ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BTNL3_HUMAN (Q6UXE8) Butyrophilin-like protein 3 precursor (Buty... 32 2.1
2BTNL8_HUMAN (Q6UX41) Butyrophilin-like protein 8 precursor 32 2.1
3HPLN4_HUMAN (Q86UW8) Hyaluronan and proteoglycan link protein 4 ... 31 3.6
4HPLN4_MOUSE (Q80WM4) Hyaluronan and proteoglycan link protein 4 ... 31 3.6
5Y183_TREPA (O83213) Hypothetical protein TP0183 precursor 30 4.8
6Y184_MYCGE (Q49400) Hypothetical adenine-specific methylase MG18... 30 8.1

>BTNL3_HUMAN (Q6UXE8) Butyrophilin-like protein 3 precursor (Butyrophilin-like|
           receptor)
          Length = 466

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 86  SLDPEALHPELLLRPLSAKSLPPHRRAPRDASPSDERY 199
           +LDPE  HP+L +  L   +   HR+AP++   S++R+
Sbjct: 291 TLDPETAHPKLCVSDLKTVT---HRKAPQEVPHSEKRF 325



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>BTNL8_HUMAN (Q6UX41) Butyrophilin-like protein 8 precursor|
          Length = 500

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 86  SLDPEALHPELLLRPLSAKSLPPHRRAPRDASPSDERY 199
           +LDPE  HP+L +  L   +   HR+AP++   S++R+
Sbjct: 291 TLDPETAHPKLCVSDLKTVT---HRKAPQEVPHSEKRF 325



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>HPLN4_HUMAN (Q86UW8) Hyaluronan and proteoglycan link protein 4 precursor|
           (Brain link protein 2)
          Length = 402

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 187 RGRCISGRSSVRWQTLGTQRPEEKL-GVECFRVEGSPNQASGDW 59
           R RC   R  VR  +LG      +L GV C+R  G+P+ A G W
Sbjct: 336 RARCGGRRPGVR--SLGFPDATRRLFGVYCYRAPGAPDPAPGGW 377



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>HPLN4_MOUSE (Q80WM4) Hyaluronan and proteoglycan link protein 4 precursor|
           (Brain link protein 2) (Link protein 4)
          Length = 400

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -2

Query: 187 RGRCISGRSSVRWQTLGTQRPEEKL-GVECFRVEGSPNQASGDWLAAVAA----EAPKRN 23
           R RC   R  VR  +LG      +L GV C+R  G+P+ A G W    A         R+
Sbjct: 334 RTRCGGPRPGVR--SLGFPDASRRLFGVYCYRAPGAPDPAPGGWGWGWAGGGGWAGGSRD 391

Query: 22  PSGW 11
           P+ W
Sbjct: 392 PAAW 395



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>Y183_TREPA (O83213) Hypothetical protein TP0183 precursor|
          Length = 281

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = -1

Query: 278 AAKCSKRVRKLVESVVKLSSPAA------DACRSARQREMHLGALVGAVADSWHSTAGGE 117
           AA+     R LV  V   S P         + R  R  E  + +L  A+A SWHST  GE
Sbjct: 118 AARILLDSRHLVRDVFDRSVPLTGNQTETSSMRHTRAGEESVSSL-DALAGSWHSTEEGE 176

Query: 116 ARGGVLQGRGI 84
               V +GRGI
Sbjct: 177 RIVIVSEGRGI 187



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>Y184_MYCGE (Q49400) Hypothetical adenine-specific methylase MG184 (EC|
           2.1.1.72) (M.MgeORF184P)
          Length = 317

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
 Frame = -2

Query: 184 GRCISGRSSVRWQT-LGTQRPEEKLGVECFRVEGSPNQASGDWLAAVAAEAPKRNPSGW 11
           G+C    + + W T LG       L   CF      N    DW  A+     K  P  W
Sbjct: 192 GKCFQKIAGISWFTNLGKPHYNPFLNTNCFYKNNEKNYPKFDWYDAIYVNKIKNIPMDW 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,308,032
Number of Sequences: 219361
Number of extensions: 1768469
Number of successful extensions: 5419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5399
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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