ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62k05 |
|---|---|
| Clone Library Name | barley_pub |
>MGAT3_RAT (Q02527) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 538 Score = 70.9 bits (172), Expect = 3e-12 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Frame = +1 Query: 181 RETPRRVFDAVLFSNELDILELRWNELSPYVSEFVLLESNSTFTGVIKPLFFKE--NRHR 354 RE PRRV +A+ ++E D+L++R++EL V FV+ ESN T G +PL F+E Sbjct: 206 REVPRRVINAININHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGT 265 Query: 355 FRFAESRLTYGTYGGRFMKG--ENPFVEESYQRVAL--DQLLRIARIEDDDILIMSDVDE 522 F + ++ Y + F G ++ ++ + Y R L D + R+ + DD+ I+ D DE Sbjct: 266 FEYIRHKVLY-VFLDHFPPGGRQDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDDADE 324 Query: 523 IPSGHTINLLRWCD 564 IP+ + L+ D Sbjct: 325 IPARDGVLFLKLYD 338
>MGAT3_HUMAN (Q09327) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 533 Score = 70.5 bits (171), Expect = 3e-12 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Frame = +1 Query: 181 RETPRRVFDAVLFSNELDILELRWNELSPYVSEFVLLESNSTFTGVIKPLFFKE--NRHR 354 RE PRRV +A+ ++E D+L++R++EL V FV+ ESN T G +PL F+E Sbjct: 202 REVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGT 261 Query: 355 FRFAESRLTYGTYGGRFMKG--ENPFVEESYQRVAL--DQLLRIARIEDDDILIMSDVDE 522 F + ++ Y + F G ++ ++ + Y R L D + R+ + DD+ I+ D DE Sbjct: 262 FEYIRHKVLY-VFLDHFPPGGRQDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDDADE 320 Query: 523 IPSGHTINLLRWCD 564 IP+ + L+ D Sbjct: 321 IPARDGVLFLKLYD 334
>MGAT3_MOUSE (Q10470) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 538 Score = 69.7 bits (169), Expect = 6e-12 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Frame = +1 Query: 181 RETPRRVFDAVLFSNELDILELRWNELSPYVSEFVLLESNSTFTGVIKPLFFKE--NRHR 354 RE PRRV +A+ ++E D+L++R++EL V FV+ +SN T G +PL F+E Sbjct: 206 REVPRRVINAININHEFDLLDVRFHELGDVVDAFVVCDSNFTAYGEPRPLKFREMLTNGT 265 Query: 355 FRFAESRLTYGTYGGRFMKG--ENPFVEESYQRVAL--DQLLRIARIEDDDILIMSDVDE 522 F + ++ Y + F G ++ ++ + Y R L D + R+ + DD+ I+ D DE Sbjct: 266 FEYIRHKVLY-VFLDHFPPGGRQDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDDADE 324 Query: 523 IPSGHTINLLRWCD 564 IP+ + L+ D Sbjct: 325 IPARDGVLFLKLYD 338
>TOLB_RHILO (Q98F84) Protein tolB precursor| Length = 436 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +2 Query: 116 SLTTTMRMSPWRTSASYMGGKSGRPHAVFSMLCSSVMSLISLNFVGMNSAP 268 S+ T R SP R +YM +SG+P + + L+ NF GM AP Sbjct: 205 SIVLTPRFSPNRQEITYMSYESGQPRVYLLQIETGQRELVG-NFPGMTFAP 254
>DIPZ_MYCTU (Q10801) Protein dipZ| Length = 695 Score = 30.8 bits (68), Expect = 2.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 565 RRTISRD*WCGHLGFHQHLT 506 RR + R WCG G+H HLT Sbjct: 57 RRRLRRRRWCGRCGYHSHLT 76
>DIPZ_MYCBO (P59960) Protein dipZ| Length = 695 Score = 30.8 bits (68), Expect = 2.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 565 RRTISRD*WCGHLGFHQHLT 506 RR + R WCG G+H HLT Sbjct: 57 RRRLRRRRWCGRCGYHSHLT 76
>ARSA_METTH (O27555) Putative arsenical pump-driving ATPase (EC 3.6.3.16)| (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) Length = 324 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +1 Query: 406 MKGENPFVEESYQRVALDQLLRIARIEDDDILIMSDVDEIPSGHTINLL 552 M +P ++E+ A DQ LR ++ DI+I D P+GHT+ LL Sbjct: 114 MASMSPGIDEA---AAFDQFLRYMTTDEYDIVIF---DTAPTGHTLRLL 156
>Y1654_METJA (Q59048) Hypothetical protein MJ1654| Length = 225 Score = 30.0 bits (66), Expect = 4.9 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 8/101 (7%) Frame = +1 Query: 1 VALFIGVPLVMLIIYKHGQKVTYFLRPIWESPPEPFKIIPHYYNENVTMENLCKLHGWKV 180 + L + P+ + +IYK G+K+ Y +KI P + N ++N + G KV Sbjct: 7 IKLGLSAPINVPLIYKTGEKMRYV----------AYKIYPEEFLNNEVVDNALIIEGRKV 56 Query: 181 RETPRRVFDAV-------LFSNELDILELRWNELSP-YVSE 279 R R+ V + S +D + +R+ E P Y+ E Sbjct: 57 RRV--RILGKVENINVGNIISFYVDGVNVRYFEEKPVYIEE 95
>TOLB_BRUSU (Q8FZ07) Protein tolB precursor| Length = 443 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +2 Query: 116 SLTTTMRMSPWRTSASYMGGKSGRPHAVFSMLCSSVMSLISLNFVGMNSAP 268 +L+ T R SP R +YM + G P L + L+ NF GM AP Sbjct: 210 ALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVG-NFPGMTIAP 259
>TOLB_BRUME (Q93TG4) Protein tolB precursor| Length = 443 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +2 Query: 116 SLTTTMRMSPWRTSASYMGGKSGRPHAVFSMLCSSVMSLISLNFVGMNSAP 268 +L+ T R SP R +YM + G P L + L+ NF GM AP Sbjct: 210 ALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQRELVG-NFPGMTIAP 259
>YJGL_ECOLI (P39336) Hypothetical protein yjgL| Length = 604 Score = 29.6 bits (65), Expect = 6.4 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = +1 Query: 175 KVRETPRRVFDAVLFSNELDILELRWNELSPYVSEFVLLESNSTFTGVIKPLF 333 K+ ET D + N ++ L WN+L YV+EF L SN T +I+ LF Sbjct: 418 KIAETLFFNLDKEPYKNSPELQGLIWNKLVVYVNEFNL--SNREKTNLIQRLF 468
>DMRT1_CHICK (Q9PTQ7) Doublesex- and mab-3-related transcription factor 1| (Fragment) Length = 311 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Frame = +2 Query: 68 TSSGQSGNLRPSPSR*SLTTTMRMSPWRTSASYMGGKSGRPHAVFSMLCSSVMSLISLNF 247 + SG+ ++ +R ++++ RM + SY+G G P V +L S S + Sbjct: 205 SQSGKQWQMKGMENRHAMSSQYRMCSYYPPTSYLGQGVGSPTCVTQILASEDTPSYSESK 264 Query: 248 VGMNSAPMCQSS--SCLSPTQ 304 + S P Q S CLS ++ Sbjct: 265 ARVFSPPSSQDSGLGCLSSSE 285
>SYK_BLOFL (Q7VRF5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 485 Score = 29.3 bits (64), Expect = 8.4 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Frame = +1 Query: 247 RWNELSPYVS-EFVLLESNSTFTGVIKPLFFKENRHRFR----FAESRLTYGTYGGRFMK 411 R +SPY + EF ++E + + F + R +S + YG Y F Sbjct: 239 RNESISPYHNPEFTMMEIYEAYVDYNNMIIFVQELFRTLTERILRKSVIEYGDYSLDF-- 296 Query: 412 GENPFVEESYQRVALDQLLRIARIEDDDILIMSDV 516 E PF++ S + + L I DDIL++ D+ Sbjct: 297 -EKPFIKMSIKEAIMYYLPDIRTKNIDDILVVFDI 330
>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1008 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 8/42 (19%) Frame = +1 Query: 220 SNELDILELRWNELS--------PYVSEFVLLESNSTFTGVI 321 SNEL +L+L WN L+ + + F L SN++FTG I Sbjct: 438 SNELQLLDLSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEI 479 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,633,136 Number of Sequences: 219361 Number of extensions: 1972139 Number of successful extensions: 4874 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4725 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4868 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
