>HOPD2_PSESM (Q79LY0) Effector protein hopPtoD2 (EC 3.1.3.48) (Tyrosine-protein|
           phosphatase hopPtoD2)
          Length = 468

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 282 YARVPITDGKAPKSSDFDMVAFNVAAACKDA--ALVFNCQMGRGRTTTGTVIACLLRLRI 455
           Y RV ITD   P     D +  ++   C  A  +LV +C  GRGRTTT  ++  +L+   
Sbjct: 341 YRRVAITDHNRPSPEATDELV-DIMRHCLQANESLVVHCNGGRGRTTTAMIMVDMLKNAR 399

Query: 456 NH 461
           NH
Sbjct: 400 NH 401

>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 636

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
 Frame = -2

Query: 268 PSESKH----LYTSSGVRTASLLTFSHASKISP------LSVS*ITI-IAPSYRSASRKI 122
           PS S++     Y+SS   T    T S +SK+SP      +S+S I++  + S  S+S K+
Sbjct: 252 PSSSRNTSTSFYSSSLSSTNDFSTISKSSKLSPSASSSTVSISTISVPTSSSVSSSSSKV 311

Query: 121 SSFNRASIRSTLSRPIPVYSSIFLYGLSTSRSTKGFP 11
            S NR S  S+       YSS + +    S ++   P
Sbjct: 312 PS-NRPSSSSSSDDTTSAYSSTYTFQSLQSTTSSSIP 347

>CB032_RAT (Q5M7A7) Protein C2orf32 homolog|
          Length = 164

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 204 ENVNNEAVLTPLEVYKCLDSEGLPIKYARVPITDGKAPKSS 326
           EN++   VL PLE+ KC + +G  + Y  +  T+G AP  S
Sbjct: 60  ENISIGGVLVPLEL-KCKEPDGERVVYTGIYDTEGVAPTKS 99

>Y1980_VIBPA (Q87N95) UPF0313 protein VP1980|
          Length = 777

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
 Frame = +3

Query: 6   YMGKPFVLREVERPYKNMLEYTGIGRDRVERMEA-RLKEDILREAERYDGAIMVIHETDN 182
           Y   P VL  +E   + +  Y     D+V R      K DIL         + V H   N
Sbjct: 147 YKEVPIVLGGIEASLRRVAHYD-YWSDKVRRSVLFDAKADILLFGNAERALVEVAHRIAN 205

Query: 183 GEIFDAWENVNNEAVLTPL--EVYKCLDSEGL--PIKYARVP 296
           GE      N+   AV  P   E Y  +DS  +  P K A VP
Sbjct: 206 GEDISTMTNIRGTAVNLPAAPEGYTVIDSSRIEKPRKEAFVP 247

>RT32_MOUSE (Q9CPV3) Mitochondrial 28S ribosomal protein S32 (S32mt) (MRP-S32)|
          Length = 142

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 384 FNCQMGRGRTTTGTVIACL---LRLRINHGRPIGMPAIQNNHEDT 509
           +NCQ+    T  G  I C    + +   H +PI  P + +N+E+T
Sbjct: 42  YNCQVDLALTADGRTIVCYHPSVDIPYEHTKPIPQPDLLHNNEET 86

>HIM1_SCHPO (O59836) Hsk1-interacting molecule 1 (DNA repair protein rad35)|
          Length = 545

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
 Frame = +3

Query: 84  DRVERMEARLKEDILREAERYDGAIMVIHETDNGEIFDAWENVNNEAVLTPLEVYKCLDS 263
           D V + +    E+   EA+R +      +  D GE+   +E VNNE ++T    ++ + +
Sbjct: 21  DAVSKQKEYRIEEKTNEAQREEIITWKDNREDEGEVKTDFEVVNNENIITTTPKHQTVIT 80

Query: 264 EGLPIKYAR--------------VPITDGKAPKSSDFDMVAFNVAA 359
              P  Y +              +P+  G AP ++D +  A ++AA
Sbjct: 81  ---PKSYRKSVKRIKHDAPQNEDIPVMKGLAPINADTESKAESMAA 123

>AROK_METTH (O26896) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 289

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 156 IMVIHETDNGEIFDAWENVNNEAVLTPLE 242
           + + HE    +I DAWEN+  + ++T ++
Sbjct: 253 VALTHEDSEADIIDAWENLEGDVLVTSVD 281

>ATG3_YARLI (Q6C4Q9) Autophagy-related protein 3 (Autophagy-related E2-like|
           conjugation enzyme ATG3)
          Length = 366

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 63  EYTGIGRDRVERMEARLKEDILREAERYDGAIMVIHETDNGEIFDAWENVNNEAV 227
           ++  + R  +ER+EA+  +DI R   +     + + + D+GE  + WE V N A+
Sbjct: 288 KHANVMRVLMERVEAKGDKDITRGVAK-----LGVADADDGEGEEEWEEVENSAM 337


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,008,449
Number of Sequences: 219361
Number of extensions: 1615237
Number of successful extensions: 5015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5014
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)