ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62j20 |
|---|---|
| Clone Library Name | barley_pub |
>BCHH_RHOS4 (Q9RFD5) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1193 Score = 111 bits (277), Expect = 1e-24 Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 1/165 (0%) Frame = +3 Query: 36 PVLFLDTGIWHPLAPTMYDDVKEYLNWYGTRRDANDRLKNPEAPV-IGLVLQRSHIVTGD 212 P+ + + G++HP P D ND + A V +GL++ RS+I+ D Sbjct: 213 PIEYPEVGLYHPSLPDRITT------------DPNDLPRPAGAKVTVGLLMLRSYILASD 260 Query: 213 DGHYVAVIMELEARGAKVIPIFAGGLDFSGPIERYLVDPITKKPFVNAVVSLTGFALVGG 392 HY AVI E +G V+P FAGGLD I+ Y D + ++A+VSLTGF+LVGG Sbjct: 261 TAHYDAVIEAFERKGIAVLPAFAGGLDGRPAIDAYFHDKLGTT--IDAMVSLTGFSLVGG 318 Query: 393 PARQDHPKAIASLMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQ 527 PA D AI +L LDVPYI A PL FQT +W + GL P++ Sbjct: 319 PAYNDSHAAIEALKGLDVPYIAAHPLEFQTLGQWAQAGGGLGPVE 363
>BCHH_RHOCA (P26162) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1194 Score = 108 bits (270), Expect = 9e-24 Identities = 66/166 (39%), Positives = 91/166 (54%), Gaps = 2/166 (1%) Frame = +3 Query: 36 PVLFLDTGIWHPLAPTMYDDVKEYLNWYGTRRDANDRLKNPEAPV--IGLVLQRSHIVTG 209 P+ + + G++HP P G +L P PV IG+++ RS+I+ Sbjct: 219 PIDYPEVGLYHPDMP-------------GRITTDPAKLPQPANPVATIGILMLRSYILAK 265 Query: 210 DDGHYVAVIMELEARGAKVIPIFAGGLDFSGPIERYLVDPITKKPFVNAVVSLTGFALVG 389 D HY AVI EL+A G V+P FAGGLD IE +L I + ++SL+GF+LVG Sbjct: 266 DTAHYDAVIRELQAHGVAVLPAFAGGLDGRPAIEEFLHGKI------DTLLSLSGFSLVG 319 Query: 390 GPARQDHPKAIASLMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQ 527 GPA D A+ +L LDVPY+ A PL FQT +W S GL P++ Sbjct: 320 GPAYNDSDAAVETLKALDVPYVTAQPLEFQTLGQWRASGGGLGPVE 365
>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1279 Score = 69.7 bits (169), Expect = 5e-12 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 5/162 (3%) Frame = +3 Query: 57 GIWHPLAPTMYDDVKEYLNWYGTRRDANDRLKNPEAPVIGLVLQRSHIVTGDDGHYVAVI 236 G++HP A + DVK + +W R D+ + + L+ R H++ + + I Sbjct: 210 GLYHPDAKEYFKDVKSFKSWSKKRGVNFDKSQK-----MALLFFRKHLLQ-EKTYIDNTI 263 Query: 237 MELEARGAKVIPIFAGGLDFSGPIERYLVDPITKKPFVNAVVSLTGFALVGGPARQDHPK 416 LE G V P F G++ + +L+ K ++ +V++ GF LVGGPA P Sbjct: 264 RTLEKHGVNVFPAFVMGVEGHVLVRDWLM-----KEKIDLLVNMMGFGLVGGPAGSTKPG 318 Query: 417 AIAS-----LMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQ 527 A L LDVPY+VA PL+ Q E W LG+ P+Q Sbjct: 319 TAADARHEILTGLDVPYMVAQPLLVQDFESW--HELGVSPMQ 358
>COBN_PSEDE (P29929) Aerobic cobaltochelatase cobN subunit (EC 6.6.1.2)| (Hydrogenobyrinic acid a,c-diamide cobaltochelatase cobN subunit) Length = 1275 Score = 40.8 bits (94), Expect = 0.002 Identities = 34/127 (26%), Positives = 55/127 (43%) Frame = +3 Query: 48 LDTGIWHPLAPTMYDDVKEYLNWYGTRRDANDRLKNPEAPVIGLVLQRSHIVTGDDGHYV 227 L GIW P A + V E+ + R A + E P +G+ R+ + +G+ Sbjct: 173 LKAGIWWPGAGVI--GVSEWQSLVQGRMVAREGF---EPPTVGICFYRALVQSGETRPVE 227 Query: 228 AVIMELEARGAKVIPIFAGGLDFSGPIERYLVDPITKKPFVNAVVSLTGFALVGGPARQD 407 A+I LEA G + +P+F L + + I + + V++ TGFA V P Sbjct: 228 ALIDALEAEGVRALPVFVSSL--KDAVSVGTLQAIFSEAAPDVVMNATGFA-VSSPGADR 284 Query: 408 HPKAIAS 428 P + S Sbjct: 285 QPTVLES 291
>Y908_METJA (Q58318) Hypothetical protein MJ0908| Length = 1232 Score = 38.1 bits (87), Expect = 0.015 Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 7/176 (3%) Frame = +3 Query: 18 DIRYNDPVLFLDTGIWHPLAPTMYDDVKEYLNWYGTRRDANDRLKNPEAPVIGLVLQRSH 197 ++ Y +P GI++ ++ + +YLN+ + ++ + P+IG++ R+ Sbjct: 142 NVEYEEPRPMPWQGIYYK--GKYFETLDDYLNYL------KELGRDLDKPIIGVLFYRNW 193 Query: 198 IVTGDDGHYVAVIMELEARGAKVIPIFA-------GGLDFSGPIERYLVDPITKKPFVNA 356 V + + +I +E +GA I +F+ G + +R+ KP V+A Sbjct: 194 FVANNIDYVNDLIDIIENKGAIPIAVFSSHLKNELGSIGTLETFKRFFYK--DGKPIVHA 251 Query: 357 VVSLTGFALVGGPARQDHPKAIASLMKLDVPYIVALPLVFQTTEEWLNSTLGLHPI 524 +++ T F L G + L +L+VP + + + E+W S GL+PI Sbjct: 252 LINTTMFTLSMGVKAELLKDEPEFLKELNVPILQGI-ISTGFIEDWKKSVSGLNPI 306
>MRE11_METTH (O26641) DNA double-strand break repair protein mre11| Length = 587 Score = 37.7 bits (86), Expect = 0.020 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = -2 Query: 455 DVRHVELHQRGDGLGVVLPGRPTDEREPGERHHGVHKRLLGDGVDQVALDGAGE 294 D+R+ L + GD + V L R +E+ PGE KR++ D D + LD G+ Sbjct: 532 DIRNRRLMEEGDSIAVELLRRLENEKAPGENKSEYEKRIIEDAGDVLGLDLGGD 585
>Y1441_METJA (Q58836) Hypothetical protein MJ1441| Length = 1226 Score = 37.7 bits (86), Expect = 0.020 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 10/125 (8%) Frame = +3 Query: 171 IGLVLQRSHIVTGDDGHYVAVIMELEARGAKVIPIFAGG--------LDFSGPIERYLVD 326 +G++ R H + DD + ++ + VIP+F+ G L + +Y + Sbjct: 153 VGILFSR-HYLVNDDMDVIEKLLNRLDKEFNVIPVFSYGAKCEDLNALGSGESVLKYFLK 211 Query: 327 PITKKPFVNAVVSLTGFAL--VGGPARQDHPKAIASLMKLDVPYIVALPLVFQTTEEWLN 500 KP ++A+++L F L V A + + L KLDVP + +++ E+W Sbjct: 212 D--DKPIIDALINLLSFPLGTVKDKANLNKISGVEILKKLDVPVFHPIMSYYKSYEDWKK 269 Query: 501 STLGL 515 GL Sbjct: 270 DEQGL 274
>TRPA_METAC (Q8TLP4) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 272 Score = 32.7 bits (73), Expect = 0.63 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = -2 Query: 488 LRGLEHERQRDDVRHVELHQRGDG--LGVVLPGRPTDEREPGERHHGVHKRLLGDGVDQV 315 LR EH RQ+ + EL Q+ +G +G V+ G P+ E G+ K L+ G D + Sbjct: 5 LRATEHGRQKISEKFDELKQKKEGALIGYVMAGDPS-----AEATFGIVKALVNGGADII 59 Query: 314 ALDGAGEVEPAGEDGDDLGASG 249 L G +P DG + A+G Sbjct: 60 EL-GFPFSDPVA-DGPTIQAAG 79
>EFG2_DESPS (Q6AP74) Elongation factor G 2 (EF-G 2)| Length = 692 Score = 32.0 bits (71), Expect = 1.1 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 19/100 (19%) Frame = +3 Query: 183 LQRSHIV-------TGDDGHYVAVIMELEA--RGA----------KVIPIFAGGLDFSGP 305 +QRSH TG + V++E+E RGA K IP +F G Sbjct: 485 IQRSHSAEGLFEQPTGSSNQFAKVVLEIEPLERGAGIEFVCEVDEKQIPA-----EFLGA 539 Query: 306 IERYLVDPITKKPFVNAVVSLTGFALVGGPARQDHPKAIA 425 +ER +VD + P V V+ LVGG ++ +A Sbjct: 540 VERGVVDSLDSGPLVGYPVTDVRVRLVGGAYHEEDSTEMA 579
>ZBT7A_RAT (Q9QZ48) Zinc finger and BTB domain-containing protein 7A| (Leukemia/lymphoma-related factor) (Osteoclast-derived zinc finger protein) Length = 569 Score = 31.2 bits (69), Expect = 1.8 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = -2 Query: 401 PGRPTDEREPGERHHGVHKRLLGDGVDQVALDGAGEVEPAGEDGDDLGASG 249 PG P R E+H + D ++ +LDG G + AG GDD GA G Sbjct: 512 PGLPDAPRNGQEKHFKDEE----DDEEEASLDGLGRLNVAGSGGDD-GAGG 557
>YGX6_YEAST (P53077) Hypothetical 14.5 kDa protein in OST5-GOG5 intergenic| region Length = 123 Score = 30.4 bits (67), Expect = 3.1 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +3 Query: 27 YNDPVLFLD--TGIWHPLAPTMYDDVKEYLNW 116 Y PV+ + T +W L P + D++KEYL W Sbjct: 18 YQPPVVEITNITKLWPTLRPEVRDEIKEYLRW 49
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 30.0 bits (66), Expect = 4.1 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 21/122 (17%) Frame = -3 Query: 502 LLSHSSVVWNTSGSAT----MYGTSSFINEAM-----------ALGWSCLAGPPTSANPV 368 L S +S TS SAT Y TSS + + S + P TS N Sbjct: 255 LTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNST 314 Query: 367 SDTTAFTNGFLVMGSTR*RSMGPEKSSPPAKMGMTLA------PLASSSMMTAT*CPSSP 206 + T+A + + S + S+P + + T A PL S + TAT S+P Sbjct: 315 TTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTP 374 Query: 205 VT 200 +T Sbjct: 375 LT 376
>MUC1_MESAU (Q60528) Mucin-1 precursor| Length = 676 Score = 29.6 bits (65), Expect = 5.3 Identities = 25/74 (33%), Positives = 35/74 (47%) Frame = -3 Query: 445 TSSFINEAMALGWSCLAGPPTSANPVSDTTAFTNGFLVMGSTR*RSMGPEKSSPPAKMGM 266 TSS +N A G S + PPTS+ S TT +G S S ++ P G Sbjct: 70 TSSAVNSATTPGHSGSSAPPTSSAVNSATTPVHSG----SSAPVTSSAVNSATTPVHSGS 125 Query: 265 TLAPLASSSMMTAT 224 + AP SS++ +AT Sbjct: 126 S-APPTSSAVNSAT 138 Score = 28.9 bits (63), Expect = 9.1 Identities = 27/82 (32%), Positives = 40/82 (48%) Frame = -3 Query: 469 SGSATMYGTSSFINEAMALGWSCLAGPPTSANPVSDTTAFTNGFLVMGSTR*RSMGPEKS 290 SGS+ TSS ++ A G S + PPTS+ S TT +G S S + Sbjct: 43 SGSSAP-ATSSAVDSATTPGHSGSSAPPTSSAVNSATTPGHSG----SSAPPTSSAVNSA 97 Query: 289 SPPAKMGMTLAPLASSSMMTAT 224 + P G + AP+ SS++ +AT Sbjct: 98 TTPVHSGSS-APVTSSAVNSAT 118
>SYN_CLOPE (P58693) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 465 Score = 29.3 bits (64), Expect = 7.0 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +3 Query: 174 GLVLQRSHIVTGDDGH--YVAVIMELEARGAKVIPIFAGGLDFSGPIERYLVDPITKKP 344 GL+ + +H+V + G Y + L+ G + G+D ERYL + I KKP Sbjct: 294 GLLERLNHVVNSEFGKVTYTEAVKLLQESGKEFEYPVEWGIDLQTEHERYLTEQIFKKP 352
>GLMS_STRP6 (Q5XBV6) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 603 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +3 Query: 165 PVIGLVLQRSHIVTGDDGHYVAVIMELEARGAKVIPIFAGGLDFSG 302 PVIGL+ + G+ I E+ ARGA V+ + GLD G Sbjct: 513 PVIGLISSSELVAAHTRGN----IQEVAARGASVLTVVEEGLDREG 554
>ENO_AQUAE (O66778) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 426 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/40 (45%), Positives = 19/40 (47%) Frame = -2 Query: 443 VELHQRGDGLGVVLPGRPTDEREPGERHHGVHKRLLGDGV 324 VEL G +V G T ERE E G KR LG GV Sbjct: 25 VELESGALGRAIVPSGASTGEREALELRDGDPKRYLGKGV 64
>CARB_DEIRA (Q9RWK0) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1024 Score = 28.9 bits (63), Expect = 9.1 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%) Frame = -2 Query: 341 LLGDGVDQVA--LDGAGEVEPAGEDGDDL 261 L+GDG+D+VA L+GAG +DGD+L Sbjct: 940 LIGDGLDEVAGTLEGAGLKVIREQDGDEL 968
>TRH_MOUSE (Q62361) Thyroliberin precursor [Contains: Prothyroliberin;| Thyroliberin (Thyrotropin-releasing hormone) (TRH) (Thyrotropin-releasing factor) (TRF) (TSH-releasing factor) (Protirelin)] Length = 256 Score = 28.9 bits (63), Expect = 9.1 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = -2 Query: 527 LDGVKAQGAVEPLLRGLEHERQRDDVRHV--ELHQRGDGLGVVLPGRPTDEREPGER 363 L+ + +GAV P L GLE + R + R + +L + LG L T + PG+R Sbjct: 26 LEAAQEEGAVTPDLPGLEKVQVRPERRFLRKDLQRVRGDLGAALDSWITKRQHPGKR 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,096,481 Number of Sequences: 219361 Number of extensions: 1179379 Number of successful extensions: 4504 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4493 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
