ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62l24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188468.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 147 bits (74), Expect = 5e-32 Identities = 292/362 (80%), Gaps = 2/362 (0%) Strand = Plus / Plus Query: 268 gactgcgccgccgcttcctacgacctcatcgtcctccccggtggtgttcctggcgctgcg 327 ||||||||||||||| || |||||||||||||||||| || || ||||| ||||| ||| Sbjct: 205 gactgcgccgccgctcacttcgacctcatcgtcctcccgggaggggttccaggcgcggcg 264 Query: 328 aatctcggtggttgtgcgacgttggagggcatactgaggaagcacgttgagaagggagga 387 || ||||| || || ||| || |||| | ||| |||||| ||||| | || ||||| Sbjct: 265 aacctcggcggctgcgcggcgctggaagccatggtgaggaggcacgcggcgaccggaggt 324 Query: 388 ctctacgccgccatatgcgctgcaccgccgctggcgttggcgtcctggggcctactcgac 447 |||||||||||||| ||||| || |||||||||||| |||||||||||||| | ||| || Sbjct: 325 ctctacgccgccatctgcgccgcgccgccgctggcgctggcgtcctggggcatgctcaac 384 Query: 448 ggacacaaggctacgggtcatccctggttcgtgggagaagttccctcctgaggtgacccg 507 || | |||||| || | |||||| |||||| ||| |||||||| || |||||| ||| Sbjct: 385 ggcctcaaggcaactgctcatccgctgttcgt-ggacaagttcccaccggaggtg-gccg 442 Query: 508 ccgtggacgcgaacgtggtggtggacggcaacgccgtgacgggcacggggccggcgacgt 567 ||||||| |||| |||||||||||||| | |||||| ||| || || |||||||||| Sbjct: 443 ccgtggatgcgagcgtggtggtggacgcgagcgccgtcacgagccgtggcccggcgacgt 502 Query: 568 cgatggagtttgcgctggctttggtggaacagctctacgggaaggagaaggtcgagcaga 627 ||| |||||| || || ||| |||| || || |||||| | ||| | |||| |||||||| Sbjct: 503 cgacggagttcgctctcgctctggtagagcaactctacagcaagaacaaggccgagcaga 562 Query: 628 tc 629 || Sbjct: 563 tc 564 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 100 aagaaggtgctgctgccgatcgtcgccggcacagagccgatcgaggcgtccatccccatc 159 ||||||||| || ||||||||||||||||||| |||||| | |||||| | | |||||| Sbjct: 28 aagaaggtgttggtgccgatcgtcgccggcacggagccggtggaggcggcggtgcccatc 87 Query: 160 gacatcctccgccgcgccggcgccgacgttaccgtcgcttc 200 ||| ||||||||||||||||||| ||||| ||||| ||||| Sbjct: 88 gacgtcctccgccgcgccggcgcggacgtcaccgtggcttc 128 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 tcgtcgagatcatgtacggcgtca 241 |||||||| ||||||||||||||| Sbjct: 149 tcgtcgaggtcatgtacggcgtca 172
>dbj|AK063270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B10, full insert sequence Length = 1474 Score = 147 bits (74), Expect = 5e-32 Identities = 292/362 (80%), Gaps = 2/362 (0%) Strand = Plus / Plus Query: 268 gactgcgccgccgcttcctacgacctcatcgtcctccccggtggtgttcctggcgctgcg 327 ||||||||||||||| || |||||||||||||||||| || || ||||| ||||| ||| Sbjct: 318 gactgcgccgccgctcacttcgacctcatcgtcctcccgggaggggttccaggcgcggcg 377 Query: 328 aatctcggtggttgtgcgacgttggagggcatactgaggaagcacgttgagaagggagga 387 || ||||| || || ||| || |||| | ||| |||||| ||||| | || ||||| Sbjct: 378 aacctcggcggctgcgcggcgctggaagccatggtgaggaggcacgcggcgaccggaggt 437 Query: 388 ctctacgccgccatatgcgctgcaccgccgctggcgttggcgtcctggggcctactcgac 447 |||||||||||||| ||||| || |||||||||||| |||||||||||||| | ||| || Sbjct: 438 ctctacgccgccatctgcgccgcgccgccgctggcgctggcgtcctggggcatgctcaac 497 Query: 448 ggacacaaggctacgggtcatccctggttcgtgggagaagttccctcctgaggtgacccg 507 || | |||||| || | |||||| |||||| ||| |||||||| || |||||| ||| Sbjct: 498 ggcctcaaggcaactgctcatccgctgttcgt-ggacaagttcccaccggaggtg-gccg 555 Query: 508 ccgtggacgcgaacgtggtggtggacggcaacgccgtgacgggcacggggccggcgacgt 567 ||||||| |||| |||||||||||||| | |||||| ||| || || |||||||||| Sbjct: 556 ccgtggatgcgagcgtggtggtggacgcgagcgccgtcacgagccgtggcccggcgacgt 615 Query: 568 cgatggagtttgcgctggctttggtggaacagctctacgggaaggagaaggtcgagcaga 627 ||| |||||| || || ||| |||| || || |||||| | ||| | |||| |||||||| Sbjct: 616 cgacggagttcgctctcgctctggtagagcaactctacagcaagaacaaggccgagcaga 675 Query: 628 tc 629 || Sbjct: 676 tc 677 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 100 aagaaggtgctgctgccgatcgtcgccggcacagagccgatcgaggcgtccatccccatc 159 ||||||||| || ||||||||||||||||||| |||||| | |||||| | | |||||| Sbjct: 141 aagaaggtgttggtgccgatcgtcgccggcacggagccggtggaggcggcggtgcccatc 200 Query: 160 gacatcctccgccgcgccggcgccgacgttaccgtcgcttc 200 ||| ||||||||||||||||||| ||||| ||||| ||||| Sbjct: 201 gacgtcctccgccgcgccggcgcggacgtcaccgtggcttc 241 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 tcgtcgagatcatgtacggcgtca 241 |||||||| ||||||||||||||| Sbjct: 262 tcgtcgaggtcatgtacggcgtca 285
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 104 aggtgctgctgccgatcgtcgccggcacagagccgatcgaggcgtccatccccatcgaca 163 ||||| || ||||||||||||||||||| |||||| | |||||| | | ||||||||| Sbjct: 6411999 aggtgttggtgccgatcgtcgccggcacggagccggtggaggcggcggtgcccatcgacg 6412058 Query: 164 tcctccgccgcgccggcgccgacgttaccgtcgcttc 200 ||||||||||||||||||| ||||| ||||| ||||| Sbjct: 6412059 tcctccgccgcgccggcgcggacgtcaccgtggcttc 6412095 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 382 ggaggactctacgccgccatatgcgctgcaccgccgctggcgttggcgtcctggggc 438 ||||| |||||||||||||| ||||| || |||||||||||| |||||||||||||| Sbjct: 6412377 ggaggtctctacgccgccatctgcgccgcgccgccgctggcgctggcgtcctggggc 6412433 Score = 58.0 bits (29), Expect = 4e-05 Identities = 101/125 (80%) Strand = Plus / Plus Query: 505 ccgccgtggacgcgaacgtggtggtggacggcaacgccgtgacgggcacggggccggcga 564 |||||||||| |||| |||||||||||||| | |||||| ||| || || ||||||| Sbjct: 6413833 ccgccgtggatgcgagcgtggtggtggacgcgagcgccgtcacgagccgtggcccggcga 6413892 Query: 565 cgtcgatggagtttgcgctggctttggtggaacagctctacgggaaggagaaggtcgagc 624 |||||| |||||| || || ||| |||| || || |||||| | ||| | |||| ||||| Sbjct: 6413893 cgtcgacggagttcgctctcgctctggtagagcaactctacagcaagaacaaggccgagc 6413952 Query: 625 agatc 629 ||||| Sbjct: 6413953 agatc 6413957 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 268 gactgcgccgccgcttcctacgacctcatcgtcctccc 305 ||||||||||||||| || |||||||||||||||||| Sbjct: 6412172 gactgcgccgccgctcacttcgacctcatcgtcctccc 6412209 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgccgcgccggcgccgacgtt 189 ||||||||||||||||||||| Sbjct: 37647191 cgccgcgccggcgccgacgtt 37647171 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 19362988 cctccgccgcgccggcgccg 19363007 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 10003815 ccgccgcgccggcgccgacg 10003796 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 tcgtcgagatcatgtacggcgtca 241 |||||||| ||||||||||||||| Sbjct: 6412116 tcgtcgaggtcatgtacggcgtca 6412139
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665D10 Length = 134967 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 104 aggtgctgctgccgatcgtcgccggcacagagccgatcgaggcgtccatccccatcgaca 163 ||||| || ||||||||||||||||||| |||||| | |||||| | | ||||||||| Sbjct: 34394 aggtgttggtgccgatcgtcgccggcacggagccggtggaggcggcggtgcccatcgacg 34453 Query: 164 tcctccgccgcgccggcgccgacgttaccgtcgcttc 200 ||||||||||||||||||| ||||| ||||| ||||| Sbjct: 34454 tcctccgccgcgccggcgcggacgtcaccgtggcttc 34490 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 382 ggaggactctacgccgccatatgcgctgcaccgccgctggcgttggcgtcctggggc 438 ||||| |||||||||||||| ||||| || |||||||||||| |||||||||||||| Sbjct: 34772 ggaggtctctacgccgccatctgcgccgcgccgccgctggcgctggcgtcctggggc 34828 Score = 58.0 bits (29), Expect = 4e-05 Identities = 101/125 (80%) Strand = Plus / Plus Query: 505 ccgccgtggacgcgaacgtggtggtggacggcaacgccgtgacgggcacggggccggcga 564 |||||||||| |||| |||||||||||||| | |||||| ||| || || ||||||| Sbjct: 36228 ccgccgtggatgcgagcgtggtggtggacgcgagcgccgtcacgagccgtggcccggcga 36287 Query: 565 cgtcgatggagtttgcgctggctttggtggaacagctctacgggaaggagaaggtcgagc 624 |||||| |||||| || || ||| |||| || || |||||| | ||| | |||| ||||| Sbjct: 36288 cgtcgacggagttcgctctcgctctggtagagcaactctacagcaagaacaaggccgagc 36347 Query: 625 agatc 629 ||||| Sbjct: 36348 agatc 36352 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 268 gactgcgccgccgcttcctacgacctcatcgtcctccc 305 ||||||||||||||| || |||||||||||||||||| Sbjct: 34567 gactgcgccgccgctcacttcgacctcatcgtcctccc 34604 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 tcgtcgagatcatgtacggcgtca 241 |||||||| ||||||||||||||| Sbjct: 34511 tcgtcgaggtcatgtacggcgtca 34534
>dbj|AK105855.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H05, full insert sequence Length = 1495 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 100 aagaaggtgctgctgccgatcgtcgccggcacagagccgatcgaggcgtccatccccatc 159 |||||||||||| ||||||||| ||| || |||||||| ||||| |||| || || Sbjct: 139 aagaaggtgctggtgccgatcgcgagcgggacggagccgatggaggccgtcatcaccgtc 198 Query: 160 gacatcctccgccgcgccggcgccgacgttaccgtcgc 197 ||| | |||||||||||||| |||||||| ||||||| Sbjct: 199 gacgtgctccgccgcgccggggccgacgtctccgtcgc 236
>dbj|AK072614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133K03, full insert sequence Length = 1495 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 100 aagaaggtgctgctgccgatcgtcgccggcacagagccgatcgaggcgtccatccccatc 159 |||||||||||| ||||||||| ||| || |||||||| ||||| |||| || || Sbjct: 140 aagaaggtgctggtgccgatcgcgagcgggacggagccgatggaggccgtcatcaccgtc 199 Query: 160 gacatcctccgccgcgccggcgccgacgttaccgtcgc 197 ||| | |||||||||||||| |||||||| ||||||| Sbjct: 200 gacgtgctccgccgcgccggggccgacgtctccgtcgc 237
>emb|AJ439335.1|HVU439335 Hordeum vulgare mRNA for putative ROP4 protein Length = 677 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 515 cgcgaacgtggtggtggacggcaacgccgtga 546 ||||||||||||||||||||||| | |||||| Sbjct: 164 cgcgaacgtggtggtggacggcaccaccgtga 195
>ref|XM_515410.1| PREDICTED: Pan troglodytes LOC459156 (LOC459156), mRNA Length = 2573 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 ggctgactgcgccgccgcttcc 285 |||||||||||||||||||||| Sbjct: 21 ggctgactgcgccgccgcttcc 42
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 tcctccgccgcgccggcgccga 185 |||||||||||||||||||||| Sbjct: 3112824 tcctccgccgcgccggcgccga 3112803
>ref|XM_418075.1| PREDICTED: Gallus gallus potassium voltage-gated channel, subfamily H (eag-related), member 6 (KCNH6), mRNA Length = 6039 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 12 ggaggagaagcactgcaactgcagct 37 ||||||||||||||| |||||||||| Sbjct: 1662 ggaggagaagcactggaactgcagct 1687
>emb|AJ271210.1|GGA271210 Gallus gallus partial mRNA for HERG protein (erg gene) Length = 1581 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 12 ggaggagaagcactgcaactgcagct 37 ||||||||||||||| |||||||||| Sbjct: 415 ggaggagaagcactggaactgcagct 440
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 cggtggtgttcctggcgctgcg 327 |||||||||||||||||||||| Sbjct: 4217344 cggtggtgttcctggcgctgcg 4217323
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.55 Identities = 76/94 (80%) Strand = Plus / Minus Query: 104 aggtgctgctgccgatcgtcgccggcacagagccgatcgaggcgtccatccccatcgaca 163 |||||||| ||||||||| ||| || |||||||| ||||| |||| || ||||| Sbjct: 19481510 aggtgctggtgccgatcgcgagcgggacggagccgatggaggccgtcatcaccgtcgacg 19481451 Query: 164 tcctccgccgcgccggcgccgacgttaccgtcgc 197 | |||||||||||||| |||||||| ||||||| Sbjct: 19481450 tgctccgccgcgccggggccgacgtctccgtcgc 19481417
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 44.1 bits (22), Expect = 0.55 Identities = 76/94 (80%) Strand = Plus / Minus Query: 104 aggtgctgctgccgatcgtcgccggcacagagccgatcgaggcgtccatccccatcgaca 163 |||||||| ||||||||| ||| || |||||||| ||||| |||| || ||||| Sbjct: 99919 aggtgctggtgccgatcgcgagcgggacggagccgatggaggccgtcatcaccgtcgacg 99860 Query: 164 tcctccgccgcgccggcgccgacgttaccgtcgc 197 | |||||||||||||| |||||||| ||||||| Sbjct: 99859 tgctccgccgcgccggggccgacgtctccgtcgc 99826
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 522 gtggtggtggacggcaacgccgtgac 547 |||||||||||||||||| ||||||| Sbjct: 706392 gtggtggtggacggcaacaccgtgac 706417
>ref|NM_196667.1| Oryza sativa (japonica cultivar-group) putative lycosylation enzyme-like protein (OSJNBb0040I11.3), mRNA Length = 1341 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 gacatcctccgccgcgccggcgccg 184 |||||||||||||||| |||||||| Sbjct: 1135 gacatcctccgccgcgacggcgccg 1159
>ref|NM_190776.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2283 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgccgcgccggcgccgacgtt 189 ||||||||||||||||||||| Sbjct: 2049 cgccgcgccggcgccgacgtt 2029
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 cccatcgacatcctccgccgcgccggcgccgac 186 |||||||||||| ||||||||| ||||| |||| Sbjct: 93533 cccatcgacatcgtccgccgcggcggcgacgac 93565
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 tccgccgcgccggcgccgacg 187 ||||||||||||||||||||| Sbjct: 3461405 tccgccgcgccggcgccgacg 3461425
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ctccgccgcgccggcgccgac 186 ||||||||||||||||||||| Sbjct: 151449 ctccgccgcgccggcgccgac 151429
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 cccatcgacatcctccgccgcgccggcgccgac 186 |||||||||||| ||||||||| ||||| |||| Sbjct: 17025877 cccatcgacatcgtccgccgcggcggcgacgac 17025909
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 gacatcctccgccgcgccggcgccg 184 |||||||||||||||| |||||||| Sbjct: 15110057 gacatcctccgccgcgacggcgccg 15110081
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 gacatcctccgccgcgccggcgccg 184 |||||||||||||||| |||||||| Sbjct: 18670 gacatcctccgccgcgacggcgccg 18694
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgccgcgccggcgccgacgtt 189 ||||||||||||||||||||| Sbjct: 107665 cgccgcgccggcgccgacgtt 107645
>dbj|AK105017.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G02, full insert sequence Length = 1713 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 gacatcctccgccgcgccggcgccg 184 |||||||||||||||| |||||||| Sbjct: 1273 gacatcctccgccgcgacggcgccg 1297
>dbj|AK099470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023O14, full insert sequence Length = 2549 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgccgcgccggcgccgacgtt 189 ||||||||||||||||||||| Sbjct: 2100 cgccgcgccggcgccgacgtt 2080
>dbj|AK099469.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023O13, full insert sequence Length = 2549 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgccgcgccggcgccgacgtt 189 ||||||||||||||||||||| Sbjct: 2100 cgccgcgccggcgccgacgtt 2080
>dbj|AK071270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087N08, full insert sequence Length = 1719 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 gacatcctccgccgcgccggcgccg 184 |||||||||||||||| |||||||| Sbjct: 1278 gacatcctccgccgcgacggcgccg 1302
>dbj|AK062271.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A07, full insert sequence Length = 1704 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgccgcgccggcgccgacgtt 189 ||||||||||||||||||||| Sbjct: 1351 cgccgcgccggcgccgacgtt 1331
>dbj|AK061419.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-F02, full insert sequence Length = 1704 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 gacatcctccgccgcgccggcgccg 184 |||||||||||||||| |||||||| Sbjct: 1287 gacatcctccgccgcgacggcgccg 1311
>dbj|AB078882.1| Triticum aestivum mRNA for alternative oxidase, complete cds Length = 1119 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 tcctccgccgcgccggcgccg 184 ||||||||||||||||||||| Sbjct: 64 tcctccgccgcgccggcgccg 84
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 gacatcctccgccgcgccggcgccg 184 |||||||||||||||| |||||||| Sbjct: 15118298 gacatcctccgccgcgacggcgccg 15118322
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 cccatcgacatcctccgccgcgccggcgccgac 186 |||||||||||| ||||||||| ||||| |||| Sbjct: 17120578 cccatcgacatcgtccgccgcggcggcgacgac 17120610
>gb|AC167012.3| Mus musculus BAC clone RP23-416A5 from chromosome 13, complete sequence Length = 193916 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ctggctttggtggaacagct 601 |||||||||||||||||||| Sbjct: 138387 ctggctttggtggaacagct 138368
>ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa8576 predicted mRNA Length = 1248 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 172 ccgccgcgccggcgccgacg 153
>ref|XM_483451.1| Oryza sativa (japonica cultivar-group), mRNA Length = 771 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 501 cctccgccgcgccggcgccg 482
>ref|XM_463821.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1742 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ccatcgacatcctccgccgcgccg 178 |||||||| ||||||||||||||| Sbjct: 457 ccatcgacctcctccgccgcgccg 480
>ref|NM_193226.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 490 cctccgccgcgccggcgccg 471
>gb|AF039048.2| Caenorhabditis elegans cosmid F16B4, complete sequence Length = 43814 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 509 cgtggacgcgaacgtggtggtggacggc 536 |||||||| | ||||||||||||||||| Sbjct: 12164 cgtggacgtggacgtggtggtggacggc 12191
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18, complete sequence Length = 156643 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 43455 cctccgccgcgccggcgccg 43436
>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence Length = 99587 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 30727 cctccgccgcgccggcgccg 30708
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 gctgcaccgccgctggcgtt 425 |||||||||||||||||||| Sbjct: 1366925 gctgcaccgccgctggcgtt 1366906
>gb|AY340220.1| Oryza sativa (japonica cultivar-group) hydroperoxide lyase (HPL1) gene, complete cds Length = 1731 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ccatcgacatcctccgccgcgccg 178 |||||||| ||||||||||||||| Sbjct: 470 ccatcgacctcctccgccgcgccg 493
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 522 gtggtggtggacggcaacgccgtg 545 |||||||||||| ||||||||||| Sbjct: 39586 gtggtggtggactgcaacgccgtg 39563
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 24105753 ccgccgcgccggcgccgacg 24105734
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 26294367 cctccgccgcgccggcgccg 26294348
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gctgctgccgatcgtcgccg 127 |||||||||||||||||||| Sbjct: 8734829 gctgctgccgatcgtcgccg 8734810
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 28615663 cctccgccgcgccggcgccg 28615644
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ccatcgacatcctccgccgcgccg 178 |||||||| ||||||||||||||| Sbjct: 555035 ccatcgacctcctccgccgcgccg 555058
>gb|AC104840.2| Homo sapiens BAC clone RP11-10E9 from 4, complete sequence Length = 159946 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cttcccctaagaaggtgctg 111 |||||||||||||||||||| Sbjct: 42253 cttcccctaagaaggtgctg 42272
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1029_F04 Length = 141834 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 90993 cctccgccgcgccggcgccg 91012
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 84097 ccgccgcgccggcgccgacg 84078
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 139581 ccgccgcgccggcgccgacg 139562
>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039C01 Length = 151054 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gctgctgccgatcgtcgccg 127 |||||||||||||||||||| Sbjct: 93470 gctgctgccgatcgtcgccg 93451
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0501G04 Length = 156603 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ccatcgacatcctccgccgcgccg 178 |||||||| ||||||||||||||| Sbjct: 33088 ccatcgacctcctccgccgcgccg 33111
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 4175528 ccgccgcgccggcgccgacg 4175547
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 23948 cctccgccgcgccggcgccg 23929
>emb|AJ234451.1|HVU234451 Hordeum vulgare partial mRNA; clone cMWG0773 Length = 492 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 ggtgctgctgccgatcgtcgccgg 128 |||||||| ||||||||||||||| Sbjct: 442 ggtgctgcggccgatcgtcgccgg 419
>dbj|AK111350.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G06, full insert sequence Length = 1096 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 216 cctccgccgcgccggcgccg 197
>dbj|AK105694.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C08, full insert sequence Length = 1742 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ccatcgacatcctccgccgcgccg 178 |||||||| ||||||||||||||| Sbjct: 457 ccatcgacctcctccgccgcgccg 480
>dbj|AK100012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140G07, full insert sequence Length = 1646 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ccatcgacatcctccgccgcgccg 178 |||||||| ||||||||||||||| Sbjct: 400 ccatcgacctcctccgccgcgccg 423
>dbj|AK072801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138N11, full insert sequence Length = 772 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctccgccgcgccggcgccg 184 |||||||||||||||||||| Sbjct: 502 cctccgccgcgccggcgccg 483
>dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A01, full insert sequence Length = 2351 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 890 ccgccgcgccggcgccgacg 871
>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0021A04 Length = 50487 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 31372 ccgccgcgccggcgccgacg 31353
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 24033959 ccgccgcgccggcgccgacg 24033940
>gb|AC159261.4| Mus musculus BAC clone RP24-80C13 from chromosome 13, complete sequence Length = 230437 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ctggctttggtggaacagct 601 |||||||||||||||||||| Sbjct: 110093 ctggctttggtggaacagct 110074
>emb|AL772418.4|CNS08C9W Oryza sativa chromosome 12, . Partial sequence from BAC OJ1473_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 32463 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 20827 ccgccgcgccggcgccgacg 20808
>emb|AM050332.1| Unidentified microorganism phagemid clone pBKR.41 Length = 2802 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 508 ccgtggacgcgaacgtggtggtgg 531 |||||| ||||||||||||||||| Sbjct: 168 ccgtgggcgcgaacgtggtggtgg 191
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccgccgcgccggcgccgacg 187 |||||||||||||||||||| Sbjct: 98308 ccgccgcgccggcgccgacg 98289 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,251,684 Number of Sequences: 3902068 Number of extensions: 4251684 Number of successful extensions: 85751 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83759 Number of HSP's gapped (non-prelim): 1982 length of query: 631 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 608 effective length of database: 17,143,297,704 effective search space: 10423125004032 effective search space used: 10423125004032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
