53 RPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRR-RDPRYAGVRRGDV 101
>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)| Length = 433 Score = 29.3 bits (64), Expect = 9.8 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 139 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 288 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260 Score = 29.3 bits (64), Expect = 9.8 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 139 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 288 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153
>GATB_ARCFU (O28164) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 471 Score = 29.3 bits (64), Expect = 9.8 Identities = 16/78 (20%), Positives = 39/78 (50%) Frame = +1 Query: 22 LERERERDTMAASMITSPIVAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVD 201 + +E + + +M + + P ++ R+ + + G + + D+PL LGG +T++ Sbjct: 52 INKEAVKAAVKVAMALNAEIQPFTV--FDRKNYFYPDLPKGFQISQYDRPLALGGYVTIE 109 Query: 202 IDANGRKVGKKGVYQFVD 255 +D +++ K V+ D Sbjct: 110 LDGQEKRIQLKRVHMEED 127 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,776,457 Number of Sequences: 219361 Number of extensions: 1137233 Number of successful extensions: 4135 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3862 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4122 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
