Clone Name | bah62l13 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full insert mRNA sequence Length = 1394 Score = 676 bits (341), Expect = 0.0 Identities = 431/461 (93%) Strand = Plus / Plus Query: 128 ggacagaatgctatgcctgcagtgagctcggctgatactagagttttggattatggttca 187 |||||||||||| |||||| | ||| |||||||||||| ||||||||||||||||||||| Sbjct: 8 ggacagaatgctgtgcctgtaatgaactcggctgataccagagttttggattatggttca 67 Query: 188 gtttttctaggttcgccatcgcaggccgatggtgatgacacatcttctgttccgagcaca 247 |||||||||||||||||||| | ||| || || |||||||||||||||| ||| |||||| Sbjct: 68 gtttttctaggttcgccatcaccggcggacggagatgacacatcttctgctccaagcaca 127 Query: 248 ggcacccagcctaaaattaatgttgctgagcttttgctctcacggggctttgctgcgata 307 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct: 128 ggcacccagcctaaaattaatgttgctgagcttttgctctcacggggcttcgctgagata 187 Query: 308 tcaaaacaccgtgactatgaggaaagatcacattattttgatgctctattagcagcgcac 367 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct: 188 tcaaaacaccgtgactacgaggaaagatcacattattttgatgctctattagcggctcac 247 Query: 368 tcgcgtgctgagaaagcaaagaagggagttcactctgataaacttcctcctgtgatgcat 427 || |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| Sbjct: 248 tcacgtgctgagaaagcaaagaaaggaattcactctgacaaacttcctcctgtgatgcat 307 Query: 428 ataactgatttaacaatggttaattctaagaaggccaaagatttccttcccttcctacag 487 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 308 ataaccgatttaacaatggttaattctaagaaggccaaagatttccttcccttcctgcag 367 Query: 488 cggaatagaaggcatactgccattgttgaatatgttttcagtggtcatcgtttcaaacta 547 |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| Sbjct: 368 cggaatagaaggcatactgctgttgttgaatatgtgttcagcggtcatcgtttcaaactg 427 Query: 548 acaattccgaaggagacttgcagcatcgccttttcattgtc 588 |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 428 acaattccaaaggagacttgcagcatcgctttttcattgtc 468
>gb|AY104393.1| Zea mays PCO063492 mRNA sequence Length = 867 Score = 309 bits (156), Expect = 6e-81 Identities = 360/428 (84%) Strand = Plus / Plus Query: 158 gctgatactagagttttggattatggttcagtttttctaggttcgccatcgcaggccgat 217 |||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||| | ||| Sbjct: 244 gctgatacaagagtattagattatggttcagtttttctgggttcaccatcacagactgat 303 Query: 218 ggtgatgacacatcttctgttccgagcacaggcacccagcctaaaattaatgttgctgag 277 || ||||||| |||||||| ||||||| | | || ||||||| | ||||||||||||| Sbjct: 304 ggagatgacatatcttctgctccgagctctgccagccagcctggagttaatgttgctgaa 363 Query: 278 cttttgctctcacggggctttgctgcgatatcaaaacaccgtgactatgaggaaagatca 337 ||||| |||||||| ||||||||| | ||| |||||| | || ||||||||||| || Sbjct: 364 cttttactctcacgaggctttgctaaaacatctaaacacagggattatgaggaaaggtcg 423 Query: 338 cattattttgatgctctattagcagcgcactcgcgtgctgagaaagcaaagaagggagtt 397 || |||| |||||||||||||||||| | || || ||||||||||||||||| ||||| Sbjct: 424 cactattatgatgctctattagcagctgaatcacgggctgagaaagcaaagaaaggagtg 483 Query: 398 cactctgataaacttcctcctgtgatgcatataactgatttaacaatggttaattctaag 457 || ||| | ||| ||||||||||||||||||| |||||||||| || | | ||| Sbjct: 484 cattctcaaaaagaatctcctgtgatgcatataacagatttaacaactgtatctgcaaag 543 Query: 458 aaggccaaagatttccttcccttcctacagcggaatagaaggcatactgccattgttgaa 517 |||||||||||||||||||||||| | ||| |||| ||||||||| ||||| |||||||| Sbjct: 544 aaggccaaagatttccttcccttcttgcagaggaacagaaggcattctgccgttgttgaa 603 Query: 518 tatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgcagcatcgcc 577 |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| || ||| Sbjct: 604 tatgtttttagtggccatcggttcaaactaacaattcctaaggagacttgcagtattgcc 663 Query: 578 ttttcatt 585 || ||||| Sbjct: 664 ttctcatt 671 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Plus Query: 20 aagcctgaaaattttgctcgtgaatcgaaggaattcttgcgcacacggttgattggcaaa 79 |||||||| |||||||||||||| | ||||| |||||||||| ||||||||||||| Sbjct: 106 aagcctgaccattttgctcgtgaagctaaggagttcttgcgcatgaggttgattggcaag 165 Query: 80 caggtgaccgtggaaatggaatattctagaaggatcagcaccatggatggacaga 134 || ||| | || ||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 166 caagtggctgttgaaatggaatattctcgaaggatcagcaccgtggatggacaga 220
>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence Length = 1657 Score = 196 bits (99), Expect = 6e-47 Identities = 222/263 (84%) Strand = Plus / Plus Query: 323 tatgaggaaagatcacattattttgatgctctattagcagcgcactcgcgtgctgagaaa 382 ||||||||||| ||||| |||| ||||||| |||||||||| | || || ||||||||| Sbjct: 10 tatgaggaaaggtcacactattatgatgctttattagcagctgaatcacgcgctgagaaa 69 Query: 383 gcaaagaagggagttcactctgataaacttcctcctgtgatgcatataactgatttaaca 442 |||||||| || || || ||| | ||| ||||||||||||||||||| ||||||||| Sbjct: 70 gcaaagaaaggcgtgcattctcagaaagaatctcctgtgatgcatataacagatttaaca 129 Query: 443 atggttaattctaagaaggccaaagatttccttcccttcctacagcggaatagaaggcat 502 | || | | ||||||||||||||||| ||||||||| | |||||||| ||||||||| Sbjct: 130 actgtatctgcaaagaaggccaaagattttcttcccttcttgcagcggaacagaaggcat 189 Query: 503 actgccattgttgaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggag 562 | ||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||| Sbjct: 190 tcggccatcgttgaatatgtttttagtggccatcggttcaaactaacaattcccaaggag 249 Query: 563 acttgcagcatcgccttttcatt 585 ||||| || |||||||| ||||| Sbjct: 250 acttgtagtatcgccttctcatt 272
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3549 Score = 163 bits (82), Expect = 8e-37 Identities = 328/410 (80%) Strand = Plus / Plus Query: 170 gttttggattatggttcagtttttctaggttcgccatcgcaggccgatggtgatgacaca 229 |||||||||||||| || |||||||| ||||| || |||||||| ||||||||||| Sbjct: 1650 gttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtt 1709 Query: 230 tcttctgttccgagcacaggcacccagcctaaaattaatgttgctgagcttttgctctca 289 ||||| |||| ||| |||||| ||| ||| || ||| |||||||| | |||||||| Sbjct: 1710 tcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctca 1769 Query: 290 cggggctttgctgcgatatcaaaacaccgtgactatgaggaaagatcacattattttgat 349 ||||||||||| | ||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct: 1770 aggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgac 1829 Query: 350 gctctattagcagcgcactcgcgtgctgagaaagcaaagaagggagttcactctgataaa 409 || || || || | || || ||||||||||||||||| |||||||| |||| ||| Sbjct: 1830 ctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaa 1889 Query: 410 cttcctcctgtgatgcatataactgatttaacaatggttaattctaagaaggccaaagat 469 | ||||| ||||| ||||| || || |||| |||| | |||||||||| ||| Sbjct: 1890 gaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagac 1949 Query: 470 ttccttcccttcctacagcggaatagaaggcatactgccattgttgaatatgttttcagt 529 |||||||| ||| |||||||||| ||||| ||| | || |||||||||||||| |||||| Sbjct: 1950 ttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagt 2009 Query: 530 ggtcatcgtttcaaactaacaattccgaaggagacttgcagcatcgcctt 579 || || |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 2010 ggccaccgtttcaaactaacaattcctaaggagacttgcagcattgcctt 2059 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 20 aagcctgaaaattttgctcgtgaatcgaaggaattcttgcgcacacggttgattggcaaa 79 |||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct: 1509 aagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaag 1568 Query: 80 caggtgaccgtggaaatggaatattctagaaggatcagcaccatggatggacag 133 || ||||| || || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 1569 caagtgactgttgagatggaatactctagaaggatcagcactgtggatggacag 1622
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full insert sequence Length = 3547 Score = 163 bits (82), Expect = 8e-37 Identities = 328/410 (80%) Strand = Plus / Plus Query: 170 gttttggattatggttcagtttttctaggttcgccatcgcaggccgatggtgatgacaca 229 |||||||||||||| || |||||||| ||||| || |||||||| ||||||||||| Sbjct: 1648 gttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtt 1707 Query: 230 tcttctgttccgagcacaggcacccagcctaaaattaatgttgctgagcttttgctctca 289 ||||| |||| ||| |||||| ||| ||| || ||| |||||||| | |||||||| Sbjct: 1708 tcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctca 1767 Query: 290 cggggctttgctgcgatatcaaaacaccgtgactatgaggaaagatcacattattttgat 349 ||||||||||| | ||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct: 1768 aggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgac 1827 Query: 350 gctctattagcagcgcactcgcgtgctgagaaagcaaagaagggagttcactctgataaa 409 || || || || | || || ||||||||||||||||| |||||||| |||| ||| Sbjct: 1828 ctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaa 1887 Query: 410 cttcctcctgtgatgcatataactgatttaacaatggttaattctaagaaggccaaagat 469 | ||||| ||||| ||||| || || |||| |||| | |||||||||| ||| Sbjct: 1888 gaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagac 1947 Query: 470 ttccttcccttcctacagcggaatagaaggcatactgccattgttgaatatgttttcagt 529 |||||||| ||| |||||||||| ||||| ||| | || |||||||||||||| |||||| Sbjct: 1948 ttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagt 2007 Query: 530 ggtcatcgtttcaaactaacaattccgaaggagacttgcagcatcgcctt 579 || || |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 2008 ggccaccgtttcaaactaacaattcctaaggagacttgcagcattgcctt 2057 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 20 aagcctgaaaattttgctcgtgaatcgaaggaattcttgcgcacacggttgattggcaaa 79 |||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct: 1507 aagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaag 1566 Query: 80 caggtgaccgtggaaatggaatattctagaaggatcagcaccatggatggacag 133 || ||||| || || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 1567 caagtgactgttgagatggaatactctagaaggatcagcactgtggatggacag 1620
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 mRNA, complete cds Length = 2961 Score = 139 bits (70), Expect = 1e-29 Identities = 172/206 (83%) Strand = Plus / Plus Query: 374 gctgagaaagcaaagaagggagttcactctgataaacttcctcctgtgatgcatataact 433 ||||||||||||||||| |||||||| |||| ||| | ||||| ||||| ||||| Sbjct: 1633 gctgagaaagcaaagaaaggagttcattctgcaaaaaaatcacctgtcatgcacataaca 1692 Query: 434 gatttaacaatggttaattctaagaaggccaaagatttccttcccttcctacagcggaat 493 || || |||| |||| | |||||||||| ||| |||||||| ||| |||||||||| Sbjct: 1693 gacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaac 1752 Query: 494 agaaggcatactgccattgttgaatatgttttcagtggtcatcgtttcaaactaacaatt 553 ||||| ||| | || |||||||||||||| |||||||| || |||||||||||||||||| Sbjct: 1753 agaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaatt 1812 Query: 554 ccgaaggagacttgcagcatcgcctt 579 || ||||||||||||||||| ||||| Sbjct: 1813 cctaaggagacttgcagcattgcctt 1838 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 20 aagcctgaaaattttgctcgtgaatcgaaggaattcttgcgcacacggttgattggcaaa 79 |||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct: 1288 aagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaag 1347 Query: 80 caggtgaccgtggaaatggaatattctagaaggatcagcaccatggatggacag 133 || ||||| || || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 1348 caagtgactgttgagatggaatactctagaaggatcagcactgtggatggacag 1401 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 170 gttttggattatggttcagtttttctaggttcgccatcgcaggccgatggtgatga 225 |||||||||||||| || |||||||| ||||| || |||||||| ||||||||||| Sbjct: 1429 gttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatga 1484
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 gene, complete cds Length = 5478 Score = 137 bits (69), Expect = 5e-29 Identities = 111/125 (88%) Strand = Plus / Plus Query: 455 aagaaggccaaagatttccttcccttcctacagcggaatagaaggcatactgccattgtt 514 |||||||||| ||| |||||||| ||| |||||||||| ||||| ||| | || |||||| Sbjct: 2882 aagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgtt 2941 Query: 515 gaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgcagcatc 574 |||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct: 2942 gaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcatt 3001 Query: 575 gcctt 579 ||||| Sbjct: 3002 gcctt 3006 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 20 aagcctgaaaattttgctcgtgaatcgaaggaattcttgcgcacacggttgattggcaa 78 |||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct: 2281 aagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaa 2339 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 170 gttttggattatggttcagtttttctaggttcgccatcgcaggccgatggtgatga 225 |||||||||||||| || |||||||| ||||| || |||||||| ||||||||||| Sbjct: 2519 gttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatga 2574 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 80 caggtgaccgtggaaatggaatattctagaaggatcagcaccatggatggacag 133 |||||||| || || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 2438 caggtgactgttgagatggaatactctagaaggatcagcactgtggatggacag 2491 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 374 gctgagaaagcaaagaagggagttcactctg 404 ||||||||||||||||| |||||||| |||| Sbjct: 2723 gctgagaaagcaaagaaaggagttcattctg 2753
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 137 bits (69), Expect = 5e-29 Identities = 111/125 (88%) Strand = Plus / Minus Query: 455 aagaaggccaaagatttccttcccttcctacagcggaatagaaggcatactgccattgtt 514 |||||||||| ||| |||||||| ||| |||||||||| ||||| ||| | || |||||| Sbjct: 19121049 aagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgtt 19120990 Query: 515 gaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgcagcatc 574 |||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct: 19120989 gaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcatt 19120930 Query: 575 gcctt 579 ||||| Sbjct: 19120929 gcctt 19120925 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 20 aagcctgaaaattttgctcgtgaatcgaaggaattcttgcgcacacggttgattggcaa 78 |||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct: 19121650 aagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaa 19121592 Score = 69.9 bits (35), Expect = 9e-09 Identities = 185/235 (78%) Strand = Plus / Minus Query: 170 gttttggattatggttcagtttttctaggttcgccatcgcaggccgatggtgatgacaca 229 |||||||||||||| || |||||||| ||||| || |||||||| ||||||||||| Sbjct: 19121412 gttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtt 19121353 Query: 230 tcttctgttccgagcacaggcacccagcctaaaattaatgttgctgagcttttgctctca 289 ||||| |||| ||| |||||| ||| ||| || ||| |||||||| | |||||||| Sbjct: 19121352 tcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctca 19121293 Query: 290 cggggctttgctgcgatatcaaaacaccgtgactatgaggaaagatcacattattttgat 349 ||||||||||| | ||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct: 19121292 aggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgac 19121233 Query: 350 gctctattagcagcgcactcgcgtgctgagaaagcaaagaagggagttcactctg 404 || || || || | || || ||||||||||||||||| |||||||| |||| Sbjct: 19121232 ctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctg 19121178 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 80 caggtgaccgtggaaatggaatattctagaaggatcagcaccatggatggacag 133 |||||||| || || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 19121493 caggtgactgttgagatggaatactctagaaggatcagcactgtggatggacag 19121440
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 137 bits (69), Expect = 5e-29 Identities = 111/125 (88%) Strand = Plus / Minus Query: 455 aagaaggccaaagatttccttcccttcctacagcggaatagaaggcatactgccattgtt 514 |||||||||| ||| |||||||| ||| |||||||||| ||||| ||| | || |||||| Sbjct: 19298 aagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgtt 19239 Query: 515 gaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgcagcatc 574 |||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct: 19238 gaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcatt 19179 Query: 575 gcctt 579 ||||| Sbjct: 19178 gcctt 19174 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 20 aagcctgaaaattttgctcgtgaatcgaaggaattcttgcgcacacggttgattggcaa 78 |||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct: 19899 aagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaa 19841 Score = 69.9 bits (35), Expect = 9e-09 Identities = 185/235 (78%) Strand = Plus / Minus Query: 170 gttttggattatggttcagtttttctaggttcgccatcgcaggccgatggtgatgacaca 229 |||||||||||||| || |||||||| ||||| || |||||||| ||||||||||| Sbjct: 19661 gttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtt 19602 Query: 230 tcttctgttccgagcacaggcacccagcctaaaattaatgttgctgagcttttgctctca 289 ||||| |||| ||| |||||| ||| ||| || ||| |||||||| | |||||||| Sbjct: 19601 tcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctca 19542 Query: 290 cggggctttgctgcgatatcaaaacaccgtgactatgaggaaagatcacattattttgat 349 ||||||||||| | ||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct: 19541 aggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgac 19482 Query: 350 gctctattagcagcgcactcgcgtgctgagaaagcaaagaagggagttcactctg 404 || || || || | || || ||||||||||||||||| |||||||| |||| Sbjct: 19481 ctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctg 19427 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 80 caggtgaccgtggaaatggaatattctagaaggatcagcaccatggatggacag 133 |||||||| || || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 19742 caggtgactgttgagatggaatactctagaaggatcagcactgtggatggacag 19689
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 137 bits (69), Expect = 5e-29 Identities = 111/125 (88%) Strand = Plus / Minus Query: 455 aagaaggccaaagatttccttcccttcctacagcggaatagaaggcatactgccattgtt 514 |||||||||| ||| |||||||| ||| |||||||||| ||||| ||| | || |||||| Sbjct: 126570 aagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgtt 126511 Query: 515 gaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgcagcatc 574 |||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct: 126510 gaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcatt 126451 Query: 575 gcctt 579 ||||| Sbjct: 126450 gcctt 126446 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 20 aagcctgaaaattttgctcgtgaatcgaaggaattcttgcgcacacggttgattggcaa 78 |||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct: 127171 aagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaa 127113 Score = 69.9 bits (35), Expect = 9e-09 Identities = 185/235 (78%) Strand = Plus / Minus Query: 170 gttttggattatggttcagtttttctaggttcgccatcgcaggccgatggtgatgacaca 229 |||||||||||||| || |||||||| ||||| || |||||||| ||||||||||| Sbjct: 126933 gttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtt 126874 Query: 230 tcttctgttccgagcacaggcacccagcctaaaattaatgttgctgagcttttgctctca 289 ||||| |||| ||| |||||| ||| ||| || ||| |||||||| | |||||||| Sbjct: 126873 tcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctca 126814 Query: 290 cggggctttgctgcgatatcaaaacaccgtgactatgaggaaagatcacattattttgat 349 ||||||||||| | ||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct: 126813 aggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgac 126754 Query: 350 gctctattagcagcgcactcgcgtgctgagaaagcaaagaagggagttcactctg 404 || || || || | || || ||||||||||||||||| |||||||| |||| Sbjct: 126753 ctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctg 126699 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 80 caggtgaccgtggaaatggaatattctagaaggatcagcaccatggatggacag 133 |||||||| || || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 127014 caggtgactgttgagatggaatactctagaaggatcagcactgtggatggacag 126961
>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full insert sequence Length = 1551 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 509 attgttgaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgc 568 |||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||| Sbjct: 5 attgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgc 64 Query: 569 agcatcgcctt 579 ||||| ||||| Sbjct: 65 agcattgcctt 75
>gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence Length = 3381 Score = 44.1 bits (22), Expect = 0.51 Identities = 52/62 (83%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgcagc 571 ||||| ||||| ||||||||||| | |||||||| ||||| ||||||||||||||| Sbjct: 1932 gttgagtatgtcctcagtggtcatagattcaaactgttcattcccaaggagacttgcagc 1991 Query: 572 at 573 || Sbjct: 1992 at 1993
>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence Length = 117358 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 515 gaatatgttttcagtggtcatcgtttcaaa 544 |||||||| ||||||||||| ||||||||| Sbjct: 99831 gaatatgtcttcagtggtcaccgtttcaaa 99802 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 412 tcctcctgtgatgcatataactga 435 |||||| ||||||||||||||||| Sbjct: 100032 tcctccagtgatgcatataactga 100009
>emb|BX005103.4| Zebrafish DNA sequence from clone CH211-149O7 in linkage group 25, complete sequence Length = 150295 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 166 tagagttttggattatggttcagttt 191 |||||||||||||||| ||||||||| Sbjct: 89998 tagagttttggattattgttcagttt 89973
>emb|AL929136.5| Mouse DNA sequence from clone RP23-442B16 on chromosome 2, complete sequence Length = 112788 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 142 gcctgcagtgagctcggctgatacta 167 |||||||||||||| ||||||||||| Sbjct: 59580 gcctgcagtgagctgggctgatacta 59555
>ref|XM_472372.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3171 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 509 attgttgaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgc 568 |||||||| || |||||||| || |||||||||||| | || || || || ||||||||| Sbjct: 1786 attgttgagtacgttttcagcggccatcgtttcaaagtgacgatccctaaagagacttgc 1845 Query: 569 a 569 | Sbjct: 1846 a 1846
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Minus Query: 509 attgttgaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgc 568 |||||||| || |||||||| || |||||||||||| | || || || || ||||||||| Sbjct: 87737 attgttgagtacgttttcagcggccatcgtttcaaagtgacgatccctaaagagacttgc 87678 Query: 569 a 569 | Sbjct: 87677 a 87677
>gb|AC087455.7| Homo sapiens, clone RP11-143J24, complete sequence Length = 185644 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 gctctcacggggctttgctgc 303 ||||||||||||||||||||| Sbjct: 94879 gctctcacggggctttgctgc 94899
>gb|AC069382.9| Homo sapiens chromosome 15, clone RP11-360J18, complete sequence Length = 193681 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 gctctcacggggctttgctgc 303 ||||||||||||||||||||| Sbjct: 170401 gctctcacggggctttgctgc 170421
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.0 Identities = 51/61 (83%) Strand = Plus / Minus Query: 509 attgttgaatatgttttcagtggtcatcgtttcaaactaacaattccgaaggagacttgc 568 |||||||| || |||||||| || |||||||||||| | || || || || ||||||||| Sbjct: 19932929 attgttgagtacgttttcagcggccatcgtttcaaagtgacgatccctaaagagacttgc 19932870 Query: 569 a 569 | Sbjct: 19932869 a 19932869
>gb|AC090963.32| Mus musculus strain C57BL/6J chromosome 17 clone rp23-435j12, complete sequence Length = 218107 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 acagaatgctatgcctgcagt 150 ||||||||||||||||||||| Sbjct: 129842 acagaatgctatgcctgcagt 129822
>gb|AC090653.36| Mus musculus strain C57BL/6J chromosome 17 clone rp23-260k1, complete sequence Length = 191844 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 acagaatgctatgcctgcagt 150 ||||||||||||||||||||| Sbjct: 152800 acagaatgctatgcctgcagt 152820
>emb|BX005386.8| Zebrafish DNA sequence from clone DKEY-21M1 in linkage group 1, complete sequence Length = 170040 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 tatgaggaaagatcacattat 343 ||||||||||||||||||||| Sbjct: 35229 tatgaggaaagatcacattat 35209
>emb|BX284682.7| Zebrafish DNA sequence from clone DKEYP-74C5 in linkage group 22, complete sequence Length = 206289 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 gacacaagcctgaaaattttg 35 ||||||||||||||||||||| Sbjct: 168678 gacacaagcctgaaaattttg 168698
>dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094a, complete sequence Length = 65557 Score = 42.1 bits (21), Expect = 2.0 Identities = 72/89 (80%) Strand = Plus / Minus Query: 455 aagaaggccaaagatttccttcccttcctacagcggaatagaaggcatactgccattgtt 514 ||||| |||||||| ||| | || |||||||| || | ||||||| | |||| |||| Sbjct: 50942 aagaaagccaaagacttcttgcctttcctacatcgaagtagaagggttcctgctgttgtg 50883 Query: 515 gaatatgttttcagtggtcatcgtttcaa 543 |||||||| ||||||| ||||||||||| Sbjct: 50882 gaatatgtcctcagtggccatcgtttcaa 50854 Score = 42.1 bits (21), Expect = 2.0 Identities = 72/89 (80%) Strand = Plus / Minus Query: 455 aagaaggccaaagatttccttcccttcctacagcggaatagaaggcatactgccattgtt 514 ||||| |||||||| ||| | || |||||||| || | ||||||| | |||| |||| Sbjct: 34927 aagaaagccaaagacttcttgcctttcctacatcgaagtagaaggattcctgctgttgtg 34868 Query: 515 gaatatgttttcagtggtcatcgtttcaa 543 |||||||| ||||||| ||||||||||| Sbjct: 34867 gaatatgtcctcagtggccatcgtttcaa 34839 Score = 42.1 bits (21), Expect = 2.0 Identities = 72/89 (80%) Strand = Plus / Minus Query: 455 aagaaggccaaagatttccttcccttcctacagcggaatagaaggcatactgccattgtt 514 ||||| |||||||| ||| | || |||||||| || | ||||||| | |||| |||| Sbjct: 22017 aagaaagccaaagacttcttgcctttcctacaacgaagtagaagggttcctgctgttgtg 21958 Query: 515 gaatatgttttcagtggtcatcgtttcaa 543 |||||||| ||||||| ||||||||||| Sbjct: 21957 gaatatgtcctcagtggccatcgtttcaa 21929 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 412 tcctcctgtgatgcatataactga 435 |||||| ||||||||||||||||| Sbjct: 51077 tcctccagtgatgcatataactga 51054 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 412 tcctcctgtgatgcatataactga 435 |||||| ||||||||||||||||| Sbjct: 35062 tcctccagtgatgcatataactga 35039 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 412 tcctcctgtgatgcatataactga 435 |||||| ||||||||||||||||| Sbjct: 22152 tcctccagtgatgcatataactga 22129
>ref|NM_111707.2| Arabidopsis thaliana ATPK1; kinase AT3G08730 (ATPK1) mRNA, complete cds Length = 1835 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgaggaaagatcacattat 343 |||||||||||||||||||| Sbjct: 796 atgaggaaagatcacattat 815
>gb|AC008317.7| Drosophila melanogaster clone BACR08N17, complete sequence Length = 169100 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 10831 gttgaatatgttttcagtgg 10850
>gb|AC008356.6| Drosophila melanogaster clone BACR43K14, complete sequence Length = 162593 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 82856 gttgaatatgttttcagtgg 82875
>gb|AC079405.4| Homo sapiens BAC clone RP11-1150H5 from 7, complete sequence Length = 58815 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gtgctgagaaagcaaagaag 391 |||||||||||||||||||| Sbjct: 17476 gtgctgagaaagcaaagaag 17495
>gb|AC116138.21| Mus musculus chromosome 10, clone RP23-123D17, complete sequence Length = 219004 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 aaatggaatattctagaaggatca 116 |||||||| ||||||||||||||| Sbjct: 11839 aaatggaaaattctagaaggatca 11816
>gb|AC145983.2| Pan troglodytes BAC clone RP43-17E6 from 7, complete sequence Length = 167523 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gtgctgagaaagcaaagaag 391 |||||||||||||||||||| Sbjct: 90222 gtgctgagaaagcaaagaag 90203
>gb|L29030.1|ATHATPSAAA Arabidopsis thaliana protein-serine kinase mRNA, complete cds Length = 1747 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgaggaaagatcacattat 343 |||||||||||||||||||| Sbjct: 749 atgaggaaagatcacattat 768
>emb|CR769786.9| Zebrafish DNA sequence from clone DKEY-256I5 in linkage group 3, complete sequence Length = 91701 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 atcacattattttgatgctctatt 357 ||||||||||||||||| |||||| Sbjct: 75796 atcacattattttgatgatctatt 75773
>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel pseudogene, complete sequence Length = 204235 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 agttcactctgataaacttc 413 |||||||||||||||||||| Sbjct: 180617 agttcactctgataaacttc 180598
>emb|AL513523.33| Human DNA sequence from clone RP11-216N14 on chromosome 1 Contains a survival of motor neuron protein interacting protein 1 pseudogene (SIP1), a novel gene (FLJ21919), two novel genes, a novel gene, the SLC27A3 gene for solute carrier family 27 (fatty acid transporter), member 3, a pseudogene similar to part of putative neuronal cell adhesion molecule (PUNC), the 3' end of the gene for transcription repressor p66 beta component of the MeCP1 complex (P66beta), a adipose differentiation-related protein (ADFP) pseudogene and a CpG island, complete sequence Length = 150166 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cccagcctaaaattaatgtt 271 |||||||||||||||||||| Sbjct: 36186 cccagcctaaaattaatgtt 36205
>gb|BT009970.1| Drosophila melanogaster RE63138 full insert cDNA Length = 5869 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 2258 gttgaatatgttttcagtgg 2277
>emb|AL354830.8| Human DNA sequence from clone RP11-193G17 on chromosome 13 Contains the gene for a novel protein similar to prothymosin, complete sequence Length = 152555 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tgaggaaagatcacattatt 344 |||||||||||||||||||| Sbjct: 128913 tgaggaaagatcacattatt 128932
>emb|AL135934.19| Human DNA sequence from clone RP5-945I17 on chromosome 11p12-13, complete sequence Length = 93708 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 atttaacaatggttaattct 454 |||||||||||||||||||| Sbjct: 87717 atttaacaatggttaattct 87736
>emb|CR788312.9| Zebrafish DNA sequence from clone DKEY-192D9, complete sequence Length = 177966 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 426 atataactgatttaacaatggtta 449 ||||||||||| |||||||||||| Sbjct: 123967 atataactgatgtaacaatggtta 123990
>gb|AY096555.1| Arabidopsis thaliana putative ribosomal protein S6 kinase (ATPK6) (At3g08730) mRNA, complete cds Length = 1429 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgaggaaagatcacattat 343 |||||||||||||||||||| Sbjct: 493 atgaggaaagatcacattat 512
>gb|AY065230.1| Arabidopsis thaliana putative ribosomal-protein S6 kinase ATPK6 (At3g08730) mRNA, complete cds Length = 1781 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgaggaaagatcacattat 343 |||||||||||||||||||| Sbjct: 747 atgaggaaagatcacattat 766
>emb|X62589.1|DMPUMI D.melanogaster mRNA for pumilio protein Length = 6120 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 1711 gttgaatatgttttcagtgg 1730
>gb|AC015743.9| Homo sapiens chromosome 8, clone RP11-1G11, complete sequence Length = 193989 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gaggacacaagcctgaaaat 31 |||||||||||||||||||| Sbjct: 171086 gaggacacaagcctgaaaat 171067
>ref|NM_169260.1| Drosophila melanogaster pumilio CG9755-RB, transcript variant B (pum), mRNA Length = 4928 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 521 gttgaatatgttttcagtgg 540
>ref|NM_169259.1| Drosophila melanogaster pumilio CG9755-RD, transcript variant D (pum), mRNA Length = 6643 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 2236 gttgaatatgttttcagtgg 2255
>ref|NM_169258.1| Drosophila melanogaster pumilio CG9755-RA, transcript variant A (pum), mRNA Length = 6665 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 2258 gttgaatatgttttcagtgg 2277
>gb|AC158604.5| Mus musculus 10 BAC RP23-130B2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190024 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 aaatggaatattctagaaggatca 116 |||||||| ||||||||||||||| Sbjct: 2831 aaatggaaaattctagaaggatca 2854
>gb|L07943.1|DROPUM Drosophila melanogaster pumilio protein (pum) mRNA, complete cds Length = 6833 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 2430 gttgaatatgttttcagtgg 2449
>ref|NM_079561.2| Drosophila melanogaster pumilio CG9755-RC, transcript variant C (pum), mRNA Length = 6809 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 2402 gttgaatatgttttcagtgg 2421
>gb|AC006122.24| Homo sapiens 12 BAC RP11-264F23 (Roswell Park Cancer Institute Human Bac Library) complete sequence Length = 127957 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ggaaatggaatattctagaa 110 |||||||||||||||||||| Sbjct: 122471 ggaaatggaatattctagaa 122452
>emb|BX823948.1|CNS0A6IK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS9ZE08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1729 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgaggaaagatcacattat 343 |||||||||||||||||||| Sbjct: 722 atgaggaaagatcacattat 741
>gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17O14 genomic sequence, complete sequence Length = 90721 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 atgaggaaagatcacattat 343 |||||||||||||||||||| Sbjct: 63794 atgaggaaagatcacattat 63775
>gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complete sequence Length = 163117 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 aaagatcacattattttgat 349 |||||||||||||||||||| Sbjct: 25822 aaagatcacattattttgat 25841
>gb|AC091212.17| Homo sapiens 3 BAC CTD-2021J15 (CalTech Clone Library D) complete sequence Length = 79000 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 tggtcatcgtttcaaactaa 548 |||||||||||||||||||| Sbjct: 22185 tggtcatcgtttcaaactaa 22204
>gb|AY084935.1| Arabidopsis thaliana clone 122224 mRNA, complete sequence Length = 1808 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgaggaaagatcacattat 343 |||||||||||||||||||| Sbjct: 796 atgaggaaagatcacattat 815
>gb|AC145418.5| Dasypus novemcinctus clone VMRC5-458M22, complete sequence Length = 117130 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 ctaaaattaatgttgctgagcttt 281 |||| ||||||||||||||||||| Sbjct: 84117 ctaatattaatgttgctgagcttt 84140
>dbj|D42056.1|ATHATPK6A Arabidopsis thaliana ATPK6 mRNA for ribosomal-protein S6 kinase homolog, complete cds Length = 1786 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 atgaggaaagatcacattat 343 |||||||||||||||||||| Sbjct: 726 atgaggaaagatcacattat 745
>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein, complete cds Length = 3379 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 tcctcctgtgatgcatataactga 435 |||||| ||||||||||||||||| Sbjct: 1871 tcctccagtgatgcatataactga 1894
>dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein, partial cds Length = 2343 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 tcctcctgtgatgcatataactga 435 |||||| ||||||||||||||||| Sbjct: 807 tcctccagtgatgcatataactga 830
>gb|BT021317.1| Drosophila melanogaster RE10602 full insert cDNA Length = 6820 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 2402 gttgaatatgttttcagtgg 2421
>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the complete sequence Length = 306650 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 gttgaatatgttttcagtgg 531 |||||||||||||||||||| Sbjct: 287041 gttgaatatgttttcagtgg 287022
>gb|AC131795.3| Mus musculus BAC clone RP24-490N11 from 10, complete sequence Length = 181961 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tgttgaatatgttttcagtg 530 |||||||||||||||||||| Sbjct: 11459 tgttgaatatgttttcagtg 11440
>gb|AC117209.3| Mus musculus BAC clone RP23-281E24 from 10, complete sequence Length = 195911 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tgttgaatatgttttcagtg 530 |||||||||||||||||||| Sbjct: 175513 tgttgaatatgttttcagtg 175494
>gb|AC015564.13| Homo sapiens chromosome 8, clone RP11-351D9, complete sequence Length = 193425 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gaggacacaagcctgaaaat 31 |||||||||||||||||||| Sbjct: 56228 gaggacacaagcctgaaaat 56209 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,135,832 Number of Sequences: 3902068 Number of extensions: 6135832 Number of successful extensions: 120187 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 119970 Number of HSP's gapped (non-prelim): 216 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)