ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62l13 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 121 bits (304), Expect = 1e-27 Identities = 75/184 (40%), Positives = 106/184 (57%), Gaps = 1/184 (0%) Frame = +2 Query: 41 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 220 E++EFLR +LIGK+V+V ++Y R S +PA S + G Sbjct: 400 EAREFLRKKLIGKKVSVTVDYIRPASP--ATETVPAFSERTCATVTIGG----------- 446 Query: 221 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 397 IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 447 --------------INIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 492 Query: 398 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCSIA 577 HS K P+ + D++ +++KAK FLPFLQR R A+VEYVFSG R KL +PKETC I Sbjct: 493 HSKKEVPIHRVADISG-DTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLIT 551 Query: 578 FSLS 589 F L+ Sbjct: 552 FLLA 555 Score = 32.7 bits (73), Expect = 0.81 Identities = 31/127 (24%), Positives = 54/127 (42%) Frame = +2 Query: 26 ENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSP 205 E +A ++EFLR +LIGK+V +E T G+ +YG ++LG Sbjct: 75 EPWAFPAREFLRKKLIGKEVCFTIEN----KTPQGR--------------EYGMIYLGKD 116 Query: 206 SQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLAAHSRAEKA 385 + + N+AE L++ G A S+ + + L +A+ + Sbjct: 117 TNGE----------------NIAESLVAEGLA--SRREGMRANNPEQNRLSECEEQAKAS 158 Query: 386 KKGVHSD 406 KKG+ S+ Sbjct: 159 KKGMWSE 165
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 121 bits (304), Expect = 1e-27 Identities = 75/184 (40%), Positives = 106/184 (57%), Gaps = 1/184 (0%) Frame = +2 Query: 41 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 220 E++EFLR +LIGK+V V ++Y R S + +PA S + G Sbjct: 401 EAREFLRKKLIGKKVNVTVDYIRPASP--ATDTVPAFSERTCATVTIGG----------- 447 Query: 221 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 397 IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 448 --------------INIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 493 Query: 398 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCSIA 577 HS K P+ + D++ +++KAK FLPFLQR R A+VEYVFSG R KL +PKETC I Sbjct: 494 HSKKEVPIHRVADISG-DTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLIT 552 Query: 578 FSLS 589 F L+ Sbjct: 553 FLLA 556 Score = 32.0 bits (71), Expect = 1.4 Identities = 30/127 (23%), Positives = 54/127 (42%) Frame = +2 Query: 26 ENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSP 205 E +A ++EFLR +LIGK+V +E T G+ +YG ++LG Sbjct: 76 EPWAFPAREFLRKKLIGKEVCFTIEN----KTPQGR--------------EYGMIYLGKD 117 Query: 206 SQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLAAHSRAEKA 385 + + N+AE L++ G A ++ + + L +A+ + Sbjct: 118 TNGE----------------NIAESLVAEGLA--TRREGMRANNPEQNRLAECEEQAKAS 159 Query: 386 KKGVHSD 406 KKG+ S+ Sbjct: 160 KKGMWSE 166
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 121 bits (303), Expect = 2e-27 Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 1/184 (0%) Frame = +2 Query: 41 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 220 E++EFLR +LIGK+V V ++Y R S +PA S + G Sbjct: 401 EAREFLRKKLIGKKVNVTVDYIRPASP--ATETVPAFSERTCATVTIGG----------- 447 Query: 221 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 397 IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 448 --------------INIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 493 Query: 398 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCSIA 577 HS K P+ + D++ +++KAK FLPFLQR R A+VEYVFSG R KL +PKETC I Sbjct: 494 HSKKEVPIHRVADISG-DTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLIT 552 Query: 578 FSLS 589 F L+ Sbjct: 553 FLLA 556 Score = 31.6 bits (70), Expect = 1.8 Identities = 30/127 (23%), Positives = 54/127 (42%) Frame = +2 Query: 26 ENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSP 205 E +A ++EFLR +LIGK+V +E T G+ +YG ++LG Sbjct: 76 EPWAFPAREFLRKKLIGKEVCFTIEN----KTPQGR--------------EYGMIYLGKD 117 Query: 206 SQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLAAHSRAEKA 385 + + N+AE L++ G A ++ + + L +A+ + Sbjct: 118 TNGE----------------NIAESLVAEGLA--TRREGMRANNPEQNRLSECEEQAKAS 159 Query: 386 KKGVHSD 406 KKG+ S+ Sbjct: 160 KKGMWSE 166
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 121 bits (303), Expect = 2e-27 Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 1/184 (0%) Frame = +2 Query: 41 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 220 E++EFLR +LIGK+V V ++Y R S +PA S + G Sbjct: 401 EAREFLRKKLIGKKVNVTVDYIRPASP--ATETVPAFSERTCATVTIGG----------- 447 Query: 221 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 397 IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 448 --------------INIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 493 Query: 398 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCSIA 577 HS K P+ + D++ +++KAK FLPFLQR R A+VEYVFSG R KL +PKETC I Sbjct: 494 HSKKEVPIHRVADISG-DTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLIT 552 Query: 578 FSLS 589 F L+ Sbjct: 553 FLLA 556 Score = 32.7 bits (73), Expect = 0.81 Identities = 31/127 (24%), Positives = 54/127 (42%) Frame = +2 Query: 26 ENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSP 205 E +A ++EFLR +LIGK+V +E T G+ +YG ++LG Sbjct: 76 EPWAFPAREFLRKKLIGKEVCFTIEN----KTPQGR--------------EYGMIYLGKD 117 Query: 206 SQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLAAHSRAEKA 385 + + N+AE L++ G A ++ + + L +A+ A Sbjct: 118 TNGE----------------NIAESLVAEGLA--TRREGMRANNPEQNRLSECEEQAKAA 159 Query: 386 KKGVHSD 406 KKG+ S+ Sbjct: 160 KKGMWSE 166
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 117 bits (294), Expect = 2e-26 Identities = 76/184 (41%), Positives = 108/184 (58%), Gaps = 1/184 (0%) Frame = +2 Query: 41 ESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADG 220 E++EFLR +LIGK+V V ++Y R + NAM +G P+ + Sbjct: 403 EAREFLRKKLIGKKVNVTVDYIRAAT-----NAME----------------MGVPAFPE- 440 Query: 221 DDTSSVPSTGTQPKINVAELLLSRGFAAISKHR-DYEERSHYFDALLAAHSRAEKAKKGV 397 +T T IN+AE L+S+G A + ++R D ++RS ++D LLAA +RA K KG+ Sbjct: 441 ----RTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGL 496 Query: 398 HSDKLPPVMHITDLTMVNSKKAKDFLPFLQRNRRHTAIVEYVFSGHRFKLTIPKETCSIA 577 HS K P+ + D++ ++KAK F PFLQR R A+VEYVFSG R KL +PKETC I Sbjct: 497 HSKKEVPIHRVADISG-ETQKAKQFFPFLQRAGRSEAVVEYVFSGSRLKLYMPKETCLIT 555 Query: 578 FSLS 589 F L+ Sbjct: 556 FLLA 559 Score = 30.0 bits (66), Expect = 5.2 Identities = 29/127 (22%), Positives = 54/127 (42%) Frame = +2 Query: 26 ENFARESKEFLRTRLIGKQVTVEMEYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGSP 205 E +A +++EF+R ++IGK+V +E T G+ +YG V+LG Sbjct: 76 EPWAFQAREFMRKKVIGKEVCFTVEN----KTPQGR--------------EYGMVYLGKD 117 Query: 206 SQADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLAAHSRAEKA 385 + + N+AE L++ G A + + + L +A+ + Sbjct: 118 TSGE----------------NIAESLVAEGLAMV-RREGIRGNNPEQVRLCDLEDQAKSS 160 Query: 386 KKGVHSD 406 KKG+ S+ Sbjct: 161 KKGLWSE 167
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 113 ISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADGDDTSSVPSTGTQP 259 ++ M NA+ A SA R +GSV GS + D+TS++P +QP Sbjct: 1385 MNAMPSHNAVNARPSAPERRDSFGSVSSGSNVSSIEDETSTMPLKASQP 1433
>RR8_SPIOL (P09597) Chloroplast 30S ribosomal protein S8| Length = 133 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +2 Query: 212 ADGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDALLAAHSRAEK 382 AD + +V T N+ ++LL GF I R ++ER+ YF L H R +K Sbjct: 15 ADMNRKGTVRIVSTNITENIVKILLREGF--IENARKHQERNKYFLVLTLRHRRNKK 69
>ALGD_PSESH (O07299) GDP-mannose 6-dehydrogenase (EC 1.1.1.132) (GMD)| Length = 438 Score = 30.8 bits (68), Expect = 3.1 Identities = 35/143 (24%), Positives = 54/143 (37%) Frame = +2 Query: 110 RISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLS 289 R +T QNA V+S DTR + LG +A DD P + +AE+L+ Sbjct: 295 RSNTSQVQNAFDMVASYDTRKV----ALLGLSFKAGTDDLRE------SPLVELAEMLIG 344 Query: 290 RGFAAISKHRDYEERSHYFDALLAAHSRAEKAKKGVHSDKLPPVMHITDLTMVNSKKAKD 469 +GF FD+ + ++R A K K+P V + + D Sbjct: 345 KGFDL-----------SIFDSNV-EYARVHGANKDYIESKIPHVSSLLNSDFDQVINDSD 392 Query: 470 FLPFLQRNRRHTAIVEYVFSGHR 538 + R+ R A+ G R Sbjct: 393 VIILGNRDERFRALANKTPEGKR 415
>TENS1_HUMAN (Q9HBL0) Tensin-1| Length = 1735 Score = 29.6 bits (65), Expect = 6.8 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 17/119 (14%) Frame = +2 Query: 98 EYSRRISTMDGQNAMPAVSSADTRVLDYGSVFLGS-PSQADGDDTSSVPSTGTQPKINVA 274 E R T+ G P+ S + +L S +GS PS G+ + P T TQP + Sbjct: 1058 EIPLRNGTLGGSFVSPSPLSTSSPILSADSTSVGSFPS---GESSDQGPRTPTQPLLESG 1114 Query: 275 ELLLSRGFAAISKHRDYEERS----------------HYFDALLAAHSRAEKAKKGVHS 403 S G + S R+Y+ S +F + + +RA+ + GVH+ Sbjct: 1115 FRSGSLGQPSPSAQRNYQSSSPLPTVGSSYSSPDYSLQHFSSSPESQARAQFSVAGVHT 1173
>Y5204_STRCO (Q9FCI4) UPF0182 protein SCO5204| Length = 1000 Score = 29.6 bits (65), Expect = 6.8 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +2 Query: 215 DGDDTSSVPSTGTQPKINVAELLLSRGFAAISKHRDYEERSHYFDA---LLAAHSRAEKA 385 +GDDT+ P T T P + A + F A K + ++ + Y +A L A RAE A Sbjct: 892 EGDDTTEPPPTSTNPTVREALSDAQKAFDAGQKALEQKDLAAYAEAQKDLEEALQRAEDA 951 Query: 386 K 388 + Sbjct: 952 Q 952
>ALGD_PSESM (Q887P8) GDP-mannose 6-dehydrogenase (EC 1.1.1.132) (GMD)| Length = 438 Score = 29.6 bits (65), Expect = 6.8 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +2 Query: 110 RISTMDGQNAMPAVSSADTRVLDYGSVFLGSPSQADGDDTSSVPSTGTQPKINVAELLLS 289 R +T QNA V+S DTR + LG +A DD P + +AE+L+ Sbjct: 295 RSNTSQVQNAFDMVASYDTRKV----ALLGLSFKAGTDDLRE------SPLVELAEMLIG 344 Query: 290 RGF 298 +GF Sbjct: 345 KGF 347 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,295,313 Number of Sequences: 219361 Number of extensions: 1599284 Number of successful extensions: 4025 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3913 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4007 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
