Clone Name | bah62k22 |
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Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 240 bits (121), Expect = 1e-60 Identities = 166/182 (91%) Strand = Plus / Minus Query: 19 gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78 ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct: 450138 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 450079 Query: 79 gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138 ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct: 450078 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 450019 Query: 139 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198 |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 450018 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 449959 Query: 199 gt 200 || Sbjct: 449958 gt 449957
>gb|AY236227.1| Oryza sativa (indica cultivar-group) alanine aminotransferase mRNA, complete cds Length = 1558 Score = 240 bits (121), Expect = 1e-60 Identities = 166/182 (91%) Strand = Plus / Plus Query: 19 gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78 ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct: 64 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 123 Query: 79 gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138 ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct: 124 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 183 Query: 139 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198 |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 184 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 243 Query: 199 gt 200 || Sbjct: 244 gt 245
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 240 bits (121), Expect = 1e-60 Identities = 166/182 (91%) Strand = Plus / Minus Query: 19 gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78 ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct: 52302 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 52243 Query: 79 gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138 ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct: 52242 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 52183 Query: 139 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198 |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 52182 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 52123 Query: 199 gt 200 || Sbjct: 52122 gt 52121
>dbj|AK067732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118J02, full insert sequence Length = 1970 Score = 240 bits (121), Expect = 1e-60 Identities = 166/182 (91%) Strand = Plus / Plus Query: 19 gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78 ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct: 113 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 172 Query: 79 gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138 ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct: 173 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 232 Query: 139 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198 |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 233 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 292 Query: 199 gt 200 || Sbjct: 293 gt 294
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1567_G09 Length = 121388 Score = 240 bits (121), Expect = 1e-60 Identities = 166/182 (91%) Strand = Plus / Minus Query: 19 gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78 ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct: 4050 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 3991 Query: 79 gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138 ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct: 3990 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 3931 Query: 139 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198 |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 3930 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 3871 Query: 199 gt 200 || Sbjct: 3870 gt 3869
>dbj|AK060835.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C09, full insert sequence Length = 1581 Score = 85.7 bits (43), Expect = 5e-14 Identities = 58/63 (92%) Strand = Plus / Plus Query: 138 cttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgcca 197 ||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 1 cttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgcca 60 Query: 198 ggt 200 ||| Sbjct: 61 ggt 63
>gb|DQ118094.1| Vitis labrusca AlaT1 mRNA, complete cds Length = 1434 Score = 54.0 bits (27), Expect = 2e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 109 gagctccagaaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgccctc 168 ||||| |||||||| || || | ||| || ||||| ||||| |||||||| || || || Sbjct: 94 gagcttcagaaggaagggaaaaagattattttcacaaacgtgggcaaccctcatgctcta 153 Query: 169 ggacagaagccactcaccttcccacgccaggtggt 203 |||||||||||||| || || || ||||||||||| Sbjct: 154 ggacagaagccactgacttttcctcgccaggtggt 188
>gb|U31975.1|CRU31975 Chlamydomonas reinhardtii alanine aminotransferase mRNA, complete cds Length = 2534 Score = 54.0 bits (27), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 118 aaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgc 164 |||||||||||| |||||| ||||| |||||||| ||||||||||| Sbjct: 313 aaggagggcaaggagatcattttcacaaacgtcggaaacccgcacgc 359
>gb|DQ118095.1| Vitis vinifera AlaT1 mRNA, complete cds Length = 1455 Score = 46.1 bits (23), Expect = 0.042 Identities = 77/95 (81%) Strand = Plus / Plus Query: 109 gagctccagaaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgccctc 168 ||||| |||||||| || || | ||| || ||||| ||||| |||||||| || || || Sbjct: 94 gagcttcagaaggaagggaaaaagattattttcacaaacgtgggcaaccctcatgctcta 153 Query: 169 ggacagaagccactcaccttcccacgccaggtggt 203 |||||||| ||||| || || || ||||||||||| Sbjct: 154 ggacagaaaccactgacttttcctcgccaggtggt 188
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 42.1 bits (21), Expect = 0.65 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 caacgtcggcaacccgcacgccctc 168 ||||| ||||||||||||||||||| Sbjct: 788135 caacgacggcaacccgcacgccctc 788159
>emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 in linkage group 7, complete sequence Length = 79440 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggagggcaagaggatcatct 139 |||||||||||||||||||| Sbjct: 736 ggagggcaagaggatcatct 717
>ref|XM_681871.1| PREDICTED: Danio rerio similar to Nedd4-binding protein 1 (N4BP1) (LOC558641), partial mRNA Length = 458 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ggagggcaagaggatcatct 139 |||||||||||||||||||| Sbjct: 216 ggagggcaagaggatcatct 235 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,149,571 Number of Sequences: 3902068 Number of extensions: 1149571 Number of successful extensions: 87074 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87010 Number of HSP's gapped (non-prelim): 64 length of query: 203 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 181 effective length of database: 17,147,199,772 effective search space: 3103643158732 effective search space used: 3103643158732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)