Clone Name | bah62l14 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_476028.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2301 Score = 480 bits (242), Expect = e-132 Identities = 494/578 (85%) Strand = Plus / Plus Query: 33 aaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtgctt 92 ||||||||||||||||| |||||||| ||| ||||| ||||| ||||||| ||| ||||| Sbjct: 1252 aaatcattcatccaaggttttcttccaggaattgctttgaaggtcttccttatattgctt 1311 Query: 93 ccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcactagag 152 ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| Sbjct: 1312 ccaactatactgatgtttatgtctaagtttgaaggattaatatcacagtcatcactggag 1371 Query: 153 cgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagcatt 212 |||||| |||| || || |||| ||| |||||||||||||||||||||||||| ||||| Sbjct: 1372 cgaagatctgcatctaaatattatatcttcttgttcttcaatgtatttttgggaagcatc 1431 Query: 213 gttacaggatctgctttggagcagcttaatacctacctccatgcgtcagctaatgacata 272 ||||||||||||||||| || |||||||| | ||| | ||| ||| || ||||| ||| Sbjct: 1432 gttacaggatctgctttagatcagcttaaggcatacattcatcagtcggcaaatgaaata 1491 Query: 273 ccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgtaatg 332 || || | ||| ||||||||||| ||||||| ||| || |||||||||||||| |||||| Sbjct: 1492 ccgagaaccatcggtgtagccattccaatgagggcgacttttttcataacatatgtaatg 1551 Query: 333 gtcgatggttggactggtgtagctcttgaaatactgagaataagggcatttgtactatac 392 || || |||||||||||||||||| ||||||| ||||| | |||||| || || | | | Sbjct: 1552 gttgacggttggactggtgtagctggtgaaatattgagattgagggcacttataatcttc 1611 Query: 393 cacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggatccg 452 || |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct: 1612 catttgaaaaactttttcttggtgaagactgaaaaggacagagaagaggcaatggatcct 1671 Query: 453 ggcagtatctgtttttactggtctgagcctcgaatacagctatatttcttgcttggtctt 512 || |||||||||||| | |||| ||| || || ||||||||||||||||| ||||| ||| Sbjct: 1672 ggtagtatctgttttgattggtgtgaaccacgtatacagctatatttcttacttggcctt 1731 Query: 513 gtgtatgctgcagtgacaccgctcttgctaccttttatactggtgttctttgcgttggga 572 || ||||||| ||||||||| | ||||| ||||| ||| |||| ||||| | | ||| | Sbjct: 1732 gtctatgctgtggtgacaccgttattgcttcctttcatattggtattcttcgggctggca 1791 Query: 573 tacgttgtctaccgccatcagatcattaatgtctacaa 610 || |||||||||||||| ||||| || ||||||||||| Sbjct: 1792 tatgttgtctaccgccaccagataataaatgtctacaa 1829
>dbj|AK073648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048M19, full insert sequence Length = 2681 Score = 480 bits (242), Expect = e-132 Identities = 494/578 (85%) Strand = Plus / Plus Query: 33 aaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtgctt 92 ||||||||||||||||| |||||||| ||| ||||| ||||| ||||||| ||| ||||| Sbjct: 1429 aaatcattcatccaaggttttcttccaggaattgctttgaaggtcttccttatattgctt 1488 Query: 93 ccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcactagag 152 ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| Sbjct: 1489 ccaactatactgatgtttatgtctaagtttgaaggattaatatcacagtcatcactggag 1548 Query: 153 cgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagcatt 212 |||||| |||| || || |||| ||| |||||||||||||||||||||||||| ||||| Sbjct: 1549 cgaagatctgcatctaaatattatatcttcttgttcttcaatgtatttttgggaagcatc 1608 Query: 213 gttacaggatctgctttggagcagcttaatacctacctccatgcgtcagctaatgacata 272 ||||||||||||||||| || |||||||| | ||| | ||| ||| || ||||| ||| Sbjct: 1609 gttacaggatctgctttagatcagcttaaggcatacattcatcagtcggcaaatgaaata 1668 Query: 273 ccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgtaatg 332 || || | ||| ||||||||||| ||||||| ||| || |||||||||||||| |||||| Sbjct: 1669 ccgagaaccatcggtgtagccattccaatgagggcgacttttttcataacatatgtaatg 1728 Query: 333 gtcgatggttggactggtgtagctcttgaaatactgagaataagggcatttgtactatac 392 || || |||||||||||||||||| ||||||| ||||| | |||||| || || | | | Sbjct: 1729 gttgacggttggactggtgtagctggtgaaatattgagattgagggcacttataatcttc 1788 Query: 393 cacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggatccg 452 || |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct: 1789 catttgaaaaactttttcttggtgaagactgaaaaggacagagaagaggcaatggatcct 1848 Query: 453 ggcagtatctgtttttactggtctgagcctcgaatacagctatatttcttgcttggtctt 512 || |||||||||||| | |||| ||| || || ||||||||||||||||| ||||| ||| Sbjct: 1849 ggtagtatctgttttgattggtgtgaaccacgtatacagctatatttcttacttggcctt 1908 Query: 513 gtgtatgctgcagtgacaccgctcttgctaccttttatactggtgttctttgcgttggga 572 || ||||||| ||||||||| | ||||| ||||| ||| |||| ||||| | | ||| | Sbjct: 1909 gtctatgctgtggtgacaccgttattgcttcctttcatattggtattcttcgggctggca 1968 Query: 573 tacgttgtctaccgccatcagatcattaatgtctacaa 610 || |||||||||||||| ||||| || ||||||||||| Sbjct: 1969 tatgttgtctaccgccaccagataataaatgtctacaa 2006
>dbj|AK067992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122B14, full insert sequence Length = 2850 Score = 480 bits (242), Expect = e-132 Identities = 494/578 (85%) Strand = Plus / Plus Query: 33 aaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtgctt 92 ||||||||||||||||| |||||||| ||| ||||| ||||| ||||||| ||| ||||| Sbjct: 1484 aaatcattcatccaaggttttcttccaggaattgctttgaaggtcttccttatattgctt 1543 Query: 93 ccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcactagag 152 ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| Sbjct: 1544 ccaactatactgatgtttatgtctaagtttgaaggattaatatcacagtcatcactggag 1603 Query: 153 cgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagcatt 212 |||||| |||| || || |||| ||| |||||||||||||||||||||||||| ||||| Sbjct: 1604 cgaagatctgcatctaaatattatatcttcttgttcttcaatgtatttttgggaagcatc 1663 Query: 213 gttacaggatctgctttggagcagcttaatacctacctccatgcgtcagctaatgacata 272 ||||||||||||||||| || |||||||| | ||| | ||| ||| || ||||| ||| Sbjct: 1664 gttacaggatctgctttagatcagcttaaggcatacattcatcagtcggcaaatgaaata 1723 Query: 273 ccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgtaatg 332 || || | ||| ||||||||||| ||||||| ||| || |||||||||||||| |||||| Sbjct: 1724 ccgagaaccatcggtgtagccattccaatgagggcgacttttttcataacatatgtaatg 1783 Query: 333 gtcgatggttggactggtgtagctcttgaaatactgagaataagggcatttgtactatac 392 || || |||||||||||||||||| ||||||| ||||| | |||||| || || | | | Sbjct: 1784 gttgacggttggactggtgtagctggtgaaatattgagattgagggcacttataatcttc 1843 Query: 393 cacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggatccg 452 || |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct: 1844 catttgaaaaactttttcttggtgaagactgaaaaggacagagaagaggcaatggatcct 1903 Query: 453 ggcagtatctgtttttactggtctgagcctcgaatacagctatatttcttgcttggtctt 512 || |||||||||||| | |||| ||| || || ||||||||||||||||| ||||| ||| Sbjct: 1904 ggtagtatctgttttgattggtgtgaaccacgtatacagctatatttcttacttggcctt 1963 Query: 513 gtgtatgctgcagtgacaccgctcttgctaccttttatactggtgttctttgcgttggga 572 || ||||||| ||||||||| | ||||| ||||| ||| |||| ||||| | | ||| | Sbjct: 1964 gtctatgctgtggtgacaccgttattgcttcctttcatattggtattcttcgggctggca 2023 Query: 573 tacgttgtctaccgccatcagatcattaatgtctacaa 610 || |||||||||||||| ||||| || ||||||||||| Sbjct: 2024 tatgttgtctaccgccaccagataataaatgtctacaa 2061
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 248 bits (125), Expect = 2e-62 Identities = 260/305 (85%) Strand = Plus / Plus Query: 285 ggtgtagccataccaatgaaggcaacatttttcataacatacgtaatggtcgatggttgg 344 ||||||||||| ||||||| ||| || |||||||||||||| |||||||| || |||||| Sbjct: 42236 ggtgtagccattccaatgagggcgacttttttcataacatatgtaatggttgacggttgg 42295 Query: 345 actggtgtagctcttgaaatactgagaataagggcatttgtactataccacttgaaaaac 404 |||||||||||| ||||||| ||||| | |||||| || || | | ||| ||||||||| Sbjct: 42296 actggtgtagctggtgaaatattgagattgagggcacttataatcttccatttgaaaaac 42355 Query: 405 tttttcttggtcaagacggagaaggacagagaagaggcaatggatccgggcagtatctgt 464 ||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||||| Sbjct: 42356 tttttcttggtgaagactgaaaaggacagagaagaggcaatggatcctggtagtatctgt 42415 Query: 465 ttttactggtctgagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgca 524 ||| | |||| ||| || || ||||||||||||||||| ||||| ||||| ||||||| Sbjct: 42416 tttgattggtgtgaaccacgtatacagctatatttcttacttggccttgtctatgctgtg 42475 Query: 525 gtgacaccgctcttgctaccttttatactggtgttctttgcgttgggatacgttgtctac 584 ||||||||| | ||||| ||||| ||| |||| ||||| | | ||| ||| ||||||||| Sbjct: 42476 gtgacaccgttattgcttcctttcatattggtattcttcgggctggcatatgttgtctac 42535 Query: 585 cgcca 589 ||||| Sbjct: 42536 cgcca 42540 Score = 240 bits (121), Expect = 4e-60 Identities = 187/209 (89%) Strand = Plus / Plus Query: 33 aaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtgctt 92 ||||||||||||||||| |||||||| ||| ||||| ||||| ||||||| ||| ||||| Sbjct: 41104 aaatcattcatccaaggttttcttccaggaattgctttgaaggtcttccttatattgctt 41163 Query: 93 ccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcactagag 152 ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| Sbjct: 41164 ccaactatactgatgtttatgtctaagtttgaaggattaatatcacagtcatcactggag 41223 Query: 153 cgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagcatt 212 |||||| |||| || || |||| ||| |||||||||||||||||||||||||| ||||| Sbjct: 41224 cgaagatctgcatctaaatattatatcttcttgttcttcaatgtatttttgggaagcatc 41283 Query: 213 gttacaggatctgctttggagcagcttaa 241 ||||||||||||||||| || |||||||| Sbjct: 41284 gttacaggatctgctttagatcagcttaa 41312
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 248 bits (125), Expect = 2e-62 Identities = 260/305 (85%) Strand = Plus / Plus Query: 285 ggtgtagccataccaatgaaggcaacatttttcataacatacgtaatggtcgatggttgg 344 ||||||||||| ||||||| ||| || |||||||||||||| |||||||| || |||||| Sbjct: 29394211 ggtgtagccattccaatgagggcgacttttttcataacatatgtaatggttgacggttgg 29394270 Query: 345 actggtgtagctcttgaaatactgagaataagggcatttgtactataccacttgaaaaac 404 |||||||||||| ||||||| ||||| | |||||| || || | | ||| ||||||||| Sbjct: 29394271 actggtgtagctggtgaaatattgagattgagggcacttataatcttccatttgaaaaac 29394330 Query: 405 tttttcttggtcaagacggagaaggacagagaagaggcaatggatccgggcagtatctgt 464 ||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||||| Sbjct: 29394331 tttttcttggtgaagactgaaaaggacagagaagaggcaatggatcctggtagtatctgt 29394390 Query: 465 ttttactggtctgagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgca 524 ||| | |||| ||| || || ||||||||||||||||| ||||| ||||| ||||||| Sbjct: 29394391 tttgattggtgtgaaccacgtatacagctatatttcttacttggccttgtctatgctgtg 29394450 Query: 525 gtgacaccgctcttgctaccttttatactggtgttctttgcgttgggatacgttgtctac 584 ||||||||| | ||||| ||||| ||| |||| ||||| | | ||| ||| ||||||||| Sbjct: 29394451 gtgacaccgttattgcttcctttcatattggtattcttcgggctggcatatgttgtctac 29394510 Query: 585 cgcca 589 ||||| Sbjct: 29394511 cgcca 29394515 Score = 240 bits (121), Expect = 4e-60 Identities = 187/209 (89%) Strand = Plus / Plus Query: 33 aaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtgctt 92 ||||||||||||||||| |||||||| ||| ||||| ||||| ||||||| ||| ||||| Sbjct: 29393079 aaatcattcatccaaggttttcttccaggaattgctttgaaggtcttccttatattgctt 29393138 Query: 93 ccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcactagag 152 ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| Sbjct: 29393139 ccaactatactgatgtttatgtctaagtttgaaggattaatatcacagtcatcactggag 29393198 Query: 153 cgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagcatt 212 |||||| |||| || || |||| ||| |||||||||||||||||||||||||| ||||| Sbjct: 29393199 cgaagatctgcatctaaatattatatcttcttgttcttcaatgtatttttgggaagcatc 29393258 Query: 213 gttacaggatctgctttggagcagcttaa 241 ||||||||||||||||| || |||||||| Sbjct: 29393259 gttacaggatctgctttagatcagcttaa 29393287 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 300 atgaaggcaacatttttcataacatacgtaatggtcgatggttggactggtgt 352 ||||| |||||||||||||| ||||| |||||||| ||||| ||| ||||||| Sbjct: 19020732 atgaaagcaacatttttcatcacatatgtaatggttgatggctgggctggtgt 19020784
>dbj|AK103608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133I03, full insert sequence Length = 2859 Score = 212 bits (107), Expect = 1e-51 Identities = 404/503 (80%) Strand = Plus / Plus Query: 30 attaaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtg 89 |||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| ||| || Sbjct: 1665 attaaatcattcatccaaggatttctgccaggaattgctctgaagattttccttatattg 1724 Query: 90 cttccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcacta 149 || || | ||| | ||||| ||||| | |||||||||||| ||| ||| ||||| Sbjct: 1725 ctccctagcatattaatgtttatgtctaaagttgaaggattgacatcggtgtcctcactg 1784 Query: 150 gagcgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagc 209 ||| | ||| |||| | ||||| | ||| ||||||||||| |||||||| ||||| ||| Sbjct: 1785 gagaggagatctgcttttaagtactatatcttcttgttctttaatgtattcttgggaagc 1844 Query: 210 attgttacaggatctgctttggagcagcttaatacctacctccatgcgtcagctaatgac 269 ||| || ||||||||||||| |||||||| || || | || || ||||| ||||| Sbjct: 1845 attattgcaggatctgctttagagcagctcaaaacatttcttcaccaatcagcaaatgaa 1904 Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| ||||||| ||| || |||||||| ||||| ||||| |||||||| ||| Sbjct: 1905 ataccaaggacaattggtgaagcaattccaatgaaagcaaccttttttataacatatgta 1964 Query: 330 atggtcgatggttggactggtgtagctcttgaaatactgagaataagggcatttgtacta 389 ||||| ||||||||| |||| |||||| |||||| | ||| | | |||| || | Sbjct: 1965 atggttgatggttgggctggggtagctggtgaaattttaagattgaaaccattgataatc 2024 Query: 390 taccacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggat 449 | |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct: 2025 ttccacttgaaaaactttttcttggtcaagactgagaaagacagagaagaagcaatggac 2084 Query: 450 ccgggcagtatctgtttttactggtctgagcctcgaatacagctatatttcttgcttggt 509 || || || || ||||| ||| |||||||| ||||||||| ||||||||||| || Sbjct: 2085 cctggaagcattggttttgactcaaatgagcctcaaatacagctctatttcttgctcgga 2144 Query: 510 cttgtgtatgctgcagtgacacc 532 ||||| ||||||| |||||||| Sbjct: 2145 cttgtctatgctgtggtgacacc 2167
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03, complete sequence Length = 45160 Score = 210 bits (106), Expect = 4e-51 Identities = 166/186 (89%) Strand = Plus / Minus Query: 33 aaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtgctt 92 ||||||||||||||||| |||||||| ||| ||||| ||||| ||||||| ||| ||||| Sbjct: 186 aaatcattcatccaaggttttcttccaggaattgctttgaaggtcttccttatattgctt 127 Query: 93 ccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcactagag 152 ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| Sbjct: 126 ccaactatactgatgtttatgtctaagtttgaaggattaatatcacagtcatcactggag 67 Query: 153 cgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagcatt 212 |||||| |||| || || |||| ||| |||||||||||||||||||||||||| ||||| Sbjct: 66 cgaagatctgcatctaaatattatatcttcttgttcttcaatgtatttttgggaagcatc 7 Query: 213 gttaca 218 |||||| Sbjct: 6 gttaca 1
>ref|NM_193232.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1941 Score = 141 bits (71), Expect = 3e-30 Identities = 215/263 (81%) Strand = Plus / Plus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| ||||||| ||| || |||||||| ||||| ||||| |||||||| ||| Sbjct: 1123 ataccaaggacaattggtgaagcaattccaatgaaagcaaccttttttataacatatgta 1182 Query: 330 atggtcgatggttggactggtgtagctcttgaaatactgagaataagggcatttgtacta 389 ||||| ||||||||| |||| |||||| |||||| | ||| | | |||| || | Sbjct: 1183 atggttgatggttgggctggggtagctggtgaaattttaagattgaaaccattgataatc 1242 Query: 390 taccacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggat 449 | |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct: 1243 ttccacttgaaaaactttttcttggtcaagactgagaaagacagagaagaagcaatggac 1302 Query: 450 ccgggcagtatctgtttttactggtctgagcctcgaatacagctatatttcttgcttggt 509 || || || || ||||| ||| |||||||| ||||||||| ||||||||||| || Sbjct: 1303 cctggaagcattggttttgactcaaatgagcctcaaatacagctctatttcttgctcgga 1362 Query: 510 cttgtgtatgctgcagtgacacc 532 ||||| ||||||| |||||||| Sbjct: 1363 cttgtctatgctgtggtgacacc 1385
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 141 bits (71), Expect = 3e-30 Identities = 215/263 (81%) Strand = Plus / Minus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| ||||||| ||| || |||||||| ||||| ||||| |||||||| ||| Sbjct: 19393797 ataccaaggacaattggtgaagcaattccaatgaaagcaaccttttttataacatatgta 19393738 Query: 330 atggtcgatggttggactggtgtagctcttgaaatactgagaataagggcatttgtacta 389 ||||| ||||||||| |||| |||||| |||||| | ||| | | |||| || | Sbjct: 19393737 atggttgatggttgggctggggtagctggtgaaattttaagattgaaaccattgataatc 19393678 Query: 390 taccacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggat 449 | |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct: 19393677 ttccacttgaaaaactttttcttggtcaagactgagaaagacagagaagaagcaatggac 19393618 Query: 450 ccgggcagtatctgtttttactggtctgagcctcgaatacagctatatttcttgcttggt 509 || || || || ||||| ||| |||||||| ||||||||| ||||||||||| || Sbjct: 19393617 cctggaagcattggttttgactcaaatgagcctcaaatacagctctatttcttgctcgga 19393558 Query: 510 cttgtgtatgctgcagtgacacc 532 ||||| ||||||| |||||||| Sbjct: 19393557 cttgtctatgctgtggtgacacc 19393535 Score = 105 bits (53), Expect = 2e-19 Identities = 170/209 (81%) Strand = Plus / Minus Query: 30 attaaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtg 89 |||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| ||| || Sbjct: 19394750 attaaatcattcatccaaggatttctgccaggaattgctctgaagattttccttatattg 19394691 Query: 90 cttccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcacta 149 || || | ||| | ||||| ||||| | |||||||||||| ||| ||| ||||| Sbjct: 19394690 ctccctagcatattaatgtttatgtctaaagttgaaggattgacatcggtgtcctcactg 19394631 Query: 150 gagcgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagc 209 ||| | ||| |||| | ||||| | ||| ||||||||||| |||||||| ||||| ||| Sbjct: 19394630 gagaggagatctgcttttaagtactatatcttcttgttctttaatgtattcttgggaagc 19394571 Query: 210 attgttacaggatctgctttggagcagct 238 ||| || ||||||||||||| |||||||| Sbjct: 19394570 attattgcaggatctgctttagagcagct 19394542
>dbj|AP003449.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086A10 Length = 151071 Score = 141 bits (71), Expect = 3e-30 Identities = 215/263 (81%) Strand = Plus / Minus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| ||||||| ||| || |||||||| ||||| ||||| |||||||| ||| Sbjct: 2613 ataccaaggacaattggtgaagcaattccaatgaaagcaaccttttttataacatatgta 2554 Query: 330 atggtcgatggttggactggtgtagctcttgaaatactgagaataagggcatttgtacta 389 ||||| ||||||||| |||| |||||| |||||| | ||| | | |||| || | Sbjct: 2553 atggttgatggttgggctggggtagctggtgaaattttaagattgaaaccattgataatc 2494 Query: 390 taccacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggat 449 | |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct: 2493 ttccacttgaaaaactttttcttggtcaagactgagaaagacagagaagaagcaatggac 2434 Query: 450 ccgggcagtatctgtttttactggtctgagcctcgaatacagctatatttcttgcttggt 509 || || || || ||||| ||| |||||||| ||||||||| ||||||||||| || Sbjct: 2433 cctggaagcattggttttgactcaaatgagcctcaaatacagctctatttcttgctcgga 2374 Query: 510 cttgtgtatgctgcagtgacacc 532 ||||| ||||||| |||||||| Sbjct: 2373 cttgtctatgctgtggtgacacc 2351 Score = 105 bits (53), Expect = 2e-19 Identities = 170/209 (81%) Strand = Plus / Minus Query: 30 attaaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtg 89 |||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| ||| || Sbjct: 3566 attaaatcattcatccaaggatttctgccaggaattgctctgaagattttccttatattg 3507 Query: 90 cttccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcacta 149 || || | ||| | ||||| ||||| | |||||||||||| ||| ||| ||||| Sbjct: 3506 ctccctagcatattaatgtttatgtctaaagttgaaggattgacatcggtgtcctcactg 3447 Query: 150 gagcgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagc 209 ||| | ||| |||| | ||||| | ||| ||||||||||| |||||||| ||||| ||| Sbjct: 3446 gagaggagatctgcttttaagtactatatcttcttgttctttaatgtattcttgggaagc 3387 Query: 210 attgttacaggatctgctttggagcagct 238 ||| || ||||||||||||| |||||||| Sbjct: 3386 attattgcaggatctgctttagagcagct 3358
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1029_F04 Length = 141834 Score = 141 bits (71), Expect = 3e-30 Identities = 215/263 (81%) Strand = Plus / Minus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| ||||||| ||| || |||||||| ||||| ||||| |||||||| ||| Sbjct: 121802 ataccaaggacaattggtgaagcaattccaatgaaagcaaccttttttataacatatgta 121743 Query: 330 atggtcgatggttggactggtgtagctcttgaaatactgagaataagggcatttgtacta 389 ||||| ||||||||| |||| |||||| |||||| | ||| | | |||| || | Sbjct: 121742 atggttgatggttgggctggggtagctggtgaaattttaagattgaaaccattgataatc 121683 Query: 390 taccacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggat 449 | |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct: 121682 ttccacttgaaaaactttttcttggtcaagactgagaaagacagagaagaagcaatggac 121623 Query: 450 ccgggcagtatctgtttttactggtctgagcctcgaatacagctatatttcttgcttggt 509 || || || || ||||| ||| |||||||| ||||||||| ||||||||||| || Sbjct: 121622 cctggaagcattggttttgactcaaatgagcctcaaatacagctctatttcttgctcgga 121563 Query: 510 cttgtgtatgctgcagtgacacc 532 ||||| ||||||| |||||||| Sbjct: 121562 cttgtctatgctgtggtgacacc 121540 Score = 105 bits (53), Expect = 2e-19 Identities = 170/209 (81%) Strand = Plus / Minus Query: 30 attaaatcattcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtg 89 |||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| ||| || Sbjct: 122755 attaaatcattcatccaaggatttctgccaggaattgctctgaagattttccttatattg 122696 Query: 90 cttccaactatactgatgttcatgtcacagtttgaaggattgatatcacagtcatcacta 149 || || | ||| | ||||| ||||| | |||||||||||| ||| ||| ||||| Sbjct: 122695 ctccctagcatattaatgtttatgtctaaagttgaaggattgacatcggtgtcctcactg 122636 Query: 150 gagcgaagaactgcgtccaagtattttatattcttgttcttcaatgtatttttggggagc 209 ||| | ||| |||| | ||||| | ||| ||||||||||| |||||||| ||||| ||| Sbjct: 122635 gagaggagatctgcttttaagtactatatcttcttgttctttaatgtattcttgggaagc 122576 Query: 210 attgttacaggatctgctttggagcagct 238 ||| || ||||||||||||| |||||||| Sbjct: 122575 attattgcaggatctgctttagagcagct 122547
>gb|BT013808.1| Lycopersicon esculentum clone 132729F, mRNA sequence Length = 2674 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 390 taccacttgaaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggat 449 ||||||||||| |||||||||||||| |||||||| || || |||||||||||||||||| Sbjct: 1666 taccacttgaagaactttttcttggttaagacggaaaaagatagagaagaggcaatggat 1725 Query: 450 cc 451 || Sbjct: 1726 cc 1727 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 39 ttcatccaagggtttcttcctggacttgctctgaagatcttcctcatagtgcttccaact 98 ||||||||||| ||||| ||||| ||||| |||||||||| |||||| | || |||||| Sbjct: 1315 ttcatccaaggttttctacctgggattgctttgaagatctttctcatatttctgccaact 1374 Query: 99 atactgatg 107 ||| ||||| Sbjct: 1375 atattgatg 1383
>ref|NM_197907.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0056G17.14), mRNA Length = 2585 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| |||||| ||||| ||||||||||| || |||||||| || |||||| || Sbjct: 1486 ataccaaggaccattggagtagctataccaatgaaagctacattttttatgacatacata 1545 Query: 330 atggt 334 ||||| Sbjct: 1546 atggt 1550
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| |||||| ||||| ||||||||||| || |||||||| || |||||| || Sbjct: 23779 ataccaaggaccattggagtagctataccaatgaaagctacattttttatgacatacata 23720 Query: 330 atggt 334 ||||| Sbjct: 23719 atggt 23715
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| |||||| ||||| ||||||||||| || |||||||| || |||||| || Sbjct: 22569110 ataccaaggaccattggagtagctataccaatgaaagctacattttttatgacatacata 22569051 Query: 330 atggt 334 ||||| Sbjct: 22569050 atggt 22569046
>dbj|AK102587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098F01, full insert sequence Length = 2714 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| |||||| ||||| ||||||||||| || |||||||| || |||||| || Sbjct: 1615 ataccaaggaccattggagtagctataccaatgaaagctacattttttatgacatacata 1674 Query: 330 atggt 334 ||||| Sbjct: 1675 atggt 1679
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 270 ataccaaggatcattggtgtagccataccaatgaaggcaacatttttcataacatacgta 329 |||||||||| |||||| ||||| ||||||||||| || |||||||| || |||||| || Sbjct: 22581578 ataccaaggaccattggagtagctataccaatgaaagctacattttttatgacatacata 22581519 Query: 330 atggt 334 ||||| Sbjct: 22581518 atggt 22581514
>ref|NM_116524.1| Arabidopsis thaliana unknown protein AT4G02900 mRNA, complete cds Length = 2358 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 297 ccaatgaaggcaacatttttcataacatacgtaatggtcgatggttggactgg 349 ||||||||||| ||||||||||| ||||| | ||||||||||||||| |||| Sbjct: 1519 ccaatgaaggccacatttttcatcacatatatcatggtcgatggttgggctgg 1571 Score = 40.1 bits (20), Expect = 8.3 Identities = 71/88 (80%) Strand = Plus / Plus Query: 42 atccaagggtttcttcctggacttgctctgaagatcttcctcatagtgcttccaactata 101 ||||||||||||||||| ||| | || | ||||| || ||||| | ||||||||||| Sbjct: 1264 atccaagggtttcttccaggaatagcgttaaagatttttctcatcatacttccaactatt 1323 Query: 102 ctgatgttcatgtcacagtttgaaggat 129 |||||| |||||||| ||||||||| Sbjct: 1324 ctgatgacaatgtcacaaattgaaggat 1351
>gb|AC004044.1| Arabidopsis thaliana BAC T5J8 from chromosome IV, top arm, complete sequence Length = 98527 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 297 ccaatgaaggcaacatttttcataacatacgtaatggtcgatggttggactgg 349 ||||||||||| ||||||||||| ||||| | ||||||||||||||| |||| Sbjct: 83736 ccaatgaaggccacatttttcatcacatatatcatggtcgatggttgggctgg 83788 Score = 40.1 bits (20), Expect = 8.3 Identities = 71/88 (80%) Strand = Plus / Plus Query: 42 atccaagggtttcttcctggacttgctctgaagatcttcctcatagtgcttccaactata 101 ||||||||||||||||| ||| | || | ||||| || ||||| | ||||||||||| Sbjct: 83402 atccaagggtttcttccaggaatagcgttaaagatttttctcatcatacttccaactatt 83461 Query: 102 ctgatgttcatgtcacagtttgaaggat 129 |||||| |||||||| ||||||||| Sbjct: 83462 ctgatgacaatgtcacaaattgaaggat 83489
>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete sequence Length = 98913 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 297 ccaatgaaggcaacatttttcataacatacgtaatggtcgatggttggactgg 349 ||||||||||| ||||||||||| ||||| | ||||||||||||||| |||| Sbjct: 96695 ccaatgaaggccacatttttcatcacatatatcatggtcgatggttgggctgg 96643 Score = 40.1 bits (20), Expect = 8.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 42 atccaagggtttcttcctggacttgctctgaagatcttcctcatagtgcttccaactata 101 ||||||||||||||||| ||| | || | ||||| || ||||| | ||||||||||| Sbjct: 97029 atccaagggtttcttccaggaatagcgttaaagatttttctcatcatacttccaactatt 96970 Query: 102 ctgatgttcatgtcacagtttgaaggat 129 |||||| |||||||| ||||||||| Sbjct: 96969 ctgatgacaatgtcacaaattgaaggat 96942
>gb|AC132483.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0014C03, complete sequence Length = 143739 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 300 atgaaggcaacatttttcataacatacgtaatggtcgatggttggactggtgt 352 ||||| |||||||||||||| ||||| |||||||| ||||| ||| ||||||| Sbjct: 33375 atgaaagcaacatttttcatcacatatgtaatggttgatggctgggctggtgt 33427
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7 Length = 199615 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 297 ccaatgaaggcaacatttttcataacatacgtaatggtcgatggttggactgg 349 ||||||||||| ||||||||||| ||||| | ||||||||||||||| |||| Sbjct: 132406 ccaatgaaggccacatttttcatcacatatatcatggtcgatggttgggctgg 132458 Score = 40.1 bits (20), Expect = 8.3 Identities = 71/88 (80%) Strand = Plus / Plus Query: 42 atccaagggtttcttcctggacttgctctgaagatcttcctcatagtgcttccaactata 101 ||||||||||||||||| ||| | || | ||||| || ||||| | ||||||||||| Sbjct: 132072 atccaagggtttcttccaggaatagcgttaaagatttttctcatcatacttccaactatt 132131 Query: 102 ctgatgttcatgtcacagtttgaaggat 129 |||||| |||||||| ||||||||| Sbjct: 132132 ctgatgacaatgtcacaaattgaaggat 132159
>dbj|AK069074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005F15, full insert sequence Length = 2704 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 300 atgaaggcaacatttttcataacatacgtaatggtcgatggttggactggtgt 352 ||||| |||||||||||||| ||||| |||||||| ||||| ||| ||||||| Sbjct: 1826 atgaaagcaacatttttcatcacatatgtaatggttgatggctgggctggtgt 1878 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 591 cagatcattaatgtctacaa 610 |||||||||||||||||||| Sbjct: 2117 cagatcattaatgtctacaa 2136
>ref|NM_113057.1| Arabidopsis thaliana unknown protein AT3G21620 mRNA, complete cds Length = 2271 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 423 gagaaggacagagaagaggcaatggatcc 451 ||||||||||||||||| ||||||||||| Sbjct: 1645 gagaaggacagagaagaagcaatggatcc 1673
>gb|AY372423.1| Medicago truncatula B gene, partial sequence Length = 6574 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 480 cctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 |||| |||||| || |||||||||||||| ||||||||| ||| ||| ||||| Sbjct: 2456 cctcaaatacaactttatttcttgcttggccttgtgtattctgtagtcacacc 2508 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Plus Query: 297 ccaatgaaggcaacatttttcataacatacgtaatggtcgatgg 340 |||||||| ||||| || |||||||||||| ||||||| ||||| Sbjct: 2273 ccaatgaaagcaactttcttcataacatacataatggttgatgg 2316
>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE Length = 127675 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 480 cctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 |||| |||||| || |||||||||||||| ||||||||| ||| ||| ||||| Sbjct: 40786 cctcaaatacaactttatttcttgcttggccttgtgtattctgtagtcacacc 40734 Score = 48.1 bits (24), Expect = 0.034 Identities = 39/44 (88%) Strand = Plus / Minus Query: 297 ccaatgaaggcaacatttttcataacatacgtaatggtcgatgg 340 |||||||| ||||| || |||||||||||| ||||||| ||||| Sbjct: 40969 ccaatgaaagcaactttcttcataacatacataatggttgatgg 40926
>dbj|AK220939.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-52-J03 Length = 2555 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 423 gagaaggacagagaagaggcaatggatcc 451 ||||||||||||||||| ||||||||||| Sbjct: 1832 gagaaggacagagaagaagcaatggatcc 1860
>dbj|AB019232.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIL23 Length = 80818 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 423 gagaaggacagagaagaggcaatggatcc 451 ||||||||||||||||| ||||||||||| Sbjct: 49525 gagaaggacagagaagaagcaatggatcc 49497
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546, complete sequence Length = 107979 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 399 aaaaactttttcttggtcaagacggagaaggacagagaagaggcaatggatcc 451 |||||||| |||||||| ||||| || |||||| | ||||| ||||||||||| Sbjct: 46693 aaaaacttcttcttggtgaagactgaaaaggaccgcgaagaagcaatggatcc 46745 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 480 cctcgaatacagctatatttcttgcttggtcttgtgtatgc 520 |||| |||||| || |||||||||||||| ||||| ||||| Sbjct: 46774 cctcaaatacaactttatttcttgcttggccttgtatatgc 46814
>emb|AL391277.16| Human DNA sequence from clone RP11-357C3 on chromosome X, complete sequence Length = 194456 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 342 tggactggtgtagctcttgaaatactgaga 371 |||||||| ||||||| ||||||||||||| Sbjct: 40419 tggactggagtagctcatgaaatactgaga 40448
>emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chromosome 11 Contains the Trpv3 gene for transient receptor potential cation channel subfamily V member 3, the Aspa gene for aspartoacylase (aminoacylase) 2, a novel gene, the genes for olfactory receptor MOR135-11, 12, 13, 2, 1, three olfactory receptor MOR135 pseudogenes and a CpG island, complete sequence Length = 208137 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gatatcacagtcatcactagag 152 |||||||||||||||||||||| Sbjct: 38059 gatatcacagtcatcactagag 38080
>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020, complete sequence Length = 80920 Score = 44.1 bits (22), Expect = 0.53 Identities = 61/74 (82%) Strand = Plus / Plus Query: 492 ctatatttcttgcttggtcttgtgtatgctgcagtgacaccgctcttgctaccttttata 551 ||||||||| | ||||| |||||||||||| ||||| ||| || | || ||||| ||| Sbjct: 33862 ctatatttccttcttggaattgtgtatgctgtggtgactccgatccttctgcctttcata 33921 Query: 552 ctggtgttctttgc 565 ||||| |||||||| Sbjct: 33922 ctggtcttctttgc 33935
>gb|AC154644.2| Mus musculus BAC clone RP23-278G20 from chromosome 14, complete sequence Length = 175685 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ttgctctgaagatcttcctca 84 ||||||||||||||||||||| Sbjct: 23740 ttgctctgaagatcttcctca 23760
>gb|AC079033.12| Homo sapiens 12 BAC RP11-453L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150123 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 aaaactttttcttggtcaaga 420 ||||||||||||||||||||| Sbjct: 141332 aaaactttttcttggtcaaga 141312
>emb|CT025694.11| Mouse DNA sequence from clone RP24-66N5 on chromosome 14, complete sequence Length = 203022 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ttgctctgaagatcttcctca 84 ||||||||||||||||||||| Sbjct: 39534 ttgctctgaagatcttcctca 39554
>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete sequence Length = 205838 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 421 cggagaaggacagagaagagg 441 ||||||||||||||||||||| Sbjct: 198832 cggagaaggacagagaagagg 198812
>gb|M63194.1|PUULRNA Puumala virus CG1820 RNA-dependent RNA polymerase gene in L RNA segment Length = 6550 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 acctttaattgaagcagatac 28 ||||||||||||||||||||| Sbjct: 3198 acctttaattgaagcagatac 3178
>ref|NM_178965.1| Arabidopsis thaliana unknown protein AT4G04340 transcript variant AT4G04340.2 mRNA, complete cds Length = 2790 Score = 40.1 bits (20), Expect = 8.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 477 gagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 ||||||| |||||||| || ||| | ||||||||||| |||||| | |||||||| Sbjct: 1962 gagcctcagatacagctttacttccttcttggtcttgtctatgctcctgtgacacc 2017
>ref|NM_116672.2| Arabidopsis thaliana unknown protein AT4G04340 transcript variant AT4G04340.1 mRNA, complete cds Length = 2788 Score = 40.1 bits (20), Expect = 8.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 477 gagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 ||||||| |||||||| || ||| | ||||||||||| |||||| | |||||||| Sbjct: 1960 gagcctcagatacagctttacttccttcttggtcttgtctatgctcctgtgacacc 2015
>ref|NM_178966.1| Arabidopsis thaliana unknown protein AT4G04340 transcript variant AT4G04340.3 mRNA, complete cds Length = 3086 Score = 40.1 bits (20), Expect = 8.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 477 gagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 ||||||| |||||||| || ||| | ||||||||||| |||||| | |||||||| Sbjct: 2258 gagcctcagatacagctttacttccttcttggtcttgtctatgctcctgtgacacc 2313
>gb|AF069441.1| Arabidopsis thaliana BAC T19B17 from chromosome IV, near 19.3 cM, complete sequence Length = 105830 Score = 40.1 bits (20), Expect = 8.3 Identities = 47/56 (83%) Strand = Plus / Minus Query: 477 gagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 ||||||| |||||||| || ||| | ||||||||||| |||||| | |||||||| Sbjct: 62273 gagcctcagatacagctttacttccttcttggtcttgtctatgctcctgtgacacc 62218
>gb|AC127607.5| Rattus norvegicus BAC CH230-41K5 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 36313 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 ggagaaggacagagaagaggcaat 445 ||||||| |||||||||||||||| Sbjct: 20391 ggagaagaacagagaagaggcaat 20368
>gb|AF125313.2| Mus musculus chromosome X clones CT7-508o14, CT7-549H18, CT7-552o8, proximal part, complete sequence Length = 107641 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tccaagtattttatattctt 184 |||||||||||||||||||| Sbjct: 17423 tccaagtattttatattctt 17404
>gb|AC121313.8| Mus musculus chromosome 14, clone RP24-395N22, complete sequence Length = 131620 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ttgaagcagataccattaaa 35 |||||||||||||||||||| Sbjct: 14680 ttgaagcagataccattaaa 14699
>emb|CR932227.1|CNS0KYIH Ribonuclease with two RNaseIII domains, Paramecium tetraurelia macronuclear gene Length = 2121 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 atattcttgttcttcaatgt 196 |||||||||||||||||||| Sbjct: 2087 atattcttgttcttcaatgt 2068
>emb|AL353593.33| Human DNA sequence from clone RP5-1139B12 on chromosome 1q42.1-43 Contains part of the OBSCN gene for obscurin cytoskeletal calmodulin and titin-interacting RhoGEF protein and four CpG islands, complete sequence Length = 135964 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tctgctttggagcagcttaa 241 |||||||||||||||||||| Sbjct: 4847 tctgctttggagcagcttaa 4828
>gb|AY056305.1| Arabidopsis thaliana unknown protein (At4g04340) mRNA, complete cds Length = 2721 Score = 40.1 bits (20), Expect = 8.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 477 gagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 ||||||| |||||||| || ||| | ||||||||||| |||||| | |||||||| Sbjct: 1941 gagcctcagatacagctttacttccttcttggtcttgtctatgctcctgtgacacc 1996
>gb|AC118273.4| Homo sapiens chromosome 11, clone RP11-107P7, complete sequence Length = 187529 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gacagagaagaggcaatgga 448 |||||||||||||||||||| Sbjct: 42339 gacagagaagaggcaatgga 42358
>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12 Length = 199759 Score = 40.1 bits (20), Expect = 8.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 477 gagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 ||||||| |||||||| || ||| | ||||||||||| |||||| | |||||||| Sbjct: 47587 gagcctcagatacagctttacttccttcttggtcttgtctatgctcctgtgacacc 47642
>emb|AJ314898.1|HSA314898 Homo sapiens partial OBSCN gene for obscurin, exons 5-11 Length = 24545 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tctgctttggagcagcttaa 241 |||||||||||||||||||| Sbjct: 3677 tctgctttggagcagcttaa 3658
>gb|AC117746.6| Homo sapiens chromosome 11, clone RP11-159C12, complete sequence Length = 157527 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 gacagagaagaggcaatgga 448 |||||||||||||||||||| Sbjct: 124603 gacagagaagaggcaatgga 124584
>gb|AC073372.9| Homo sapiens chromosome 11 clone RP11-500D4, complete sequence Length = 180504 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 agtattttatattcttgttc 188 |||||||||||||||||||| Sbjct: 50987 agtattttatattcttgttc 50968
>gb|AY093209.1| Arabidopsis thaliana unknown protein (At4g04340) mRNA, complete cds Length = 2735 Score = 40.1 bits (20), Expect = 8.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 477 gagcctcgaatacagctatatttcttgcttggtcttgtgtatgctgcagtgacacc 532 ||||||| |||||||| || ||| | ||||||||||| |||||| | |||||||| Sbjct: 1960 gagcctcagatacagctttacttccttcttggtcttgtctatgctcctgtgacacc 2015
>gb|AC084851.2| Homo sapiens chromosome 11, clone CTD-2132H18, complete sequence Length = 76534 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gacagagaagaggcaatgga 448 |||||||||||||||||||| Sbjct: 52349 gacagagaagaggcaatgga 52368
>gb|AC148699.1| Macaca mulatta Major Histocompatibility Complex BAC MMU274L13, complete sequence Length = 210164 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 581 ctaccgccatcagatcattaatgt 604 |||||||||||| ||||||||||| Sbjct: 94714 ctaccgccatcacatcattaatgt 94691
>emb|AL114761.1|CNS01BW1 Botrytis cinerea strain T4 cDNA library Length = 636 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 168 aagtattttatattcttgttcttcaatgtatttttg 203 |||||||||||||| ||||| || ||| |||||||| Sbjct: 535 aagtattttatatttttgttttttaatttatttttg 570
>gb|AC154315.2| Mus musculus BAC clone RP23-348I6 from chromosome 14, complete sequence Length = 187052 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ttgaagcagataccattaaa 35 |||||||||||||||||||| Sbjct: 163346 ttgaagcagataccattaaa 163365
>gb|AC084633.1|CBRG45G04 Caenorhabditis briggsae cosmid G45G04, complete sequence Length = 43840 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ttcttcaatgtatttttggg 205 |||||||||||||||||||| Sbjct: 11732 ttcttcaatgtatttttggg 11713
>emb|AJ249082.2|PPL249082 Pleuronectes platessa UGT1 gene for UDP-glucuronosyltransferase Length = 4354 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 aggacagagaagaggcaatg 446 |||||||||||||||||||| Sbjct: 328 aggacagagaagaggcaatg 347
>emb|AJ249081.1|PPL249081 Pleuronectes platessa mRNA for UDP-glucuronosyltransferase-1 Length = 1655 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 aggacagagaagaggcaatg 446 |||||||||||||||||||| Sbjct: 10 aggacagagaagaggcaatg 29
>gb|AC021867.19| Homo sapiens 3 BAC RP11-220G20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146809 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 tatatttcttgcttggtctt 512 |||||||||||||||||||| Sbjct: 4462 tatatttcttgcttggtctt 4481
>dbj|AP004607.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-529A4, complete sequence Length = 160683 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gacagagaagaggcaatgga 448 |||||||||||||||||||| Sbjct: 159082 gacagagaagaggcaatgga 159101
>dbj|AP000827.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-716D19, complete sequence Length = 168579 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gacagagaagaggcaatgga 448 |||||||||||||||||||| Sbjct: 41163 gacagagaagaggcaatgga 41182
>dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-686G23, complete sequences Length = 177933 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 agtattttatattcttgttc 188 |||||||||||||||||||| Sbjct: 66308 agtattttatattcttgttc 66327
>dbj|AP003122.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-313I2, complete sequence Length = 137888 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 gacagagaagaggcaatgga 448 |||||||||||||||||||| Sbjct: 119236 gacagagaagaggcaatgga 119217
>dbj|AK113957.1| Ciona intestinalis cDNA, clone:cicl018l06, full insert sequence Length = 2364 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 tgcttggtcttgtgtatgct 521 |||||||||||||||||||| Sbjct: 283 tgcttggtcttgtgtatgct 264
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 383 tgtactataccacttgaaaaactt 406 |||||| ||||||||||||||||| Sbjct: 1353890 tgtactgtaccacttgaaaaactt 1353867
>gb|DQ146749.1| Uncultured archaeon clone oBS65f.93 16S ribosomal RNA gene, partial sequence Length = 790 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttgaaaaactttttcttggt 415 |||||||||||||||||||| Sbjct: 309 ttgaaaaactttttcttggt 328
>emb|AL731843.14| Mouse DNA sequence from clone RP23-300F6 on chromosome X, complete sequence Length = 226657 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tccaagtattttatattctt 184 |||||||||||||||||||| Sbjct: 2937 tccaagtattttatattctt 2918 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,100,391 Number of Sequences: 3902068 Number of extensions: 6100391 Number of successful extensions: 119001 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118713 Number of HSP's gapped (non-prelim): 281 length of query: 610 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 587 effective length of database: 17,143,297,704 effective search space: 10063115752248 effective search space used: 10063115752248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)