ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62k17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 ... 40 0.002
2TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member ... 40 0.002
3TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member ... 40 0.002
4TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member ... 40 0.002
5TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member ... 36 0.027
6TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member ... 36 0.027

>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 589

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +2

Query: 44  LWVNKVGPYNNPQETYNYH 100
           L+VNKVGPY+NPQETY+Y+
Sbjct: 44  LYVNKVGPYHNPQETYHYY 62



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>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 606

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +2

Query: 44  LWVNKVGPYNNPQETYNYH 100
           L+VNKVGPY+NPQETY+Y+
Sbjct: 44  LYVNKVGPYHNPQETYHYY 62



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>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 606

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +2

Query: 44  LWVNKVGPYNNPQETYNYH 100
           L+VNKVGPY+NPQETY+Y+
Sbjct: 44  LYVNKVGPYHNPQETYHYY 62



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>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor|
           (hMP70)
          Length = 606

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +2

Query: 44  LWVNKVGPYNNPQETYNYH 100
           L+VNKVGPY+NPQETY+Y+
Sbjct: 44  LYVNKVGPYHNPQETYHYY 62



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>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor|
           (SM-11044-binding protein) (EP70-P-iso)
          Length = 589

 Score = 36.2 bits (82), Expect = 0.027
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 44  LWVNKVGPYNNPQETYNYHS 103
           LW+N VGPY+N QETY Y S
Sbjct: 43  LWMNTVGPYHNRQETYKYFS 62



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>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor|
          Length = 587

 Score = 36.2 bits (82), Expect = 0.027
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 44  LWVNKVGPYNNPQETYNYHS 103
           LW+N VGPY+N QETY Y S
Sbjct: 41  LWMNTVGPYHNRQETYKYFS 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,526,362
Number of Sequences: 219361
Number of extensions: 69085
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 80,573,946
effective HSP length: 9
effective length of database: 78,599,697
effective search space used: 1886392728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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