Clone Name | bah63a08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK059874.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F06, full insert sequence Length = 1045 Score = 371 bits (187), Expect = 2e-99 Identities = 391/459 (85%) Strand = Plus / Plus Query: 86 gaagatggttgtccaggagttcgccgtcgatctcgacaagcctcttgttttccaggttgg 145 |||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||| Sbjct: 116 gaagatggttgtccaggagttcaccgttgatctgaacaagcctctcgttttccaggttgg 175 Query: 146 ccatctcgaggaacactaccaggaatgggttcaccaacccatcgtcagcaaagaaggtcc 205 |||||| ||||||| || |||||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 176 ccatcttgaggaacgttatcaggaatgggttcatcaacctatcgtgagcaaggaaggtcc 235 Query: 206 acgctttttcgcaaatgataccatggagttcttgacacgcacaaagtggtgggctgtgcc 265 ||||||||||| ||||||| | ||||||||||||| ||||||||||||| |||||||| Sbjct: 236 acgctttttcggaaatgatgtcctggagttcttgacgcgcacaaagtggtttgctgtgcc 295 Query: 266 agtcatatggctacccgtcgtctgctggctgtttgccaagtctattctgatgggtcacac 325 | ||||||||| || |||||||||||| || ||| || ||||||| ||||||||| || Sbjct: 296 aaccatatggctgcctgtcgtctgctggttgcttgtgaaatctattcggatgggtcatac 355 Query: 326 cattcaggaattaatccttatggccctgtttggagtgtttgtctggacgttgattgagta 385 ||||||||| || || |||||||| |||||| | || | ||||| ||||| ||||| Sbjct: 356 tattcaggaagtaggtctaatggccctatttggaatattcatttggacattgatcgagta 415 Query: 386 cagtttgcaccgcttcctcttccacatcgagacgaagagctattggtcgaacacagcaca 445 | ||||||||||||||| |||||||| ||||| || | ||||||| | ||||||||||| Sbjct: 416 tactttgcaccgcttcctattccacattgagaccaaaacctattgggcaaacacagcaca 475 Query: 446 ttacttaatccatggatgccaccataagcatcctatggactcgctcaggctcgtattccc 505 |||| | | |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 476 ttaccttcttcatggatgccaccataagcatcctatggactcactcaggcttgtattccc 535 Query: 506 tcctgctggggcagcgatcttatgtgtgccgttctggaa 544 ||| ||| |||| || || ||||||||||||||||| Sbjct: 536 ccctactgcaacagcaattttgtgtgtgccgttctggaa 574
>ref|NM_184996.1| Oryza sativa (japonica cultivar-group), mRNA Length = 714 Score = 363 bits (183), Expect = 4e-97 Identities = 387/455 (85%) Strand = Plus / Plus Query: 90 atggttgtccaggagttcgccgtcgatctcgacaagcctcttgttttccaggttggccat 149 |||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||| Sbjct: 1 atggttgtccaggagttcaccgttgatctgaacaagcctctcgttttccaggttggccat 60 Query: 150 ctcgaggaacactaccaggaatgggttcaccaacccatcgtcagcaaagaaggtccacgc 209 || ||||||| || |||||||||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 61 cttgaggaacgttatcaggaatgggttcatcaacctatcgtgagcaaggaaggtccacgc 120 Query: 210 tttttcgcaaatgataccatggagttcttgacacgcacaaagtggtgggctgtgccagtc 269 ||||||| ||||||| | ||||||||||||| ||||||||||||| ||||||||| | Sbjct: 121 tttttcggaaatgatgtcctggagttcttgacgcgcacaaagtggtttgctgtgccaacc 180 Query: 270 atatggctacccgtcgtctgctggctgtttgccaagtctattctgatgggtcacaccatt 329 |||||||| || |||||||||||| || ||| || ||||||| ||||||||| || ||| Sbjct: 181 atatggctgcctgtcgtctgctggttgcttgtgaaatctattcggatgggtcatactatt 240 Query: 330 caggaattaatccttatggccctgtttggagtgtttgtctggacgttgattgagtacagt 389 |||||| || || |||||||| |||||| | || | ||||| ||||| ||||| | | Sbjct: 241 caggaagtaggtctaatggccctatttggaatattcatttggacattgatcgagtatact 300 Query: 390 ttgcaccgcttcctcttccacatcgagacgaagagctattggtcgaacacagcacattac 449 |||||||||||||| |||||||| ||||| || | ||||||| | ||||||||||||||| Sbjct: 301 ttgcaccgcttcctattccacattgagaccaaaacctattgggcaaacacagcacattac 360 Query: 450 ttaatccatggatgccaccataagcatcctatggactcgctcaggctcgtattccctcct 509 | | |||||||||||||||||||||||||||||||| |||||||| |||||||| ||| Sbjct: 361 cttcttcatggatgccaccataagcatcctatggactcactcaggcttgtattcccccct 420 Query: 510 gctggggcagcgatcttatgtgtgccgttctggaa 544 ||| |||| || || ||||||||||||||||| Sbjct: 421 actgcaacagcaattttgtgtgtgccgttctggaa 455
>dbj|AK103085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118H09, full insert sequence Length = 1229 Score = 355 bits (179), Expect = 1e-94 Identities = 389/459 (84%) Strand = Plus / Plus Query: 86 gaagatggttgtccaggagttcgccgtcgatctcgacaagcctcttgttttccaggttgg 145 |||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||| Sbjct: 217 gaagatggttgtccaggagttcaccgttgatctgaacaagcctctcgttttccaggttgg 276 Query: 146 ccatctcgaggaacactaccaggaatgggttcaccaacccatcgtcagcaaagaaggtcc 205 ||||| ||||||| || |||||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 277 ccatcatgaggaacgttatcaggaatgggttcatcaacctatcgtgagcaaggaaggtcc 336 Query: 206 acgctttttcgcaaatgataccatggagttcttgacacgcacaaagtggtgggctgtgcc 265 ||||||||||| ||||||| | ||||||||||||| ||||||||||||| |||||||| Sbjct: 337 acgctttttcggaaatgatgtcctggagttcttgacgcgcacaaagtggtttgctgtgcc 396 Query: 266 agtcatatggctacccgtcgtctgctggctgtttgccaagtctattctgatgggtcacac 325 | ||||||||| || |||||||||||| || ||| || ||||||| ||||||||| || Sbjct: 397 aaccatatggctgcctgtcgtctgctggttgcttgtgaaatctattcggatgggtcatac 456 Query: 326 cattcaggaattaatccttatggccctgtttggagtgtttgtctggacgttgattgagta 385 ||||||||| || || |||||||| |||||| | || | ||||| ||||| ||||| Sbjct: 457 tattcaggaagtaggtctaatggccctatttggaatattcatttggacattgatcgagta 516 Query: 386 cagtttgcaccgcttcctcttccacatcgagacgaagagctattggtcgaacacagcaca 445 | ||||||||||||||| |||||||| | ||| || | ||||||| | ||||||||||| Sbjct: 517 tactttgcaccgcttcctattccacattgggaccaaaacctattgggcaaacacagcaca 576 Query: 446 ttacttaatccatggatgccaccataagcatcctatggactcgctcaggctcgtattccc 505 |||| | | |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 577 ttaccttcttcatggatgccaccataagcatcctatggactcactcaggcttgtattccc 636 Query: 506 tcctgctggggcagcgatcttatgtgtgccgttctggaa 544 ||| ||| |||| || || ||||||||||||||||| Sbjct: 637 ccctactgcaacagcaattttgtgtgtgccgttctggaa 675
>gb|BT018076.1| Zea mays clone EL01N0551G08.c mRNA sequence Length = 1084 Score = 317 bits (160), Expect = 2e-83 Identities = 358/424 (84%) Strand = Plus / Plus Query: 86 gaagatggttgtccaggagttcgccgtcgatctcgacaagcctcttgttttccaggttgg 145 |||||||||||||||||||||| | || |||||| ||||||| ||||||||||||||||| Sbjct: 99 gaagatggttgtccaggagttcacagttgatctcaacaagccccttgttttccaggttgg 158 Query: 146 ccatctcgaggaacactaccaggaatgggttcaccaacccatcgtcagcaaagaaggtcc 205 ||||| ||||||| ||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 159 tcatcttgaggaacggtaccaggaatgggttcaccaaccgatcgtcagcaaggagggtcc 218 Query: 206 acgctttttcgcaaatgataccatggagttcttgacacgcacaaagtggtgggctgtgcc 265 ||||||||||| ||||||| | ||||||||||||| ||||| ||||||||||||||||| Sbjct: 219 acgctttttcggaaatgatgtcctggagttcttgactcgcacgaagtggtgggctgtgcc 278 Query: 266 agtcatatggctacccgtcgtctgctggctgtttgccaagtctattctgatgggtcacac 325 | |||||||| || || |||||||| ||| | | || ||||||||||||||||| || Sbjct: 279 aactatatggctgcctgttgtctgctgcctgctcgtgaaatctattctgatgggtcatac 338 Query: 326 cattcaggaattaatccttatggccctgtttggagtgtttgtctggacgttgattgagta 385 | ||||||| || | ||||| |||||||| | ||| | |||||| |||| || || Sbjct: 339 cgttcaggacgtagctatgatggctctgtttgggatatttatttggacgctgatcgaata 398 Query: 386 cagtttgcaccgcttcctcttccacatcgagacgaagagctattggtcgaacacagcaca 445 || ||||||||||||||| |||||||||||||| |||| ||| |||| |||||| ||||| Sbjct: 399 cactttgcaccgcttcctgttccacatcgagaccaagacctactggtggaacaccgcaca 458 Query: 446 ttacttaatccatggatgccaccataagcatcctatggactcgctcaggctcgtattccc 505 |||| | | || || |||||||||||||| || ||||||||||||||||| || || || Sbjct: 459 ttaccttcttcacgggtgccaccataagcaccccatggactcgctcaggcttgtgtttcc 518 Query: 506 tcct 509 |||| Sbjct: 519 tcct 522
>gb|AY106784.1| Zea mays PCO100577 mRNA sequence Length = 1072 Score = 317 bits (160), Expect = 2e-83 Identities = 358/424 (84%) Strand = Plus / Plus Query: 86 gaagatggttgtccaggagttcgccgtcgatctcgacaagcctcttgttttccaggttgg 145 |||||||||||||||||||||| | || |||||| ||||||| ||||||||||||||||| Sbjct: 156 gaagatggttgtccaggagttcacagttgatctcaacaagccccttgttttccaggttgg 215 Query: 146 ccatctcgaggaacactaccaggaatgggttcaccaacccatcgtcagcaaagaaggtcc 205 |||||| ||||||| ||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 216 ccatcttgaggaacggtaccaggaatgggttcaccaaccgatcgtcagcaaggagggtcc 275 Query: 206 acgctttttcgcaaatgataccatggagttcttgacacgcacaaagtggtgggctgtgcc 265 ||||||||||| ||||||| | ||||||||||||| ||||| ||||||||||||||||| Sbjct: 276 acgctttttcggaaatgatgtcctggagttcttgactcgcacgaagtggtgggctgtgcc 335 Query: 266 agtcatatggctacccgtcgtctgctggctgtttgccaagtctattctgatgggtcacac 325 | |||||||| || || |||||||| ||| | | || ||||||||||||||||| || Sbjct: 336 aactatatggctgcctgttgtctgctgcctgctcgtgaaatctattctgatgggtcatac 395 Query: 326 cattcaggaattaatccttatggccctgtttggagtgtttgtctggacgttgattgagta 385 | ||||||| || | ||||| |||||||| | ||| | |||||| |||| || || Sbjct: 396 cgttcaggacgtagctatgatggctctgtttgggatatttatttggacgctgatcgaata 455 Query: 386 cagtttgcaccgcttcctcttccacatcgagacgaagagctattggtcgaacacagcaca 445 || ||||||||||||||| |||||||||||||| |||| ||| |||| |||||| ||||| Sbjct: 456 cactttgcaccgcttcctgttccacatcgagaccaagacctactggtggaacaccgcaca 515 Query: 446 ttacttaatccatggatgccaccataagcatcctatggactcgctcaggctcgtattccc 505 |||| | | || || |||||||||||||| || |||||||| |||||||| || || || Sbjct: 516 ttaccttcttcacgggtgccaccataagcaccccatggactcactcaggcttgtgtttcc 575 Query: 506 tcct 509 |||| Sbjct: 576 tcct 579
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 3e-24 Identities = 166/201 (82%) Strand = Plus / Plus Query: 232 agttcttgacacgcacaaagtggtgggctgtgccagtcatatggctacccgtcgtctgct 291 |||||||||| ||||||||||||| ||||||||| ||||||||| || |||||||||| Sbjct: 32073361 agttcttgacgcgcacaaagtggtttgctgtgccaaccatatggctgcctgtcgtctgct 32073420 Query: 292 ggctgtttgccaagtctattctgatgggtcacaccattcaggaattaatccttatggccc 351 || || ||| || ||||||| ||||||||| || ||||||||| || || ||||||| Sbjct: 32073421 ggttgcttgtgaaatctattcggatgggtcatactattcaggaagtaggtctaatggccc 32073480 Query: 352 tgtttggagtgtttgtctggacgttgattgagtacagtttgcaccgcttcctcttccaca 411 | |||||| | || | ||||| ||||| ||||| | ||||||||||||||| ||||||| Sbjct: 32073481 tatttggaatattcatttggacattgatcgagtatactttgcaccgcttcctattccaca 32073540 Query: 412 tcgagacgaagagctattggt 432 | ||||| || | |||||||| Sbjct: 32073541 ttgagaccaaaacctattggt 32073561 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 139 aggttggccatctcgaggaacactaccaggaatgggttcaccaacccatcgtcagcaaag 198 ||||||||||||| ||||||| || |||||||||||||| ||||| ||||| ||||| | Sbjct: 32073197 aggttggccatcttgaggaacgttatcaggaatgggttcatcaacctatcgtgagcaagg 32073256 Query: 199 aaggtccacgctttttcgcaaatgat 224 |||||||||||||||||| ||||||| Sbjct: 32073257 aaggtccacgctttttcggaaatgat 32073282 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 435 aacacagcacattacttaatccatggatgccaccataagcatcctatggactcgctcagg 494 ||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||| Sbjct: 32073649 aacacagcacattaccttcttcatggatgccaccataagcatcctatggactcactcagg 32073708 Query: 495 ctcgtattccc 505 || |||||||| Sbjct: 32073709 cttgtattccc 32073719 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 86 gaagatggttgtccaggagttcgccgtcgatctcgacaagcctcttgttttccaggtt 143 |||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||| Sbjct: 32072877 gaagatggttgtccaggagttcaccgttgatctgaacaagcctctcgttttccaggtt 32072934
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 121 bits (61), Expect = 3e-24 Identities = 166/201 (82%) Strand = Plus / Plus Query: 232 agttcttgacacgcacaaagtggtgggctgtgccagtcatatggctacccgtcgtctgct 291 |||||||||| ||||||||||||| ||||||||| ||||||||| || |||||||||| Sbjct: 74486 agttcttgacgcgcacaaagtggtttgctgtgccaaccatatggctgcctgtcgtctgct 74545 Query: 292 ggctgtttgccaagtctattctgatgggtcacaccattcaggaattaatccttatggccc 351 || || ||| || ||||||| ||||||||| || ||||||||| || || ||||||| Sbjct: 74546 ggttgcttgtgaaatctattcggatgggtcatactattcaggaagtaggtctaatggccc 74605 Query: 352 tgtttggagtgtttgtctggacgttgattgagtacagtttgcaccgcttcctcttccaca 411 | |||||| | || | ||||| ||||| ||||| | ||||||||||||||| ||||||| Sbjct: 74606 tatttggaatattcatttggacattgatcgagtatactttgcaccgcttcctattccaca 74665 Query: 412 tcgagacgaagagctattggt 432 | ||||| || | |||||||| Sbjct: 74666 ttgagaccaaaacctattggt 74686 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 139 aggttggccatctcgaggaacactaccaggaatgggttcaccaacccatcgtcagcaaag 198 ||||||||||||| ||||||| || |||||||||||||| ||||| ||||| ||||| | Sbjct: 74322 aggttggccatcttgaggaacgttatcaggaatgggttcatcaacctatcgtgagcaagg 74381 Query: 199 aaggtccacgctttttcgcaaatgat 224 |||||||||||||||||| ||||||| Sbjct: 74382 aaggtccacgctttttcggaaatgat 74407 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 435 aacacagcacattacttaatccatggatgccaccataagcatcctatggactcgctcagg 494 ||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||| Sbjct: 74774 aacacagcacattaccttcttcatggatgccaccataagcatcctatggactcactcagg 74833 Query: 495 ctcgtattccc 505 || |||||||| Sbjct: 74834 cttgtattccc 74844 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 86 gaagatggttgtccaggagttcgccgtcgatctcgacaagcctcttgttttccaggtt 143 |||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||| Sbjct: 74002 gaagatggttgtccaggagttcaccgttgatctgaacaagcctctcgttttccaggtt 74059
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 3e-24 Identities = 166/201 (82%) Strand = Plus / Plus Query: 232 agttcttgacacgcacaaagtggtgggctgtgccagtcatatggctacccgtcgtctgct 291 |||||||||| ||||||||||||| ||||||||| ||||||||| || |||||||||| Sbjct: 32163873 agttcttgacgcgcacaaagtggtttgctgtgccaaccatatggctgcctgtcgtctgct 32163932 Query: 292 ggctgtttgccaagtctattctgatgggtcacaccattcaggaattaatccttatggccc 351 || || ||| || ||||||| ||||||||| || ||||||||| || || ||||||| Sbjct: 32163933 ggttgcttgtgaaatctattcggatgggtcatactattcaggaagtaggtctaatggccc 32163992 Query: 352 tgtttggagtgtttgtctggacgttgattgagtacagtttgcaccgcttcctcttccaca 411 | |||||| | || | ||||| ||||| ||||| | ||||||||||||||| ||||||| Sbjct: 32163993 tatttggaatattcatttggacattgatcgagtatactttgcaccgcttcctattccaca 32164052 Query: 412 tcgagacgaagagctattggt 432 | ||||| || | |||||||| Sbjct: 32164053 ttgagaccaaaacctattggt 32164073 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 139 aggttggccatctcgaggaacactaccaggaatgggttcaccaacccatcgtcagcaaag 198 ||||||||||||| ||||||| || |||||||||||||| ||||| ||||| ||||| | Sbjct: 32163709 aggttggccatcttgaggaacgttatcaggaatgggttcatcaacctatcgtgagcaagg 32163768 Query: 199 aaggtccacgctttttcgcaaatgat 224 |||||||||||||||||| ||||||| Sbjct: 32163769 aaggtccacgctttttcggaaatgat 32163794 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 435 aacacagcacattacttaatccatggatgccaccataagcatcctatggactcgctcagg 494 ||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||| Sbjct: 32164161 aacacagcacattaccttcttcatggatgccaccataagcatcctatggactcactcagg 32164220 Query: 495 ctcgtattccc 505 || |||||||| Sbjct: 32164221 cttgtattccc 32164231 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 86 gaagatggttgtccaggagttcgccgtcgatctcgacaagcctcttgttttccaggtt 143 |||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||| Sbjct: 32163389 gaagatggttgtccaggagttcaccgttgatctgaacaagcctctcgttttccaggtt 32163446
>ref|XM_322749.1| Neurospora crassa OR74A hypothetical protein (NCU03492.1) partial mRNA Length = 1116 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 367 tctggacgttgattgagtacagtttgcaccgcttcctcttccac 410 ||||||||||||||||||||| |||||| |||||||| |||||| Sbjct: 674 tctggacgttgattgagtacattttgcatcgcttcctgttccac 717
>ref|XM_950786.1| Neurospora crassa OR74A hypothetical protein (NCU03492.1) partial mRNA Length = 1116 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 367 tctggacgttgattgagtacagtttgcaccgcttcctcttccac 410 ||||||||||||||||||||| |||||| |||||||| |||||| Sbjct: 674 tctggacgttgattgagtacattttgcatcgcttcctgttccac 717
>emb|AL669988.1|NCB23H20 Neurospora crassa DNA linkage group II BAC contig B23H20 Length = 122151 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 367 tctggacgttgattgagtacagtttgcaccgcttcctcttccac 410 ||||||||||||||||||||| |||||| |||||||| |||||| Sbjct: 50326 tctggacgttgattgagtacattttgcatcgcttcctgttccac 50369
>ref|XM_754701.1| Ustilago maydis 521 hypothetical protein (UM03647.1) partial mRNA Length = 1185 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 393 caccgcttcctcttccacatcga 415 ||||||||||||||||||||||| Sbjct: 796 caccgcttcctcttccacatcga 818
>dbj|AP004983.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT04L20, TM0437b, complete sequence Length = 51960 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 454 tccatggatgccaccataagcatcctatgga 484 ||||||| ||||||||||||||||| ||||| Sbjct: 19984 tccatggctgccaccataagcatcccatgga 20014
>gb|AC144548.8| Homo sapiens 12 BAC RP11-478C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174974 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 attccctcctgctggggcagc 520 ||||||||||||||||||||| Sbjct: 31248 attccctcctgctggggcagc 31228
>gb|AC005907.1| Homo sapiens 12q24.1 PAC P443K8 (Rosewell Park Cancer Institute Human Pac Library) complete sequence Length = 36200 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 attccctcctgctggggcagc 520 ||||||||||||||||||||| Sbjct: 24367 attccctcctgctggggcagc 24347
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 cttgttttccaggttggccatctcg 153 |||||||||||||||| |||||||| Sbjct: 1958947 cttgttttccaggttgaccatctcg 1958971
>ref|NM_129030.2| Arabidopsis thaliana FAH1 (FATTY ACID HYDROXYLASE 1); catalytic AT2G34770 (FAH1) mRNA, complete cds Length = 1142 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 aggaatgggttcaccaacccatcg 189 ||||||||||||||||||| |||| Sbjct: 316 aggaatgggttcaccaacctatcg 339
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09, complete sequence Length = 159600 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 caggaatgggttcaccaacc 184 |||||||||||||||||||| Sbjct: 62904 caggaatgggttcaccaacc 62923
>gb|AC119162.12| Mus musculus chromosome 3, clone RP23-231L12, complete sequence Length = 201218 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 tttgccaagtctattctgat 316 |||||||||||||||||||| Sbjct: 105789 tttgccaagtctattctgat 105808
>emb|Z81088.1|CEF53F1 Caenorhabditis elegans Cosmid F53F1, complete sequence Length = 39478 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 cctcctgctggggcagcgat 523 |||||||||||||||||||| Sbjct: 26011 cctcctgctggggcagcgat 25992
>gb|BT000482.1| Arabidopsis thaliana fatty acid hydroxylase (FAH1) (At2g34770/T29F13.2) mRNA, complete cds Length = 714 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 aggaatgggttcaccaacccatcg 189 ||||||||||||||||||| |||| Sbjct: 77 aggaatgggttcaccaacctatcg 100
>gb|AC159281.3| Mus musculus BAC clone RP23-321H9 from chromosome 3, complete sequence Length = 229114 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tttgccaagtctattctgat 316 |||||||||||||||||||| Sbjct: 220855 tttgccaagtctattctgat 220836
>gb|AC003096.3| Arabidopsis thaliana chromosome 2 clone T29F13 map ve016, complete sequence Length = 69817 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 aggaatgggttcaccaacccatcg 189 ||||||||||||||||||| |||| Sbjct: 5527 aggaatgggttcaccaacctatcg 5504
>gb|AY050326.1| Arabidopsis thaliana At2g34770/T29F13.2 mRNA, complete cds Length = 827 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 aggaatgggttcaccaacccatcg 189 ||||||||||||||||||| |||| Sbjct: 117 aggaatgggttcaccaacctatcg 140
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccaggagttcgccgtcgatc 117 |||||||||||||||||||| Sbjct: 5218905 ccaggagttcgccgtcgatc 5218886
>ref|NM_073924.2| Caenorhabditis elegans F53F1.5 (cuticlin) mRNA, complete cds Length = 871 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 cctcctgctggggcagcgat 523 |||||||||||||||||||| Sbjct: 289 cctcctgctggggcagcgat 270
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 caggaatgggttcaccaacc 184 |||||||||||||||||||| Sbjct: 26937937 caggaatgggttcaccaacc 26937956
>ref|NM_001011258.1| Xenopus tropicalis hypothetical LOC496708 (LOC496708), mRNA Length = 951 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 aaagtggtgggctgtgccag 267 |||||||||||||||||||| Sbjct: 50 aaagtggtgggctgtgccag 69
>gb|AE005063.1| Halobacterium sp. NRC-1 section 94 of 170 of the complete genome Length = 11844 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 tccaggagttcgccgtcgatctcg 120 |||||||||||| ||||||||||| Sbjct: 1054 tccaggagttcggcgtcgatctcg 1077
>dbj|AK069213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010G06, full insert sequence Length = 1392 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 caggaatgggttcaccaacc 184 |||||||||||||||||||| Sbjct: 241 caggaatgggttcaccaacc 260
>gb|BC087569.2| Xenopus tropicalis hypothetical LOC496708, mRNA (cDNA clone MGC:97680 IMAGE:6982160), complete cds Length = 951 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 aaagtggtgggctgtgccag 267 |||||||||||||||||||| Sbjct: 50 aaagtggtgggctgtgccag 69
>dbj|AK061110.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D02, full insert sequence Length = 1438 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 caggaatgggttcaccaacc 184 |||||||||||||||||||| Sbjct: 263 caggaatgggttcaccaacc 282
>emb|CR761166.2| Xenopus tropicalis finished cDNA, clone TEgg038a23 Length = 1035 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 aaagtggtgggctgtgccag 267 |||||||||||||||||||| Sbjct: 136 aaagtggtgggctgtgccag 155
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 caggaatgggttcaccaacc 184 |||||||||||||||||||| Sbjct: 26866107 caggaatgggttcaccaacc 26866126
>emb|AL831803.4|CNS08CAG Oryza sativa chromosome 12, . BAC OSJNBb0016P08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142370 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 caggaatgggttcaccaacc 184 |||||||||||||||||||| Sbjct: 141904 caggaatgggttcaccaacc 141923
>gb|AF021804.1|AF021804 Arabidopsis thaliana fatty acid hydroxylase Fah1p (FAH1) mRNA, complete cds Length = 714 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 aggaatgggttcaccaacccatcg 189 ||||||||||||||||||| |||| Sbjct: 77 aggaatgggttcaccaacctatcg 100
>emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on chromosome 11, complete sequence Length = 222330 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 286 tctgctggctgtttgccaagtctattct 313 ||||||||| ||| |||||||||||||| Sbjct: 184873 tctgctggcagttggccaagtctattct 184900
>emb|X74838.1|CECUT2 C.elegans cut-2 gene for cuticlin 2 Length = 1589 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 cctcctgctggggcagcgat 523 |||||||||||||||||||| Sbjct: 963 cctcctgctggggcagcgat 944 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,196,693 Number of Sequences: 3902068 Number of extensions: 4196693 Number of successful extensions: 84252 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84090 Number of HSP's gapped (non-prelim): 160 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)