ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 428 e-117
2gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 285 8e-74
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 285 8e-74
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 285 8e-74
5ref|NM_116066.2| Arabidopsis thaliana unknown protein AT3G62010 ... 64 5e-07
6gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19,... 62 2e-06
7gb|AC137831.27| Medicago truncatula clone mth2-34o21, complete s... 46 0.12
8emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, B... 46 0.12
9gb|AC149038.2| Medicago truncatula chromosome 7 BAC clone mth2-2... 46 0.12
10gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome... 44 0.48
11gb|AC159376.12| Mus musculus 10 BAC RP23-114N21 (Roswell Park Ca... 44 0.48
12gb|AC111044.9| Mus musculus chromosome 10, clone RP23-299H4, com... 44 0.48
13emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chr... 44 0.48
14emb|AL845479.8| Mouse DNA sequence from clone RP23-232N20 on chr... 44 0.48
15emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chro... 42 1.9
16emb|AL354952.12| Human DNA sequence from clone RP11-536I1 on chr... 42 1.9
17gb|BC038730.1| Homo sapiens cDNA clone IMAGE:5267572 42 1.9
18gb|AC116640.4| Homo sapiens BAC clone RP11-579B8 from 4, complet... 42 1.9
19gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, com... 42 1.9
20gb|AC092538.5| Homo sapiens BAC clone RP11-101J2 from 4, complet... 42 1.9
21gb|AC005144.1|AC005144 Homo sapiens chromosome 17, clone hRPK.46... 42 1.9
22emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chr... 42 1.9
23gb|AC139375.3| Mus musculus chromosome 3, clone RP24-217F16, com... 40 7.5
24gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 40 7.5
25gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18... 40 7.5
26gb|AC154385.2| Mus musculus BAC clone RP23-23O22 from chromosome... 40 7.5
27gb|AC164646.3| Mus musculus BAC clone RP24-262I1 from chromosome... 40 7.5
28gb|AC147119.2| Pan troglodytes BAC clone CH251-518N19 from Y, co... 40 7.5
29gb|AC147246.3| Mus musculus BAC clone RP23-465M17 from chromosom... 40 7.5
30gb|AC134243.3| Mus musculus BAC clone RP24-90E15 from chromosome... 40 7.5
31gb|AC135640.5| Mus musculus BAC clone RP23-362A12 from chromosom... 40 7.5
32gb|U61952.1| Caenorhabditis elegans cosmid F42A9, complete sequence 40 7.5
33emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4,... 40 7.5
34gb|AC105902.2| Homo sapiens chromosome 3 clone RP11-578F5, compl... 40 7.5
35gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.5
36gb|AC010170.3| Homo sapiens 3p22-21.3 BAC RPCI11-487J21 (Roswell... 40 7.5
37gb|AC174482.4| Pan troglodytes BAC clone CH251-527O19 from chrom... 40 7.5
38gb|AC160938.2| Pan troglodytes BAC clone CH251-901A9 from chromo... 40 7.5
39gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, comple... 40 7.5
40gb|AC159295.2| Mus musculus BAC clone RP23-273L18 from chromosom... 40 7.5
41dbj|AK029130.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 7.5
42dbj|AK029110.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 7.5
43ref|NM_069070.1| Caenorhabditis elegans CYtochrome P450 family m... 40 7.5
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
45gb|AC015978.4|AC015978 Homo sapiens BAC clone RP11-529I21 from Y... 40 7.5
46gb|AC007241.3|AC007241 Homo sapiens BAC clone RP11-157F24 from Y... 40 7.5
47ref|NM_175497.2| Mus musculus RIKEN cDNA 4732495G21 gene (473249... 40 7.5
48gb|AC146246.4| Pan troglodytes BAC clone clone CH251-154C4 from ... 40 7.5
49emb|AJ276021.1|PAL276021 Prevotella albensis gene for exo-1,4-be... 40 7.5
50ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5... 40 7.5
51gb|AC161006.2| Pan troglodytes BAC clone CH251-842O13 from chrom... 40 7.5
52emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.5
53dbj|AP002961.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.5
54gb|AC101944.16| Mus musculus chromosome 1, clone RP24-118B6, com... 40 7.5
55emb|AL136158.25| Mouse DNA sequence from clone RP21-538M10 on ch... 40 7.5 
>dbj|AK067968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121G22, full
            insert sequence
          Length = 4320

 Score =  428 bits (216), Expect = e-117
 Identities = 402/464 (86%)
 Strand = Plus / Plus

                                                                        
Query: 21   tttgtgctacgagaagtggaaagaccgtacaagaatatgcttgagtacacggggatcggt 80
            ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||| || | |
Sbjct: 1754 tttgtactacgtgaagtggaaagaccatacaagaatatgctggagtacacgggaattgat 1813

                                                                        
Query: 81   cgtgatagagttgagcgtatggaagctcggttgaaggaggatattttacgggaagcagaa 140
            |||||||| || || || ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 1814 cgtgatagggtggaacgaatggaagctcgtttgaaggaggatattttacgggaagcggaa 1873

                                                                        
Query: 141  cggtatgatggtgcaataatggttattcatgaaactgacaatggtgagatctttgatgca 200
            || |||  ||| || ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1874 cgctatagtggggccataatggttattcatgaaactgacaatggcgagatatttgatgca 1933

                                                                        
Query: 201  tgggaaaatgtcaataatgaagctgttctgactccactggaggtatacaaatgtttggac 260
            ||||||||||| |||||||||||||| ||||||||| ||||||| ||||||  | |||| 
Sbjct: 1934 tgggaaaatgtaaataatgaagctgtcctgactccattggaggtgtacaaacttctggag 1993

                                                                        
Query: 261  tctgaaggccttccaatcaaatatgcacgagtgcccattactgacggtaaggcccccaaa 320
            |||||||| ||||||||||| ||||| |||||||| || ||||| || || |||||||||
Sbjct: 1994 tctgaaggtcttccaatcaagtatgctcgagtgccaatcactgatggcaaagcccccaaa 2053

                                                                        
Query: 321  agttcagattttgatatggtagcttttaatgtcgcagctgcttgcaaggatgctgctctt 380
            |||||||||||||| |   || | || ||||| |||||||||  ||||||| ||||  ||
Sbjct: 2054 agttcagattttgacacaataaccttaaatgtggcagctgctcacaaggatactgcattt 2113

                                                                        
Query: 381  gtattcaattgccagatgggcaggggcagaacaactactggtactgtgattgcttgcctg 440
            || || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct: 2114 gtttttaattgccagatgggcaggggaagaacaactacaggtactgtgattgcttgtctg 2173

                                                        
Query: 441  ctcagacttcgaatcaatcacggcagacctattggaatgccagc 484
            || ||| | |||||  |||| |||||||||||| || |||||||
Sbjct: 2174 ctgagattgcgaattgatcatggcagacctattagattgccagc 2217
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score =  285 bits (144), Expect = 8e-74
 Identities = 273/316 (86%)
 Strand = Plus / Minus

                                                                          
Query: 80     tcgtgatagagttgagcgtatggaagctcggttgaaggaggatattttacgggaagcaga 139
              ||||||||| || || || ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 154105 tcgtgatagggtggaacgaatggaagctcgtttgaaggaggatattttacgggaagcgga 154046

                                                                          
Query: 140    acggtatgatggtgcaataatggttattcatgaaactgacaatggtgagatctttgatgc 199
              ||| |||  ||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 154045 acgctatagtggggccataatggttattcatgaaactgacaatggtgagatatttgatgc 153986

                                                                          
Query: 200    atgggaaaatgtcaataatgaagctgttctgactccactggaggtatacaaatgtttgga 259
              |||||||||||| |||||||||||||| ||||||||| ||||||| ||||||  | ||||
Sbjct: 153985 atgggaaaatgtaaataatgaagctgtcctgactccattggaggtgtacaaacttctgga 153926

                                                                          
Query: 260    ctctgaaggccttccaatcaaatatgcacgagtgcccattactgacggtaaggcccccaa 319
               |||||||| ||||||||||| ||||| |||||||| || ||||| || || ||||||||
Sbjct: 153925 gtctgaaggtcttccaatcaagtatgctcgagtgccaatcactgatggcaaagcccccaa 153866

                                                                          
Query: 320    aagttcagattttgatatggtagcttttaatgtcgcagctgcttgcaaggatgctgctct 379
              ||||||||||||||| |   || | || ||||| |||||||||  ||||||| ||||  |
Sbjct: 153865 aagttcagattttgacacaataaccttaaatgtggcagctgctcacaaggatactgcatt 153806

                              
Query: 380    tgtattcaattgccag 395
              ||| || |||||||||
Sbjct: 153805 tgtttttaattgccag 153790



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                          
Query: 394    agatgggcaggggcagaacaactactggtactgtgattgcttgcctgctcagacttcgaa 453
              ||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | ||||
Sbjct: 153687 agatgggcaggggaagaacaactacaggtactgtgattgcttgtctgctgagattgcgaa 153628

                                             
Query: 454    tcaatcacggcagacctattggaatgccagc 484
              |  |||| |||||||||||| || |||||||
Sbjct: 153627 ttgatcatggcagacctattagattgccagc 153597



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 21     tttgtgctacgagaagtggaaagaccgtacaagaatatgcttgagtacacgg 72
              ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 154596 tttgtactacgtgaagtggaaagaccatacaagaatatgctggagtacacgg 154545
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  285 bits (144), Expect = 8e-74
 Identities = 273/316 (86%)
 Strand = Plus / Minus

                                                                            
Query: 80       tcgtgatagagttgagcgtatggaagctcggttgaaggaggatattttacgggaagcaga 139
                ||||||||| || || || ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 21461194 tcgtgatagggtggaacgaatggaagctcgtttgaaggaggatattttacgggaagcgga 21461135

                                                                            
Query: 140      acggtatgatggtgcaataatggttattcatgaaactgacaatggtgagatctttgatgc 199
                ||| |||  ||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 21461134 acgctatagtggggccataatggttattcatgaaactgacaatggtgagatatttgatgc 21461075

                                                                            
Query: 200      atgggaaaatgtcaataatgaagctgttctgactccactggaggtatacaaatgtttgga 259
                |||||||||||| |||||||||||||| ||||||||| ||||||| ||||||  | ||||
Sbjct: 21461074 atgggaaaatgtaaataatgaagctgtcctgactccattggaggtgtacaaacttctgga 21461015

                                                                            
Query: 260      ctctgaaggccttccaatcaaatatgcacgagtgcccattactgacggtaaggcccccaa 319
                 |||||||| ||||||||||| ||||| |||||||| || ||||| || || ||||||||
Sbjct: 21461014 gtctgaaggtcttccaatcaagtatgctcgagtgccaatcactgatggcaaagcccccaa 21460955

                                                                            
Query: 320      aagttcagattttgatatggtagcttttaatgtcgcagctgcttgcaaggatgctgctct 379
                ||||||||||||||| |   || | || ||||| |||||||||  ||||||| ||||  |
Sbjct: 21460954 aagttcagattttgacacaataaccttaaatgtggcagctgctcacaaggatactgcatt 21460895

                                
Query: 380      tgtattcaattgccag 395
                ||| || |||||||||
Sbjct: 21460894 tgtttttaattgccag 21460879



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                            
Query: 394      agatgggcaggggcagaacaactactggtactgtgattgcttgcctgctcagacttcgaa 453
                ||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | ||||
Sbjct: 21460776 agatgggcaggggaagaacaactacaggtactgtgattgcttgtctgctgagattgcgaa 21460717

                                               
Query: 454      tcaatcacggcagacctattggaatgccagc 484
                |  |||| |||||||||||| || |||||||
Sbjct: 21460716 ttgatcatggcagacctattagattgccagc 21460686



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 21       tttgtgctacgagaagtggaaagaccgtacaagaatatgcttgagtacacgg 72
                ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 21461685 tttgtactacgtgaagtggaaagaccatacaagaatatgctggagtacacgg 21461634
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  285 bits (144), Expect = 8e-74
 Identities = 273/316 (86%)
 Strand = Plus / Minus

                                                                            
Query: 80       tcgtgatagagttgagcgtatggaagctcggttgaaggaggatattttacgggaagcaga 139
                ||||||||| || || || ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 21454223 tcgtgatagggtggaacgaatggaagctcgtttgaaggaggatattttacgggaagcgga 21454164

                                                                            
Query: 140      acggtatgatggtgcaataatggttattcatgaaactgacaatggtgagatctttgatgc 199
                ||| |||  ||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 21454163 acgctatagtggggccataatggttattcatgaaactgacaatggtgagatatttgatgc 21454104

                                                                            
Query: 200      atgggaaaatgtcaataatgaagctgttctgactccactggaggtatacaaatgtttgga 259
                |||||||||||| |||||||||||||| ||||||||| ||||||| ||||||  | ||||
Sbjct: 21454103 atgggaaaatgtaaataatgaagctgtcctgactccattggaggtgtacaaacttctgga 21454044

                                                                            
Query: 260      ctctgaaggccttccaatcaaatatgcacgagtgcccattactgacggtaaggcccccaa 319
                 |||||||| ||||||||||| ||||| |||||||| || ||||| || || ||||||||
Sbjct: 21454043 gtctgaaggtcttccaatcaagtatgctcgagtgccaatcactgatggcaaagcccccaa 21453984

                                                                            
Query: 320      aagttcagattttgatatggtagcttttaatgtcgcagctgcttgcaaggatgctgctct 379
                ||||||||||||||| |   || | || ||||| |||||||||  ||||||| ||||  |
Sbjct: 21453983 aagttcagattttgacacaataaccttaaatgtggcagctgctcacaaggatactgcatt 21453924

                                
Query: 380      tgtattcaattgccag 395
                ||| || |||||||||
Sbjct: 21453923 tgtttttaattgccag 21453908



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                            
Query: 394      agatgggcaggggcagaacaactactggtactgtgattgcttgcctgctcagacttcgaa 453
                ||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | ||||
Sbjct: 21453805 agatgggcaggggaagaacaactacaggtactgtgattgcttgtctgctgagattgcgaa 21453746

                                               
Query: 454      tcaatcacggcagacctattggaatgccagc 484
                |  |||| |||||||||||| || |||||||
Sbjct: 21453745 ttgatcatggcagacctattagattgccagc 21453715



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 21       tttgtgctacgagaagtggaaagaccgtacaagaatatgcttgagtacacgg 72
                ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 21454714 tttgtactacgtgaagtggaaagaccatacaagaatatgctggagtacacgg 21454663
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>ref|NM_116066.2| Arabidopsis thaliana unknown protein AT3G62010 mRNA, complete cds
          Length = 4663

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 248/320 (77%)
 Strand = Plus / Plus

                                                                        
Query: 15   aaaccttttgtgctacgagaagtggaaagaccgtacaagaatatgcttgagtacacgggg 74
            ||||| ||||| ||||||||||| ||||| || || ||||| ||||| || || ||||| 
Sbjct: 1829 aaaccatttgttctacgagaagttgaaaggccatataagaacatgctagaatatacggga 1888

                                                                        
Query: 75   atcggtcgtgatagagttgagcgtatggaagctcggttgaaggaggatattttacgggaa 134
            || | ||| |||||||||||  | ||||| |||||  | || ||||||||| |  | |||
Sbjct: 1889 attgatcgagatagagttgaagggatggaggctcgtctaaaagaggatattctgagagaa 1948

                                                                        
Query: 135  gcagaacggtatgatggtgcaataatggttattcatgaaactgacaatggtgagatcttt 194
            ||  | || ||||| ||||| |||||||| |||||||||||  |  ||||  |||| |||
Sbjct: 1949 gctaagcgatatgacggtgcgataatggtcattcatgaaaccaaagatggacagattttt 2008

                                                                        
Query: 195  gatgcatgggaaaatgtcaataatgaagctgttctgactccactggaggtatacaaatgt 254
            ||   ||||||||||||  ||  |||  ||||||  || || || ||||| |||||||||
Sbjct: 2009 gacttatgggaaaatgtagatgctgattctgttcaaacacccctcgaggtttacaaatgt 2068

                                                                        
Query: 255  ttggactctgaaggccttccaatcaaatatgcacgagtgcccattactgacggtaaggcc 314
            || ||  |||| ||  |||| || || |||||||| || || || ||||| ||||| |||
Sbjct: 2069 ttagaggctgatggttttcctattaagtatgcacgtgtacctataactgatggtaaagcc 2128

                                
Query: 315  cccaaaagttcagattttga 334
            |||||||| ||||| |||||
Sbjct: 2129 cccaaaagctcagactttga 2148



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                        
Query: 373  ctgctcttgtattcaattgccagatgggcaggggcagaacaactactggtactgtgattg 432
            ||||| |||| ||||||||||||||||| || || |||||||| ||||| ||||| ||||
Sbjct: 2187 ctgcttttgtcttcaattgccagatggggagaggtagaacaaccactggaactgtcattg 2246

             
Query: 433  c 433
            |
Sbjct: 2247 c 2247
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>gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19, complete sequence
          Length = 108651

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 141   cggtatgatggtgcaataatggttattcatgaaac 175
             |||||||||||||| ||||||||||||||||||||
Sbjct: 80730 cggtatgatggtgcgataatggttattcatgaaac 80696
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>gb|AC137831.27| Medicago truncatula clone mth2-34o21, complete sequence
          Length = 117693

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 393  cagatgggcaggggcagaacaactactggtactgtgattgcttgcct 439
            |||||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 4467 cagatgggtaggggcaggactactactggtacagtgatagcctgcct 4513



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 151  gtgcaataatggttattcatgaaactgacaatggtgagatctttgatgcatggga 205
            |||| |||||||||||||||||||| ||  ||||| | || |||||||| |||||
Sbjct: 4099 gtgccataatggttattcatgaaacagatgatggtcatatatttgatgcttggga 4153
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>emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14
          Length = 142001

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 149/191 (78%)
 Strand = Plus / Plus

                                                                          
Query: 144    tatgatggtgcaataatggttattcatgaaactgacaatggtgagatctttgatgcatgg 203
              ||||| ||||| |||||||| |||||||||||  |  ||||  |||| |||||   ||||
Sbjct: 131096 tatgacggtgcgataatggtcattcatgaaaccaaagatggacagatttttgacttatgg 131155

                                                                          
Query: 204    gaaaatgtcaataatgaagctgttctgactccactggaggtatacaaatgtttggactct 263
              ||||||||  ||  |||  ||||||  || || || ||||| ||||||||||| ||  ||
Sbjct: 131156 gaaaatgtagatgctgattctgttcaaacacccctcgaggtttacaaatgtttagaggct 131215

                                                                          
Query: 264    gaaggccttccaatcaaatatgcacgagtgcccattactgacggtaaggcccccaaaagt 323
              || ||  |||| || || |||||||| || || || ||||| ||||| ||||||||||| 
Sbjct: 131216 gatggttttcctattaagtatgcacgtgtacctataactgatggtaaagcccccaaaagc 131275

                         
Query: 324    tcagattttga 334
              ||||| |||||
Sbjct: 131276 tcagactttga 131286
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>gb|AC149038.2| Medicago truncatula chromosome 7 BAC clone mth2-29a5, complete
            sequence
          Length = 136566

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 151  gtgcaataatggttattcatgaaactgacaatggtgagatctttgatgcatggga 205
            |||| |||||||||||||||||||| ||  ||||| | || |||||||| |||||
Sbjct: 3042 gtgccataatggttattcatgaaacagatgatggtcatatatttgatgcttggga 2988



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 393  cagatgggcaggggcagaacaactactggtactgtgattgcttgcct 439
            |||||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 2674 cagatgggtaggggcaggactactactggtacagtgatagcctgcct 2628
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>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence
          Length = 205289

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 332   tgatatggtagcttttaatgtc 353
             ||||||||||||||||||||||
Sbjct: 77210 tgatatggtagcttttaatgtc 77231
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>gb|AC159376.12| Mus musculus 10 BAC RP23-114N21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 223292

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 195    gatgcatgggaaaatgtcaata 216
              ||||||||||||||||||||||
Sbjct: 164477 gatgcatgggaaaatgtcaata 164456
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>gb|AC111044.9| Mus musculus chromosome 10, clone RP23-299H4, complete sequence
          Length = 165614

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 195   gatgcatgggaaaatgtcaata 216
             ||||||||||||||||||||||
Sbjct: 55622 gatgcatgggaaaatgtcaata 55601
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>emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chromosome 2, complete
              sequence
          Length = 198946

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 531    ggagaagaaacaatagaccaca 552
              ||||||||||||||||||||||
Sbjct: 198822 ggagaagaaacaatagaccaca 198801
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>emb|AL845479.8| Mouse DNA sequence from clone RP23-232N20 on chromosome 2, complete
            sequence
          Length = 102283

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 531  ggagaagaaacaatagaccaca 552
            ||||||||||||||||||||||
Sbjct: 1876 ggagaagaaacaatagaccaca 1855
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>emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chromosome 9 Contains a novel
              gene, complete sequence
          Length = 163058

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 420    ggtactgtgattgcttgcctg 440
              |||||||||||||||||||||
Sbjct: 128487 ggtactgtgattgcttgcctg 128507
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>emb|AL354952.12| Human DNA sequence from clone RP11-536I1 on chromosome 9 Contains the
            3' end of a pseudogene similar to part of A kinase (PRKA)
            anchor protein 8 (AKAP8), complete sequence
          Length = 54764

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 420  ggtactgtgattgcttgcctg 440
            |||||||||||||||||||||
Sbjct: 6161 ggtactgtgattgcttgcctg 6181
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>gb|BC038730.1| Homo sapiens cDNA clone IMAGE:5267572
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 344  ttttaatgtcgcagctgcttgcaag 368
            ||||||||| |||||||||||||||
Sbjct: 1121 ttttaatgtggcagctgcttgcaag 1097
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>gb|AC116640.4| Homo sapiens BAC clone RP11-579B8 from 4, complete sequence
          Length = 15294

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 420 ggtactgtgattgcttgcctg 440
           |||||||||||||||||||||
Sbjct: 242 ggtactgtgattgcttgcctg 222
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>gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, complete sequence
          Length = 162877

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 420    ggtactgtgattgcttgcctg 440
              |||||||||||||||||||||
Sbjct: 141422 ggtactgtgattgcttgcctg 141402
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>gb|AC092538.5| Homo sapiens BAC clone RP11-101J2 from 4, complete sequence
          Length = 138613

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 420    ggtactgtgattgcttgcctg 440
              |||||||||||||||||||||
Sbjct: 136861 ggtactgtgattgcttgcctg 136841
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>gb|AC005144.1|AC005144 Homo sapiens chromosome 17, clone hRPK.465_C_12, complete sequence
          Length = 73362

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 321   agttcagattttgatatggta 341
             |||||||||||||||||||||
Sbjct: 14962 agttcagattttgatatggta 14942
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>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete
             sequence
          Length = 220275

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 320   aagttcagattttgatatggt 340
             |||||||||||||||||||||
Sbjct: 92938 aagttcagattttgatatggt 92958
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>gb|AC139375.3| Mus musculus chromosome 3, clone RP24-217F16, complete sequence
          Length = 152001

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   gatgcatgggaaaatgtcaataat 218
             ||||||||||||||| ||||||||
Sbjct: 36409 gatgcatgggaaaatttcaataat 36386
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 371     tgctgctcttgtattcaatt 390
               ||||||||||||||||||||
Sbjct: 1557198 tgctgctcttgtattcaatt 1557217
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>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence
          Length = 169543

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    tgctgctcttgtattcaatt 390
              ||||||||||||||||||||
Sbjct: 107826 tgctgctcttgtattcaatt 107845
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>gb|AC154385.2| Mus musculus BAC clone RP23-23O22 from chromosome 17, complete sequence
          Length = 221564

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tgcaaggatgctgctcttgt 382
             ||||||||||||||||||||
Sbjct: 10671 tgcaaggatgctgctcttgt 10652
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>gb|AC164646.3| Mus musculus BAC clone RP24-262I1 from chromosome 3, complete sequence
          Length = 175326

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gatgcatgggaaaatgtcaataat 218
             ||||||||||||||| ||||||||
Sbjct: 94556 gatgcatgggaaaatttcaataat 94579
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>gb|AC147119.2| Pan troglodytes BAC clone CH251-518N19 from Y, complete sequence
          Length = 241976

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ggtactgtgattgcttgcct 439
              ||||||||||||||||||||
Sbjct: 191079 ggtactgtgattgcttgcct 191060
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>gb|AC147246.3| Mus musculus BAC clone RP23-465M17 from chromosome 7, complete sequence
          Length = 198132

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 195    gatgcatgggaaaatgtcaataat 218
              ||||||||||| ||||||||||||
Sbjct: 193584 gatgcatgggacaatgtcaataat 193561
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>gb|AC134243.3| Mus musculus BAC clone RP24-90E15 from chromosome 17, complete sequence
          Length = 193151

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    tgcaaggatgctgctcttgt 382
              ||||||||||||||||||||
Sbjct: 124805 tgcaaggatgctgctcttgt 124786
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>gb|AC135640.5| Mus musculus BAC clone RP23-362A12 from chromosome 7, complete sequence
          Length = 205974

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   gatgcatgggaaaatgtcaataat 218
             ||||||||||| ||||||||||||
Sbjct: 19708 gatgcatgggacaatgtcaataat 19685
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>gb|U61952.1| Caenorhabditis elegans cosmid F42A9, complete sequence
          Length = 37875

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 471  attggaatgccagccatccaaaat 494
            ||||||| ||||||||||||||||
Sbjct: 9789 attggaaggccagccatccaaaat 9766
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>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05,
             complete sequence
          Length = 164943

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   agaagaaacaatagaccaca 552
             ||||||||||||||||||||
Sbjct: 64332 agaagaaacaatagaccaca 64313
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>gb|AC105902.2| Homo sapiens chromosome 3 clone RP11-578F5, complete sequence
          Length = 163115

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 520    attactcaagcggagaagaaacaa 543
              |||||||||||||| |||||||||
Sbjct: 149191 attactcaagcggaaaagaaacaa 149168
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 420      ggtactgtgattgcttgcct 439
                ||||||||||||||||||||
Sbjct: 11767441 ggtactgtgattgcttgcct 11767460



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 420      ggtactgtgattgcttgcct 439
                ||||||||||||||||||||
Sbjct: 10419024 ggtactgtgattgcttgcct 10419005



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 420     ggtactgtgattgcttgcct 439
               ||||||||||||||||||||
Sbjct: 2451975 ggtactgtgattgcttgcct 2451956
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>gb|AC010170.3| Homo sapiens 3p22-21.3 BAC RPCI11-487J21 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 173977

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 520   attactcaagcggagaagaaacaa 543
             |||||||||||||| |||||||||
Sbjct: 36141 attactcaagcggaaaagaaacaa 36118
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>gb|AC174482.4| Pan troglodytes BAC clone CH251-527O19 from chromosome y, complete
              sequence
          Length = 189332

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ggtactgtgattgcttgcct 439
              ||||||||||||||||||||
Sbjct: 138414 ggtactgtgattgcttgcct 138395
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>gb|AC160938.2| Pan troglodytes BAC clone CH251-901A9 from chromosome y, complete
              sequence
          Length = 212330

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ggtactgtgattgcttgcct 439
              ||||||||||||||||||||
Sbjct: 166279 ggtactgtgattgcttgcct 166260
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>gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, complete sequence
          Length = 132573

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   tgaagctgttctgactccac 237
             ||||||||||||||||||||
Sbjct: 69230 tgaagctgttctgactccac 69211
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>gb|AC159295.2| Mus musculus BAC clone RP23-273L18 from chromosome 13, complete sequence
          Length = 165475

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    ctgcttgcaaggatgctgct 377
              ||||||||||||||||||||
Sbjct: 137312 ctgcttgcaaggatgctgct 137293
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>dbj|AK029130.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732495G21 product:ACTIN, CYTOPLASMIC TYPE
            5 homolog [Gallus gallus], full insert sequence
          Length = 2611

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  ctgcttgcaaggatgctgct 377
            ||||||||||||||||||||
Sbjct: 2171 ctgcttgcaaggatgctgct 2152
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>dbj|AK029110.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732493G14 product:ACTIN, CYTOPLASMIC TYPE
            5 homolog [Gallus gallus], full insert sequence
          Length = 2738

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  ctgcttgcaaggatgctgct 377
            ||||||||||||||||||||
Sbjct: 2170 ctgcttgcaaggatgctgct 2151
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>ref|NM_069070.1| Caenorhabditis elegans CYtochrome P450 family member (cyp-33E3)
           (cyp-33E3) mRNA, complete cds
          Length = 711

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 471 attggaatgccagccatccaaaat 494
           ||||||| ||||||||||||||||
Sbjct: 215 attggaaggccagccatccaaaat 192
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 533      agaagaaacaatagaccaca 552
                ||||||||||||||||||||
Sbjct: 34446847 agaagaaacaatagaccaca 34446828
to top
>gb|AC015978.4|AC015978 Homo sapiens BAC clone RP11-529I21 from Y, complete sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    ggtactgtgattgcttgcct 439
              ||||||||||||||||||||
Sbjct: 107380 ggtactgtgattgcttgcct 107399
to top
>gb|AC007241.3|AC007241 Homo sapiens BAC clone RP11-157F24 from Y, complete sequence
          Length = 161868

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ggtactgtgattgcttgcct 439
              ||||||||||||||||||||
Sbjct: 127637 ggtactgtgattgcttgcct 127618
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>ref|NM_175497.2| Mus musculus RIKEN cDNA 4732495G21 gene (4732495G21Rik), mRNA
          Length = 2738

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  ctgcttgcaaggatgctgct 377
            ||||||||||||||||||||
Sbjct: 2170 ctgcttgcaaggatgctgct 2151
to top
>gb|AC146246.4| Pan troglodytes BAC clone clone CH251-154C4 from y, complete sequence
          Length = 149616

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   ggtactgtgattgcttgcct 439
             ||||||||||||||||||||
Sbjct: 41496 ggtactgtgattgcttgcct 41515
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>emb|AJ276021.1|PAL276021 Prevotella albensis gene for exo-1,4-beta-glucosidase
          Length = 2346

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  caagaatatgcttgagtaca 69
           ||||||||||||||||||||
Sbjct: 978 caagaatatgcttgagtaca 997
to top
>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y
          Length = 1351786

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ggtactgtgattgcttgcct 439
              ||||||||||||||||||||
Sbjct: 852259 ggtactgtgattgcttgcct 852240



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   ggtactgtgattgcttgcct 439
             ||||||||||||||||||||
Sbjct: 21563 ggtactgtgattgcttgcct 21582
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>gb|AC161006.2| Pan troglodytes BAC clone CH251-842O13 from chromosome y, complete
             sequence
          Length = 201209

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   ggtactgtgattgcttgcct 439
             ||||||||||||||||||||
Sbjct: 48723 ggtactgtgattgcttgcct 48742
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>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete
             sequence
          Length = 138387

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   agaagaaacaatagaccaca 552
             ||||||||||||||||||||
Sbjct: 68143 agaagaaacaatagaccaca 68124
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>dbj|AP002961.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-2I22, complete
             sequence
          Length = 157903

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   gaagctcggttgaaggagga 121
             ||||||||||||||||||||
Sbjct: 29500 gaagctcggttgaaggagga 29481
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>gb|AC101944.16| Mus musculus chromosome 1, clone RP24-118B6, complete sequence
          Length = 174560

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gatgcatgggaaaatgtcaataat 218
             ||||||||||||||| ||||||||
Sbjct: 35442 gatgcatgggaaaatttcaataat 35465
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>emb|AL136158.25| Mouse DNA sequence from clone RP21-538M10 on chromosome 17, complete
              sequence
          Length = 190737

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 195    gatgcatgggaaaatgtcaataat 218
              ||||||||||||||| ||||||||
Sbjct: 105062 gatgcatgggaaaatttcaataat 105039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,736,665
Number of Sequences: 3902068
Number of extensions: 4736665
Number of successful extensions: 96814
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96507
Number of HSP's gapped (non-prelim): 305
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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