ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62k16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
2dbj|AB042935.1| Oryza sativa (japonica cultivar-group) Os-RelA1 ... 232 1e-57
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 155 2e-34
4gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 155 2e-34
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome... 155 2e-34
7ref|NM_116459.2| Arabidopsis thaliana RSH1 (RELA-SPOT HOMOLOG); ... 58 4e-05
8ref|NM_202772.1| Arabidopsis thaliana RSH1 (RELA-SPOT HOMOLOG); ... 58 4e-05
9ref|NM_178956.2| Arabidopsis thaliana RSH1 (RELA-SPOT HOMOLOG); ... 58 4e-05
10emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c... 58 4e-05
11gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3 58 4e-05
12gb|AF225702.1|AF225702 Arabidopsis thaliana RSH1 mRNA, complete cds 58 4e-05
13emb|BX827213.1|CNS0A49R Arabidopsis thaliana Full-length cDNA Co... 46 0.13
14emb|AL136166.6| Human DNA sequence from clone RP11-36B23 on chro... 44 0.53
15gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Ca... 42 2.1
16gb|AC132486.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
17gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 8.3
18gb|AC166819.2| Mus musculus BAC clone RP24-492L15 from chromosom... 40 8.3
19emb|CR376724.12| Zebrafish DNA sequence from clone DKEY-174A16 i... 40 8.3
20gb|AC023141.6| Homo sapiens BAC clone RP11-548K12 from 7, comple... 40 8.3
21emb|AL603767.4| Human DNA sequence from clone RP11-430F18 on chr... 40 8.3
22emb|Y11931.1|NRY11931 N.rustica mRNA for 1-phosphatidylinositol-... 40 8.3
23gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Ca... 40 8.3
24gb|AE005888.1| Caulobacter crescentus CB15 section 214 of 359 of... 40 8.3
25gb|S72725.1| E2/NS1=envelope glycoprotein [hepatitis C virus HCV... 40 8.3
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
27emb|AL670238.5| Mouse DNA sequence from clone RP23-16J5 on chrom... 40 8.3
28gb|AY746817.1| Hepatitis C virus clone #19-9 polyprotein mRNA, p... 40 8.3
29gb|L19383.1|HPCFRM Hepatitis C virus gene, partial cds 40 8.3
30gb|L19376.1|HPCFRF Hepatitis C virus gene, partial cds 40 8.3 
>dbj|AK066679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072F16, full
           insert sequence
          Length = 3321

 Score =  232 bits (117), Expect = 1e-57
 Identities = 165/181 (91%)
 Strand = Plus / Plus

                                                                       
Query: 296 tttctccagaaacgttatgggagagtctcagaccagctatctcgtaccttcaacctgaag 355
           ||||||||||||| || ||||||  |||||  ||||||||||||||||||||||||||||
Sbjct: 635 tttctccagaaactttgtgggaggatctcaagccagctatctcgtaccttcaacctgaag 694

                                                                       
Query: 356 agttgaacttcgtacatgatgctttaaagttagcatatgaagcacataatgggcagaaac 415
           | |||||||| ||||| |||||| | ||||| |||||||| |||||||||||||||||||
Sbjct: 695 aattgaactttgtacacgatgctctgaagttggcatatgaggcacataatgggcagaaac 754

                                                                       
Query: 416 gccggagtggggaacctttcatcattcatcctgttgaagttgctcgtattcttggggagc 475
           |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 755 gccgaagtggggaacctttcattattcatcctgttgaagttgctcgtatccttggggagc 814

            
Query: 476 a 476
           |
Sbjct: 815 a 815



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 134 cgttactgcacatcacctggccagaagaaaccaacaaaggaaagttgggtcatggttcat 193
           ||||||||||||| |||||| ||||||  | |||||  || ||||| ||| |||||||||
Sbjct: 470 cgttactgcacataacctgggcagaaggcatcaacagggggaagtttggttatggttcat 529

               
Query: 194 cagc 197
           ||||
Sbjct: 530 cagc 533



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 583 gaacttgactgggaatcaattgctgc 608
           |||||||||||||||||||| |||||
Sbjct: 817 gaacttgactgggaatcaatagctgc 842



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 48/56 (85%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                   
Query: 25  gcgctcaccggcgcgcttgccagcactacc---cagtgctcctcctgtagccacgc 77
           |||||||| || ||||| |||||||| |||   |||||||||||||| ||||||||
Sbjct: 361 gcgctcacgggggcgctcgccagcaccaccgcgcagtgctcctcctgcagccacgc 416
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>dbj|AB042935.1| Oryza sativa (japonica cultivar-group) Os-RelA1 mRNA for
           chloroplast RelA homologue 1, complete cds
          Length = 3335

 Score =  232 bits (117), Expect = 1e-57
 Identities = 165/181 (91%)
 Strand = Plus / Plus

                                                                       
Query: 296 tttctccagaaacgttatgggagagtctcagaccagctatctcgtaccttcaacctgaag 355
           ||||||||||||| || ||||||  |||||  ||||||||||||||||||||||||||||
Sbjct: 633 tttctccagaaactttgtgggaggatctcaagccagctatctcgtaccttcaacctgaag 692

                                                                       
Query: 356 agttgaacttcgtacatgatgctttaaagttagcatatgaagcacataatgggcagaaac 415
           | |||||||| ||||| |||||| | ||||| |||||||| |||||||||||||||||||
Sbjct: 693 aattgaactttgtacacgatgctctgaagttggcatatgaggcacataatgggcagaaac 752

                                                                       
Query: 416 gccggagtggggaacctttcatcattcatcctgttgaagttgctcgtattcttggggagc 475
           |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 753 gccgaagtggggaacctttcattattcatcctgttgaagttgctcgtatccttggggagc 812

            
Query: 476 a 476
           |
Sbjct: 813 a 813



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 134 cgttactgcacatcacctggccagaagaaaccaacaaaggaaagttgggtcatggttcat 193
           ||||||||||||| |||||| ||||||  | |||||  || ||||| ||| |||||||||
Sbjct: 468 cgttactgcacataacctgggcagaaggcatcaacagggggaagtttggttatggttcat 527

               
Query: 194 cagc 197
           ||||
Sbjct: 528 cagc 531



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 583 gaacttgactgggaatcaattgctgc 608
           |||||||||||||||||||| |||||
Sbjct: 815 gaacttgactgggaatcaatagctgc 840



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 48/56 (85%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                   
Query: 25  gcgctcaccggcgcgcttgccagcactacc---cagtgctcctcctgtagccacgc 77
           |||||||| || ||||| |||||||| |||   |||||||||||||| ||||||||
Sbjct: 359 gcgctcacgggggcgctcgccagcaccaccgcgcagtgctcctcctgcagccacgc 414
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 96/102 (94%)
 Strand = Plus / Plus

                                                                            
Query: 383      agttagcatatgaagcacataatgggcagaaacgccggagtggggaacctttcatcattc 442
                |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 12673570 agttggcatatgaggcacataatgggcagaaacgccgaagtggggaacctttcattattc 12673629

                                                          
Query: 443      atcctgttgaagttgctcgtattcttggggagcacgtgagta 484
                |||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 12673630 atcctgttgaagttgctcgtatccttggggagcatgtgagta 12673671



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                   
Query: 328      ccagctatctcgtaccttcaacctgaagagttgaacttcgtacatgatgct 378
                ||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 12673393 ccagctatctcgtaccttcaacctgaagaattgaactttgtacacgatgct 12673443



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 570      tggacataactaggaacttgactgggaatcaattgctgc 608
                ||||||||  ||||||||||||||||||||||| |||||
Sbjct: 12673752 tggacatatttaggaacttgactgggaatcaatagctgc 12673790



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 135      gttactgcacatcacctggccagaagaaaccaacaaaggaaagttgggtcatggttcatc 194
                |||||||||||| |||||| ||||||  | |||||  || ||||| ||| ||||||||||
Sbjct: 12672700 gttactgcacataacctgggcagaaggcatcaacagggggaagtttggttatggttcatc 12672759

                   
Query: 195      agc 197
                |||
Sbjct: 12672760 agc 12672762



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 48/56 (85%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                        
Query: 25       gcgctcaccggcgcgcttgccagcactacc---cagtgctcctcctgtagccacgc 77
                |||||||| || ||||| |||||||| |||   |||||||||||||| ||||||||
Sbjct: 12670312 gcgctcacgggggcgctcgccagcaccaccgcgcagtgctcctcctgcagccacgc 12670367
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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score =  155 bits (78), Expect = 2e-34
 Identities = 96/102 (94%)
 Strand = Plus / Minus

                                                                        
Query: 383  agttagcatatgaagcacataatgggcagaaacgccggagtggggaacctttcatcattc 442
            |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 3419 agttggcatatgaggcacataatgggcagaaacgccgaagtggggaacctttcattattc 3360

                                                      
Query: 443  atcctgttgaagttgctcgtattcttggggagcacgtgagta 484
            |||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 3359 atcctgttgaagttgctcgtatccttggggagcatgtgagta 3318



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                               
Query: 328  ccagctatctcgtaccttcaacctgaagagttgaacttcgtacatgatgct 378
            ||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 3596 ccagctatctcgtaccttcaacctgaagaattgaactttgtacacgatgct 3546



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 570  tggacataactaggaacttgactgggaatcaattgctgc 608
            ||||||||  ||||||||||||||||||||||| |||||
Sbjct: 3237 tggacatatttaggaacttgactgggaatcaatagctgc 3199



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 135  gttactgcacatcacctggccagaagaaaccaacaaaggaaagttgggtcatggttcatc 194
            |||||||||||| |||||| ||||||  | |||||  || ||||| ||| ||||||||||
Sbjct: 4289 gttactgcacataacctgggcagaaggcatcaacagggggaagtttggttatggttcatc 4230

               
Query: 195  agc 197
            |||
Sbjct: 4229 agc 4227



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 48/56 (85%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                    
Query: 25   gcgctcaccggcgcgcttgccagcactacc---cagtgctcctcctgtagccacgc 77
            |||||||| || ||||| |||||||| |||   |||||||||||||| ||||||||
Sbjct: 6677 gcgctcacgggggcgctcgccagcaccaccgcgcagtgctcctcctgcagccacgc 6622
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  155 bits (78), Expect = 2e-34
 Identities = 96/102 (94%)
 Strand = Plus / Plus

                                                                            
Query: 383      agttagcatatgaagcacataatgggcagaaacgccggagtggggaacctttcatcattc 442
                |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 12670333 agttggcatatgaggcacataatgggcagaaacgccgaagtggggaacctttcattattc 12670392

                                                          
Query: 443      atcctgttgaagttgctcgtattcttggggagcacgtgagta 484
                |||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 12670393 atcctgttgaagttgctcgtatccttggggagcatgtgagta 12670434



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                   
Query: 328      ccagctatctcgtaccttcaacctgaagagttgaacttcgtacatgatgct 378
                ||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 12670156 ccagctatctcgtaccttcaacctgaagaattgaactttgtacacgatgct 12670206



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 570      tggacataactaggaacttgactgggaatcaattgctgc 608
                ||||||||  ||||||||||||||||||||||| |||||
Sbjct: 12670515 tggacatatttaggaacttgactgggaatcaatagctgc 12670553



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 135      gttactgcacatcacctggccagaagaaaccaacaaaggaaagttgggtcatggttcatc 194
                |||||||||||| |||||| ||||||  | |||||  || ||||| ||| ||||||||||
Sbjct: 12669463 gttactgcacataacctgggcagaaggcatcaacagggggaagtttggttatggttcatc 12669522

                   
Query: 195      agc 197
                |||
Sbjct: 12669523 agc 12669525



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 48/56 (85%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                        
Query: 25       gcgctcaccggcgcgcttgccagcactacc---cagtgctcctcctgtagccacgc 77
                |||||||| || ||||| |||||||| |||   |||||||||||||| ||||||||
Sbjct: 12667075 gcgctcacgggggcgctcgccagcaccaccgcgcagtgctcctcctgcagccacgc 12667130
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>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0050D18, complete sequence
          Length = 126350

 Score =  155 bits (78), Expect = 2e-34
 Identities = 96/102 (94%)
 Strand = Plus / Plus

                                                                         
Query: 383   agttagcatatgaagcacataatgggcagaaacgccggagtggggaacctttcatcattc 442
             |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 28023 agttggcatatgaggcacataatgggcagaaacgccgaagtggggaacctttcattattc 28082

                                                       
Query: 443   atcctgttgaagttgctcgtattcttggggagcacgtgagta 484
             |||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 28083 atcctgttgaagttgctcgtatccttggggagcatgtgagta 28124



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                
Query: 328   ccagctatctcgtaccttcaacctgaagagttgaacttcgtacatgatgct 378
             ||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 27846 ccagctatctcgtaccttcaacctgaagaattgaactttgtacacgatgct 27896



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 570   tggacataactaggaacttgactgggaatcaattgctgc 608
             ||||||||  ||||||||||||||||||||||| |||||
Sbjct: 28205 tggacatatttaggaacttgactgggaatcaatagctgc 28243



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                         
Query: 135   gttactgcacatcacctggccagaagaaaccaacaaaggaaagttgggtcatggttcatc 194
             |||||||||||| |||||| ||||||  | |||||  || ||||| ||| ||||||||||
Sbjct: 27153 gttactgcacataacctgggcagaaggcatcaacagggggaagtttggttatggttcatc 27212

                
Query: 195   agc 197
             |||
Sbjct: 27213 agc 27215



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 48/56 (85%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                     
Query: 25    gcgctcaccggcgcgcttgccagcactacc---cagtgctcctcctgtagccacgc 77
             |||||||| || ||||| |||||||| |||   |||||||||||||| ||||||||
Sbjct: 24765 gcgctcacgggggcgctcgccagcaccaccgcgcagtgctcctcctgcagccacgc 24820
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>ref|NM_116459.2| Arabidopsis thaliana RSH1 (RELA-SPOT HOMOLOG); ATP binding /
           catalytic AT4G02260 (RSH1) transcript variant
           AT4G02260.2 mRNA, complete cds
          Length = 3186

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 421 agtggggaacctttcatcattcatcctgttgaagttgctcgtattcttgggga 473
           ||||||||||| ||||| || ||||| |||| |||||||||||| ||||||||
Sbjct: 720 agtggggaaccattcattatacatcccgttgcagttgctcgtatccttgggga 772
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>ref|NM_202772.1| Arabidopsis thaliana RSH1 (RELA-SPOT HOMOLOG); ATP binding /
           catalytic AT4G02260 (RSH1) transcript variant
           AT4G02260.3 mRNA, complete cds
          Length = 3272

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 421 agtggggaacctttcatcattcatcctgttgaagttgctcgtattcttgggga 473
           ||||||||||| ||||| || ||||| |||| |||||||||||| ||||||||
Sbjct: 720 agtggggaaccattcattatacatcccgttgcagttgctcgtatccttgggga 772
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>ref|NM_178956.2| Arabidopsis thaliana RSH1 (RELA-SPOT HOMOLOG); ATP binding /
           catalytic AT4G02260 (RSH1) transcript variant
           AT4G02260.1 mRNA, complete cds
          Length = 3189

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 421 agtggggaacctttcatcattcatcctgttgaagttgctcgtattcttgggga 473
           ||||||||||| ||||| || ||||| |||| |||||||||||| ||||||||
Sbjct: 720 agtggggaaccattcattatacatcccgttgcagttgctcgtatccttgggga 772
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>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 421   agtggggaacctttcatcattcatcctgttgaagttgctcgtattcttgggga 473
             ||||||||||| ||||| || ||||| |||| |||||||||||| ||||||||
Sbjct: 22651 agtggggaaccattcattatacatcccgttgcagttgctcgtatccttgggga 22703
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>gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3
          Length = 48689

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 421   agtggggaacctttcatcattcatcctgttgaagttgctcgtattcttgggga 473
             ||||||||||| ||||| || ||||| |||| |||||||||||| ||||||||
Sbjct: 29627 agtggggaaccattcattatacatcccgttgcagttgctcgtatccttgggga 29575
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>gb|AF225702.1|AF225702 Arabidopsis thaliana RSH1 mRNA, complete cds
          Length = 3137

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 421 agtggggaacctttcatcattcatcctgttgaagttgctcgtattcttgggga 473
           ||||||||||| ||||| || ||||| |||| |||||||||||| ||||||||
Sbjct: 674 agtggggaaccattcattatacatcccgttgcagttgctcgtatccttgggga 726
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>emb|BX827213.1|CNS0A49R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS22ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 3148

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 423 tggggaacctttcatcattcatcctgttgaagttgctcgtattcttgggga 473
           ||||| ||| ||||| || ||||| |||| |||||||||||| ||||||||
Sbjct: 714 tgggggaccattcattatacatcccgttgcagttgctcgtatccttgggga 764
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>emb|AL136166.6| Human DNA sequence from clone RP11-36B23 on chromosome X Contains
            part of a novel gene, complete sequence
          Length = 102105

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 154  ccagaagaaaccaacaaaggaa 175
            ||||||||||||||||||||||
Sbjct: 6389 ccagaagaaaccaacaaaggaa 6368
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>gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 176338

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   tgggtcatggttcatcagcta 199
             |||||||||||||||||||||
Sbjct: 95963 tgggtcatggttcatcagcta 95983
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>gb|AC132486.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0473H02,
              complete sequence
          Length = 141027

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    taccttcaacctgaagagtt 359
              ||||||||||||||||||||
Sbjct: 111506 taccttcaacctgaagagtt 111525
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>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV,
              complete sequence
          Length = 202301

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    gttcgaccttgtttctccag 304
              ||||||||||||||||||||
Sbjct: 175669 gttcgaccttgtttctccag 175650
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>gb|AC166819.2| Mus musculus BAC clone RP24-492L15 from chromosome 6, complete sequence
          Length = 199206

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    cagaagaaaccaacaaagga 174
              ||||||||||||||||||||
Sbjct: 125621 cagaagaaaccaacaaagga 125602
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>emb|CR376724.12| Zebrafish DNA sequence from clone DKEY-174A16 in linkage group 3,
             complete sequence
          Length = 168199

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   tgatgctttaaagttagcat 391
             ||||||||||||||||||||
Sbjct: 94496 tgatgctttaaagttagcat 94477
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>gb|AC023141.6| Homo sapiens BAC clone RP11-548K12 from 7, complete sequence
          Length = 197637

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   attgaaactgtaatgacata 514
             ||||||||||||||||||||
Sbjct: 11038 attgaaactgtaatgacata 11019
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>emb|AL603767.4| Human DNA sequence from clone RP11-430F18 on chromosome 6, complete
             sequence
          Length = 95877

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aagaaaccaacaaaggaaag 177
             ||||||||||||||||||||
Sbjct: 43603 aagaaaccaacaaaggaaag 43584
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>emb|Y11931.1|NRY11931 N.rustica mRNA for 1-phosphatidylinositol-4,5-bisphosphate
           phosphodiesterase
          Length = 2013

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 585 acttgactgggaatcaattg 604
           ||||||||||||||||||||
Sbjct: 417 acttgactgggaatcaattg 436
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>gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162313

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    actaggaacttgactgggaa 597
              ||||||||||||||||||||
Sbjct: 107479 actaggaacttgactgggaa 107498
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>gb|AE005888.1| Caulobacter crescentus CB15 section 214 of 359 of the complete genome
          Length = 12494

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 16   gctccacgcgcgctcaccggcgcg 39
            |||||| |||||||||||||||||
Sbjct: 2892 gctccaggcgcgctcaccggcgcg 2869
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>gb|S72725.1| E2/NS1=envelope glycoprotein [hepatitis C virus HCV,
           agammaglobulinemic patient isolate, Genomic RNA, 441 nt]
          Length = 441

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 caacctgaagagttgaactt 365
           ||||||||||||||||||||
Sbjct: 266 caacctgaagagttgaactt 247
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 340     taccttcaacctgaagagtt 359
               ||||||||||||||||||||
Sbjct: 5789132 taccttcaacctgaagagtt 5789151
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>emb|AL670238.5| Mouse DNA sequence from clone RP23-16J5 on chromosome X, complete
              sequence
          Length = 223392

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    tgagtagtagtatatcattg 498
              ||||||||||||||||||||
Sbjct: 126379 tgagtagtagtatatcattg 126360
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>gb|AY746817.1| Hepatitis C virus clone #19-9 polyprotein mRNA, partial cds
          Length = 1280

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 caacctgaagagttgaactt 365
           ||||||||||||||||||||
Sbjct: 782 caacctgaagagttgaactt 763
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>gb|L19383.1|HPCFRM Hepatitis C virus gene, partial cds
          Length = 369

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 caacctgaagagttgaactt 365
           ||||||||||||||||||||
Sbjct: 251 caacctgaagagttgaactt 232
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>gb|L19376.1|HPCFRF Hepatitis C virus gene, partial cds
          Length = 414

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 caacctgaagagttgaactt 365
           ||||||||||||||||||||
Sbjct: 251 caacctgaagagttgaactt 232


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,928,558
Number of Sequences: 3902068
Number of extensions: 4928558
Number of successful extensions: 145364
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145225
Number of HSP's gapped (non-prelim): 139
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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