ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62k22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 240 1e-60
2gb|AY236227.1| Oryza sativa (indica cultivar-group) alanine amin... 240 1e-60
3dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 240 1e-60
4dbj|AK067732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 1e-60
5dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic D... 240 1e-60
6dbj|AK060835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 5e-14
7gb|DQ118094.1| Vitis labrusca AlaT1 mRNA, complete cds 54 2e-04
8gb|U31975.1|CRU31975 Chlamydomonas reinhardtii alanine aminotran... 54 2e-04
9gb|DQ118095.1| Vitis vinifera AlaT1 mRNA, complete cds 46 0.042
10gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 42 0.65
11emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 ... 40 2.6
12ref|XM_681871.1| PREDICTED: Danio rerio similar to Nedd4-binding... 40 2.6

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score =  240 bits (121), Expect = 1e-60
 Identities = 166/182 (91%)
 Strand = Plus / Minus

                                                                          
Query: 19     gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78
              ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| 
Sbjct: 450138 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 450079

                                                                          
Query: 79     gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138
              ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 450078 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 450019

                                                                          
Query: 139    ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198
              |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 450018 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 449959

                
Query: 199    gt 200
              ||
Sbjct: 449958 gt 449957



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>gb|AY236227.1| Oryza sativa (indica cultivar-group) alanine aminotransferase mRNA,
           complete cds
          Length = 1558

 Score =  240 bits (121), Expect = 1e-60
 Identities = 166/182 (91%)
 Strand = Plus / Plus

                                                                       
Query: 19  gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78
           ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| 
Sbjct: 64  gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 123

                                                                       
Query: 79  gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138
           ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 124 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 183

                                                                       
Query: 139 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198
           |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 184 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 243

             
Query: 199 gt 200
           ||
Sbjct: 244 gt 245



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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score =  240 bits (121), Expect = 1e-60
 Identities = 166/182 (91%)
 Strand = Plus / Minus

                                                                         
Query: 19    gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78
             ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| 
Sbjct: 52302 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 52243

                                                                         
Query: 79    gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138
             ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 52242 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 52183

                                                                         
Query: 139   ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198
             |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 52182 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 52123

               
Query: 199   gt 200
             ||
Sbjct: 52122 gt 52121



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>dbj|AK067732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118J02, full
           insert sequence
          Length = 1970

 Score =  240 bits (121), Expect = 1e-60
 Identities = 166/182 (91%)
 Strand = Plus / Plus

                                                                       
Query: 19  gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78
           ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| 
Sbjct: 113 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 172

                                                                       
Query: 79  gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138
           ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 173 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 232

                                                                       
Query: 139 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198
           |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 233 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 292

             
Query: 199 gt 200
           ||
Sbjct: 293 gt 294



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>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1567_G09
          Length = 121388

 Score =  240 bits (121), Expect = 1e-60
 Identities = 166/182 (91%)
 Strand = Plus / Minus

                                                                        
Query: 19   gggaggaaggcgctggactacgaggagctcaacnagaacgtnaagaaggtgcagtacgcc 78
            ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| 
Sbjct: 4050 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 3991

                                                                        
Query: 79   gtgcgcggngagctctacctacgcgcatccgagctccagaaggagggcaagaggatcatc 138
            ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 3990 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 3931

                                                                        
Query: 139  ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 198
            |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 3930 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 3871

              
Query: 199  gt 200
            ||
Sbjct: 3870 gt 3869



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>dbj|AK060835.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C09, full
           insert sequence
          Length = 1581

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                       
Query: 138 cttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgcca 197
           ||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 1   cttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgcca 60

              
Query: 198 ggt 200
           |||
Sbjct: 61  ggt 63



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>gb|DQ118094.1| Vitis labrusca AlaT1 mRNA, complete cds
          Length = 1434

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 109 gagctccagaaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgccctc 168
           ||||| |||||||| || || | ||| || ||||| ||||| |||||||| || || || 
Sbjct: 94  gagcttcagaaggaagggaaaaagattattttcacaaacgtgggcaaccctcatgctcta 153

                                              
Query: 169 ggacagaagccactcaccttcccacgccaggtggt 203
           |||||||||||||| || || || |||||||||||
Sbjct: 154 ggacagaagccactgacttttcctcgccaggtggt 188



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>gb|U31975.1|CRU31975 Chlamydomonas reinhardtii alanine aminotransferase mRNA, complete
           cds
          Length = 2534

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 118 aaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgc 164
           ||||||||||||  |||||| ||||| |||||||| |||||||||||
Sbjct: 313 aaggagggcaaggagatcattttcacaaacgtcggaaacccgcacgc 359



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>gb|DQ118095.1| Vitis vinifera AlaT1 mRNA, complete cds
          Length = 1455

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 77/95 (81%)
 Strand = Plus / Plus

                                                                       
Query: 109 gagctccagaaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgccctc 168
           ||||| |||||||| || || | ||| || ||||| ||||| |||||||| || || || 
Sbjct: 94  gagcttcagaaggaagggaaaaagattattttcacaaacgtgggcaaccctcatgctcta 153

                                              
Query: 169 ggacagaagccactcaccttcccacgccaggtggt 203
           |||||||| ||||| || || || |||||||||||
Sbjct: 154 ggacagaaaccactgacttttcctcgccaggtggt 188



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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 144    caacgtcggcaacccgcacgccctc 168
              ||||| |||||||||||||||||||
Sbjct: 788135 caacgacggcaacccgcacgccctc 788159



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>emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 in linkage group 7,
           complete sequence
          Length = 79440

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ggagggcaagaggatcatct 139
           ||||||||||||||||||||
Sbjct: 736 ggagggcaagaggatcatct 717



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>ref|XM_681871.1| PREDICTED: Danio rerio similar to Nedd4-binding protein 1 (N4BP1)
           (LOC558641), partial mRNA
          Length = 458

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 ggagggcaagaggatcatct 139
           ||||||||||||||||||||
Sbjct: 216 ggagggcaagaggatcatct 235


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,149,571
Number of Sequences: 3902068
Number of extensions: 1149571
Number of successful extensions: 87074
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87010
Number of HSP's gapped (non-prelim): 64
length of query: 203
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 181
effective length of database: 17,147,199,772
effective search space: 3103643158732
effective search space used: 3103643158732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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