ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62j20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U26916.1|HVU26916 Hordeum vulgare protoporphyrin IX Mg-chelatase subunit precursor (Xantha-f) gene, complete cds Length = 6364 Score = 1011 bits (510), Expect = 0.0 Identities = 515/517 (99%) Strand = Plus / Plus Query: 12 ggcgacgacatcaggtacaacgaccccgtgctcttcctngacaccggcatctggcacccg 71 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1694 ggcgccgacatcaggtacaacgaccccgtgctcttcctcgacaccggcatctggcacccg 1753 Query: 72 ctcgcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1754 ctcgcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 1813 Query: 132 gacgccaacgacaggctcaagaacccagaggcgcccgtcatcggcctcgtcctgcagcgc 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1814 gacgccaacgacaggctcaagaacccagaggcgcccgtcatcggcctcgtcctgcagcgc 1873 Query: 192 agccacattgtcaccggggacgacggacactacgtcgccgtcatcatggagctcgaggcc 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1874 agccacattgtcaccggggacgacggacactacgtcgccgtcatcatggagctcgaggcc 1933 Query: 252 agaggcgccaaggtcatccccatcttcgccggcgggctcgacttctccggccccatcgag 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1934 agaggcgccaaggtcatccccatcttcgccggcgggctcgacttctccggccccatcgag 1993 Query: 312 cgctacctggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctcacc 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1994 cgctacctggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctcacc 2053 Query: 372 gggttcgcgctcgtcggtgggccggccaggcaggaccaccccaaggccatcgcctcgttg 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2054 gggttcgcgctcgtcggtgggccggccaggcaggaccaccccaaggccatcgcctcgttg 2113 Query: 432 atgaagctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggaggag 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2114 atgaagctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggaggag 2173 Query: 492 tggctcaacagcaccttgggccttcaccccatccagg 528 ||||||||||||||||||||||||||||||||||||| Sbjct: 2174 tggctcaacagcaccttgggccttcaccccatccagg 2210
>gb|AY039003.1| Hordeum vulgare subsp. vulgare Mg-chelatase subunit XANTHA-F (Xantha-f) gene, complete cds Length = 6252 Score = 963 bits (486), Expect = 0.0 Identities = 509/517 (98%) Strand = Plus / Plus Query: 12 ggcgacgacatcaggtacaacgaccccgtgctcttcctngacaccggcatctggcacccg 71 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1678 ggcgccgacatcaggtacaacgaccccgtgctcttcctcgacaccggcatctggcacccg 1737 Query: 72 ctcgcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 131 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1738 ctcgcgcctaccatgtacgacgatgtcaaggagtacctcaactggtacggcacccgccgc 1797 Query: 132 gacgccaacgacaggctcaagaacccagaggcgcccgtcatcggcctcgtcctgcagcgc 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1798 gacgccaacgacaggctcaagaacccagaggcgcccgtcatcggcctcgtcctgcagcgc 1857 Query: 192 agccacattgtcaccggggacgacggacactacgtcgccgtcatcatggagctcgaggcc 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1858 agccacattgtcaccggggacgacggacactacgtcgccgtcatcatggagctcgaggcc 1917 Query: 252 agaggcgccaaggtcatccccatcttcgccggcgggctcgacttctccggccccatcgag 311 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 1918 agaggcgccaaggtcatccccatctttgccggcgggctcgacttctccggccccattgag 1977 Query: 312 cgctacctggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctcacc 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1978 cgctacctggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctcacc 2037 Query: 372 gggttcgcgctcgtcggtgggccggccaggcaggaccaccccaaggccatcgcctcgttg 431 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct: 2038 gggttcgcgctcgtcggcgggccggccaggcaggaccaccccaaggccatcgcctcgctg 2097 Query: 432 atgaagctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggaggag 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2098 atgaagctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggaggag 2157 Query: 492 tggctcaacagcaccttgggccttcaccccatccagg 528 ||||||||||||||||||||||||||||||||||||| Sbjct: 2158 tggctcaacagcaccttgggccttcaccccatccagg 2194
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 535 bits (270), Expect = e-149 Identities = 449/509 (88%) Strand = Plus / Plus Query: 12 ggcgacgacatcaggtacaacgaccccgtgctcttcctngacaccggcatctggcacccg 71 |||| |||||||| |||| |||||||||| |||||||| ||| | || |||||||||||| Sbjct: 11686397 ggcgccgacatcaagtacgacgaccccgtcctcttcctcgacgctggtatctggcacccg 11686456 Query: 72 ctcgcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 131 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11686457 ctggcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 11686516 Query: 132 gacgccaacgacaggctcaagaacccagaggcgcccgtcatcggcctcgtcctgcagcgc 191 ||| ||||||||| ||||||| |||| | ||||| || ||||||||||| ||||| | Sbjct: 11686517 gacaccaacgacaagctcaaggaccccaacgcgccggtgatcggcctcgttttgcagagg 11686576 Query: 192 agccacattgtcaccggggacgacggacactacgtcgccgtcatcatggagctcgaggcc 251 ||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct: 11686577 agccacattgtcaccggagacgacggtcactacgtcgccgtgatcatggagctggaggcc 11686636 Query: 252 agaggcgccaaggtcatccccatcttcgccggcgggctcgacttctccggccccatcgag 311 | || ||||||||||| || ||||||||||||||||| |||||||| || |||| || Sbjct: 11686637 aagggtgccaaggtcataccgatcttcgccggcgggctggacttctcgggacccacgcag 11686696 Query: 312 cgctacctggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctcacc 371 || ||||| |||||||| |||||| |||||||| |||||||| ||||||||||||||| Sbjct: 11686697 cggtacctcgtcgacccgatcaccggaaagccgttcgtgaacgcggtggtgtcgctcacc 11686756 Query: 372 gggttcgcgctcgtcggtgggccggccaggcaggaccaccccaaggccatcgcctcgttg 431 ||||||||||||||||| ||||| || ||||||||||| |||||||| |||||| || || Sbjct: 11686757 gggttcgcgctcgtcggagggccagcgaggcaggaccatcccaaggcgatcgccgcgctg 11686816 Query: 432 atgaagctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggaggag 491 |||||||||||||||||||||||| || |||||||||||||||||||| || |||||| Sbjct: 11686817 cagaagctcgacgtgccgtacatcgtggcactgccgctcgtgttccagacgacagaggag 11686876 Query: 492 tggctcaacagcaccttgggccttcaccc 520 ||||| |||||||| |||||||| ||||| Sbjct: 11686877 tggctgaacagcacattgggcctgcaccc 11686905
>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0093J20, from chromosome 3, complete sequence Length = 148635 Score = 535 bits (270), Expect = e-149 Identities = 449/509 (88%) Strand = Plus / Plus Query: 12 ggcgacgacatcaggtacaacgaccccgtgctcttcctngacaccggcatctggcacccg 71 |||| |||||||| |||| |||||||||| |||||||| ||| | || |||||||||||| Sbjct: 75492 ggcgccgacatcaagtacgacgaccccgtcctcttcctcgacgctggtatctggcacccg 75551 Query: 72 ctcgcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 131 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75552 ctggcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 75611 Query: 132 gacgccaacgacaggctcaagaacccagaggcgcccgtcatcggcctcgtcctgcagcgc 191 ||| ||||||||| ||||||| |||| | ||||| || ||||||||||| ||||| | Sbjct: 75612 gacaccaacgacaagctcaaggaccccaacgcgccggtgatcggcctcgttttgcagagg 75671 Query: 192 agccacattgtcaccggggacgacggacactacgtcgccgtcatcatggagctcgaggcc 251 ||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct: 75672 agccacattgtcaccggagacgacggtcactacgtcgccgtgatcatggagctggaggcc 75731 Query: 252 agaggcgccaaggtcatccccatcttcgccggcgggctcgacttctccggccccatcgag 311 | || ||||||||||| || ||||||||||||||||| |||||||| || |||| || Sbjct: 75732 aagggtgccaaggtcataccgatcttcgccggcgggctggacttctcgggacccacgcag 75791 Query: 312 cgctacctggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctcacc 371 || ||||| |||||||| |||||| |||||||| |||||||| ||||||||||||||| Sbjct: 75792 cggtacctcgtcgacccgatcaccggaaagccgttcgtgaacgcggtggtgtcgctcacc 75851 Query: 372 gggttcgcgctcgtcggtgggccggccaggcaggaccaccccaaggccatcgcctcgttg 431 ||||||||||||||||| ||||| || ||||||||||| |||||||| |||||| || || Sbjct: 75852 gggttcgcgctcgtcggagggccagcgaggcaggaccatcccaaggcgatcgccgcgctg 75911 Query: 432 atgaagctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggaggag 491 |||||||||||||||||||||||| || |||||||||||||||||||| || |||||| Sbjct: 75912 cagaagctcgacgtgccgtacatcgtggcactgccgctcgtgttccagacgacagaggag 75971 Query: 492 tggctcaacagcaccttgggccttcaccc 520 ||||| |||||||| |||||||| ||||| Sbjct: 75972 tggctgaacagcacattgggcctgcaccc 76000
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 535 bits (270), Expect = e-149 Identities = 449/509 (88%) Strand = Plus / Plus Query: 12 ggcgacgacatcaggtacaacgaccccgtgctcttcctngacaccggcatctggcacccg 71 |||| |||||||| |||| |||||||||| |||||||| ||| | || |||||||||||| Sbjct: 11683160 ggcgccgacatcaagtacgacgaccccgtcctcttcctcgacgctggtatctggcacccg 11683219 Query: 72 ctcgcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 131 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11683220 ctggcgcccaccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgc 11683279 Query: 132 gacgccaacgacaggctcaagaacccagaggcgcccgtcatcggcctcgtcctgcagcgc 191 ||| ||||||||| ||||||| |||| | ||||| || ||||||||||| ||||| | Sbjct: 11683280 gacaccaacgacaagctcaaggaccccaacgcgccggtgatcggcctcgttttgcagagg 11683339 Query: 192 agccacattgtcaccggggacgacggacactacgtcgccgtcatcatggagctcgaggcc 251 ||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct: 11683340 agccacattgtcaccggagacgacggtcactacgtcgccgtgatcatggagctggaggcc 11683399 Query: 252 agaggcgccaaggtcatccccatcttcgccggcgggctcgacttctccggccccatcgag 311 | || ||||||||||| || ||||||||||||||||| |||||||| || |||| || Sbjct: 11683400 aagggtgccaaggtcataccgatcttcgccggcgggctggacttctcgggacccacgcag 11683459 Query: 312 cgctacctggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctcacc 371 || ||||| |||||||| |||||| |||||||| |||||||| ||||||||||||||| Sbjct: 11683460 cggtacctcgtcgacccgatcaccggaaagccgttcgtgaacgcggtggtgtcgctcacc 11683519 Query: 372 gggttcgcgctcgtcggtgggccggccaggcaggaccaccccaaggccatcgcctcgttg 431 ||||||||||||||||| ||||| || ||||||||||| |||||||| |||||| || || Sbjct: 11683520 gggttcgcgctcgtcggagggccagcgaggcaggaccatcccaaggcgatcgccgcgctg 11683579 Query: 432 atgaagctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggaggag 491 |||||||||||||||||||||||| || |||||||||||||||||||| || |||||| Sbjct: 11683580 cagaagctcgacgtgccgtacatcgtggcactgccgctcgtgttccagacgacagaggag 11683639 Query: 492 tggctcaacagcaccttgggccttcaccc 520 ||||| |||||||| |||||||| ||||| Sbjct: 11683640 tggctgaacagcacattgggcctgcaccc 11683668
>gb|BT009033.1| Triticum aestivum clone wdk4c.pk005.f24:fis, full insert mRNA sequence Length = 3257 Score = 505 bits (255), Expect = e-140 Identities = 273/279 (97%) Strand = Plus / Plus Query: 250 ccagaggcgccaaggtcatccccatcttcgccggcgggctcgacttctccggccccatcg 309 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ccaggggcgccaaggtcatccccatcttcgccggcgggctcgacttctccggccccatcg 60 Query: 310 agcgctacctggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctca 369 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 61 agcgctacctcgtcgaccccatcaccaagaagccgttcgtgaacgccgtggtgtcgctca 120 Query: 370 ccgggttcgcgctcgtcggtgggccggccaggcaggaccaccccaaggccatcgcctcgt 429 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccgggttcgcgctcgtcggcgggccggccaggcaggaccaccccaaggccatcgcctcgc 180 Query: 430 tgatgaagctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggagg 489 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tgatgaagctagacgtgccgtacatcgtcgcgctgccgctcgtgttccagaccacggagg 240 Query: 490 agtggctcaacagcaccttgggccttcaccccatccagg 528 ||||||||||||||||||||||||||||||||||||||| Sbjct: 241 agtggctcaacagcaccttgggccttcaccccatccagg 279
>dbj|AK067323.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B16, full insert sequence Length = 4228 Score = 504 bits (254), Expect = e-139 Identities = 421/477 (88%) Strand = Plus / Plus Query: 44 cttcctngacaccggcatctggcacccgctcgcgcccaccatgtacgacgacgtcaagga 103 |||||| ||| | || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 253 cttcctcgacgctggtatctggcacccgctggcgcccaccatgtacgacgacgtcaagga 312 Query: 104 gtacctcaactggtacggcacccgccgcgacgccaacgacaggctcaagaacccagaggc 163 ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| | || Sbjct: 313 gtacctcaactggtacggcacccgccgcgacaccaacgacaagctcaaggaccccaacgc 372 Query: 164 gcccgtcatcggcctcgtcctgcagcgcagccacattgtcaccggggacgacggacacta 223 ||| || ||||||||||| ||||| | ||||||||||||||||| |||||||| ||||| Sbjct: 373 gccggtgatcggcctcgttttgcagaggagccacattgtcaccggagacgacggtcacta 432 Query: 224 cgtcgccgtcatcatggagctcgaggccagaggcgccaaggtcatccccatcttcgccgg 283 ||||||||| ||||||||||| ||||||| || ||||||||||| || ||||||||||| Sbjct: 433 cgtcgccgtgatcatggagctggaggccaagggtgccaaggtcataccgatcttcgccgg 492 Query: 284 cgggctcgacttctccggccccatcgagcgctacctggtcgaccccatcaccaagaagcc 343 |||||| |||||||| || |||| |||| ||||| |||||||| |||||| ||||| Sbjct: 493 cgggctggacttctcgggacccacgcagcggtacctcgtcgacccgatcaccggaaagcc 552 Query: 344 gtttgtgaacgccgtggtgtcgctcaccgggttcgcgctcgtcggtgggccggccaggca 403 ||| |||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 553 gttcgtgaacgcggtggtgtcgctcaccgggttcgcgctcgtcggagggccagcgaggca 612 Query: 404 ggaccaccccaaggccatcgcctcgttgatgaagctcgacgtgccgtacatcgtcgcgct 463 |||||| |||||||| |||||| || || |||||||||||||||||||||||| || || Sbjct: 613 ggaccatcccaaggcgatcgccgcgctgcagaagctcgacgtgccgtacatcgtggcact 672 Query: 464 gccgctcgtgttccagaccacggaggagtggctcaacagcaccttgggccttcaccc 520 |||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| Sbjct: 673 gccgctcgtgttccagacgacagaggagtggctgaacagcacattgggcctgcaccc 729
>gb|AY109455.1| Zea mays CL592_1 mRNA sequence Length = 4066 Score = 436 bits (220), Expect = e-119 Identities = 321/355 (90%) Strand = Plus / Plus Query: 20 catcaggtacaacgaccccgtgctcttcctngacaccggcatctggcacccgctcgcgcc 79 ||||| |||| |||||||||| |||| ||| ||| ||||||||||||||||||| ||||| Sbjct: 561 catcaagtacgacgaccccgttctctacctcgactccggcatctggcacccgctggcgcc 620 Query: 80 caccatgtacgacgacgtcaaggagtacctcaactggtacggcacccgccgcgacgccaa 139 |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 621 caccatgtacgaggacgtcaaggagtacctcaactggtacggcacgcgccgggacgccaa 680 Query: 140 cgacaggctcaagaacccagaggcgcccgtcatcggcctcgtcctgcagcgcagccacat 199 ||||||||||||| |||| |||||||| |||||||||||||||||||| | |||||||| Sbjct: 681 cgacaggctcaaggaccccaaggcgcccatcatcggcctcgtcctgcagaggagccacat 740 Query: 200 tgtcaccggggacgacggacactacgtcgccgtcatcatggagctcgaggccagaggcgc 259 ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 741 tgtcaccggcgacgacgggcactacgtcgccgtcatcatggagctcgaggccaagggcgc 800 Query: 260 caaggtcatccccatcttcgccggcgggctcgacttctccggccccatcgagcgctacct 319 ||||||||| ||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct: 801 caaggtcatacccatcttcgccggcggcctcgacttctccgggcccacacagcgctacct 860 Query: 320 ggtcgaccccatcaccaagaagccgtttgtgaacgccgtggtgtcgctcaccggg 374 ||||||||| || ||| ||| |||| ||||||||||||||||| ||||||||| Sbjct: 861 ggtcgacccgattaccggcaagacgttcgtgaacgccgtggtgtctctcaccggg 915 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Plus Query: 411 cccaaggccatcgcctcgttgatgaagctcgacgtgccgtacatcgtcgcgctgccgctc 470 ||||||||||| ||| || || ||||||||||||||||||||| |||||||| |||||| Sbjct: 952 cccaaggccattgccgcgctgcagaagctcgacgtgccgtacattgtcgcgctcccgctc 1011 Query: 471 gtgttccagaccacggaggagtggctcaacagcaccttgggccttcaccc 520 ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1012 gtgttccagaccacggaggagtggctcaacagcaccttggggcttcaccc 1061
>emb|AJ307055.1|CRE307055 Chlamydomonas reinhardtii chlH gene for Magnesium chelatase H-subunit, exons 1-12 Length = 7035 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 460 cgctgccgctcgtgttccagaccacggaggagtggct 496 |||||||||| |||||||||||||| ||||||||||| Sbjct: 2798 cgctgccgctggtgttccagaccactgaggagtggct 2834
>emb|AJ307054.1|CRE307054 Chlamydomonas reinhardtii mRNA for Magnesium chelatase H subunit Length = 5050 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 460 cgctgccgctcgtgttccagaccacggaggagtggct 496 |||||||||| |||||||||||||| ||||||||||| Sbjct: 1329 cgctgccgctggtgttccagaccactgaggagtggct 1365 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 83 catgtacgacgacgtcaaggagtacctcaactggtacggcacccgc 128 ||||||||| ||| | ||||||||||| |||||||||| ||||||| Sbjct: 958 catgtacgaggacctgaaggagtacctgaactggtacgacacccgc 1003 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 261 aaggtcatccccatcttcgccggcgggctcgacttctccggcccc 305 |||||||||||| |||| ||||| || || |||||||||| |||| Sbjct: 1127 aaggtcatccccgtctttgccggtggactggacttctccgacccc 1171
>emb|AJ001091.1|GMCHLH Glycine max mRNA for magnesium chelatase subunit Length = 4449 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 234 atcatggagctcgaggccagaggcgccaaggtcatccccatcttcgccggcgggctcgac 293 ||||||||||| ||||| ||||| || |||||||| ||||| || |||||||| || ||| Sbjct: 1170 atcatggagctggaggctagaggggctaaggtcattcccatttttgccggcggacttgac 1229 Query: 294 tt 295 || Sbjct: 1230 tt 1231
>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7 Length = 349823 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 171 atcggcctcgtcctgcagcgcagccacattgtcaccggggacgacggacactacgtcgcc 230 ||||| || ||||||||||| |||||||||||||| || ||||| | ||||| ||||| Sbjct: 191772 atcggtcttgtcctgcagcgaagccacattgtcactggtgacgatgcccactatgtcgct 191831 Query: 231 gtcat 235 ||||| Sbjct: 191832 gtcat 191836 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcaaggagtacctcaactgg 116 |||||||||||||||||||| Sbjct: 191704 tcaaggagtacctcaactgg 191723
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 170 catcggcctcgtcctgcagcgcagccacattgtcaccggggacga 214 ||||||||| || ||||||||||||||| | |||||||| ||||| Sbjct: 2099656 catcggcctggtgctgcagcgcagccacttggtcaccggcgacga 2099612 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 57 ggcatctggcacccgctcgcgcccaccatgtacgacgacgtcaaggagtacctcaactgg 116 ||||||||||||||||| || ||| |||| || ||| | |||||||||||||||||| Sbjct: 2099757 ggcatctggcacccgctggcaccccagatgtttgaggacttgaaggagtacctcaactgg 2099698 Query: 117 ta 118 || Sbjct: 2099697 ta 2099696 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Minus Query: 450 tacatcgtcgcgctgccgctcgtgttccagaccacggaggagtgg 494 ||||| || ||||||||||| || ||||| |||||||| |||||| Sbjct: 2099373 tacatggtggcgctgccgctggtcttccaaaccacggaagagtgg 2099329
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 170 catcggcctcgtcctgcagcgcagccacattgtcaccggggacga 214 ||||||||| || ||||||||||||||| | |||||||| ||||| Sbjct: 2217374 catcggcctggtgctgcagcgcagccacttggtcaccggcgacga 2217418 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Plus Query: 57 ggcatctggcacccgctcgcgcccaccatgtacgacgacgtcaaggagtacctcaactgg 116 ||||||||||||||||| || ||| |||| || ||| | |||||||||||||||||| Sbjct: 2217273 ggcatctggcacccgctggcaccccagatgtttgaggacttgaaggagtacctcaactgg 2217332 Query: 117 ta 118 || Sbjct: 2217333 ta 2217334 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 450 tacatcgtcgcgctgccgctcgtgttccagaccacggaggagtgg 494 ||||| || ||||||||||| || ||||| |||||||| |||||| Sbjct: 2217657 tacatggtggcgctgccgctggtcttccaaaccacggaagagtgg 2217701
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Minus Query: 183 ctgcagcgcagccacattgtcaccggggacga 214 ||||||||||||||||| |||||||| ||||| Sbjct: 1670365 ctgcagcgcagccacatcgtcaccggtgacga 1670334
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Minus Query: 352 acgccgtggtgtcgctcaccgggttcgcgctcgtcggtgg 391 |||| ||||||||||||||||| ||| |||| |||||||| Sbjct: 4545070 acgcggtggtgtcgctcaccggcttctcgctggtcggtgg 4545031
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 360 gtgtcgctcaccgggttcgcgctcgtcggtgggccggccaggcaggaccaccccaaggc 418 |||||||| |||||||| || || || || |||||||| ||||||| ||||||||||| Sbjct: 941172 gtgtcgctaaccgggtttgccctggtgggagggccggcgcggcaggatcaccccaaggc 941230
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 357 gtggtgtcgctcaccgggttcgcgctcgtcggtgggccggccaggcaggaccaccccaa 415 ||||||||||| |||||||| || || || || |||||||| ||||||| |||||||| Sbjct: 1333723 gtggtgtcgctaaccgggtttgccctggtgggcgggccggcgcggcaggatcaccccaa 1333665
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 451 acatcgtcgcgctgccgctcgtg 473 ||||||||||||||||||||||| Sbjct: 2271287 acatcgtcgcgctgccgctcgtg 2271309
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 ggcgccaaggtcatccccatct 276 |||||||||||||||||||||| Sbjct: 3570114 ggcgccaaggtcatccccatct 3570093
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 ggcgccaaggtcatccccatct 276 |||||||||||||||||||||| Sbjct: 3570282 ggcgccaaggtcatccccatct 3570261
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 353 cgccgtggtgtcgctcaccgggttcgcgctcgtc 386 ||||| ||||| ||| |||||||||||||||||| Sbjct: 31829 cgccggggtgtggctgaccgggttcgcgctcgtc 31862
>ref|XM_755166.1| Ustilago maydis 521 hypothetical protein (UM04112.1) partial mRNA Length = 9072 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 88 acgacgacgtcaaggagtacctcaac 113 |||| ||||||||||||||||||||| Sbjct: 3557 acgaagacgtcaaggagtacctcaac 3582
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 183 ctgcagcgcagccacattgtcaccgg 208 ||||||||||||||||| |||||||| Sbjct: 91483 ctgcagcgcagccacatcgtcaccgg 91508 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcaaggagtacctcaactgg 116 |||||||||||||||||||| Sbjct: 91403 tcaaggagtacctcaactgg 91422
>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds, stain:IL144 Length = 58996 Score = 44.1 bits (22), Expect = 0.46 Identities = 40/46 (86%) Strand = Plus / Minus Query: 436 agctcgacgtgccgtacatcgtcgcgctgccgctcgtgttccagac 481 ||||||||||||| ||||||| ||||| ||| ||| ||||||||| Sbjct: 35254 agctcgacgtgccctacatcgccgcgcatccggtcgagttccagac 35209
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 acatcgtcgcgctgccgctcg 471 ||||||||||||||||||||| Sbjct: 1841381 acatcgtcgcgctgccgctcg 1841401
>gb|DQ377805.1|DQ377804S2 Squirrelpox virus 1296/99, partial genome Length = 37108 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 tacgacgacgtcaaggagtac 107 ||||||||||||||||||||| Sbjct: 10562 tacgacgacgtcaaggagtac 10542
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 acgccgtggtgtcgctcaccg 372 ||||||||||||||||||||| Sbjct: 2409433 acgccgtggtgtcgctcaccg 2409453
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 cgctcaccgggttcgcgctcg 384 ||||||||||||||||||||| Sbjct: 2167550 cgctcaccgggttcgcgctcg 2167530
>dbj|AK058134.1| Homo sapiens cDNA FLJ25405 fis, clone TST02892 Length = 1701 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 ggcaggaccaccccaaggcca 420 ||||||||||||||||||||| Sbjct: 1486 ggcaggaccaccccaaggcca 1466
>emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-725G5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195835 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 ggcaggaccaccccaaggcca 420 ||||||||||||||||||||| Sbjct: 13789 ggcaggaccaccccaaggcca 13809
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 tcgtcgcgctgccgctcgtg 473 |||||||||||||||||||| Sbjct: 1999701 tcgtcgcgctgccgctcgtg 1999720
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cgtgccgtacatcgtcgcgc 462 |||||||||||||||||||| Sbjct: 208046 cgtgccgtacatcgtcgcgc 208027
>ref|NM_187360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 171 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtacgacgacgtcaaggagt 105 |||||||||||||||||||| Sbjct: 51 gtacgacgacgtcaaggagt 70
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acgtcaaggagtacctcaac 113 |||||||||||||||||||| Sbjct: 1727517 acgtcaaggagtacctcaac 1727536
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 gctcgtgttccagaccacgg 486 |||||||||||||||||||| Sbjct: 289243 gctcgtgttccagaccacgg 289262
>ref|XM_365440.1| Magnaporthe grisea 70-15 hypothetical protein (MG02142.4) partial mRNA Length = 3546 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gcgacgacatcaggtacaacgacc 36 |||||||||||||| ||||||||| Sbjct: 2992 gcgacgacatcaggcacaacgacc 3015
>ref|XM_369864.1| Magnaporthe grisea 70-15 hypothetical protein (MG06379.4) partial mRNA Length = 15261 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 aacgacaggctcaagaacccagag 161 |||| ||||||||||||||||||| Sbjct: 13691 aacgccaggctcaagaacccagag 13714
>ref|XM_566981.1| Cryptococcus neoformans var. neoformans JEC21 60s ribosomal protein l7 (CNA06360) partial mRNA Length = 937 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acgtcaaggagtacctcaac 113 |||||||||||||||||||| Sbjct: 197 acgtcaaggagtacctcaac 216
>ref|XM_782090.1| PREDICTED: Strongylocentrotus purpuratus similar to Lysosomal alpha-glucosidase precursor (Acid maltase) (LOC582120), mRNA Length = 3117 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tgaagctcgacgtgccgtac 452 |||||||||||||||||||| Sbjct: 638 tgaagctcgacgtgccgtac 657
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 357 gtggtgtcgctcaccgggttcgcgctcgtcgg 388 ||||||||||||||||| ||| |||| ||||| Sbjct: 317493 gtggtgtcgctcaccggcttctcgctggtcgg 317524
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 tctccggccccatcgagcgc 314 |||||||||||||||||||| Sbjct: 70205 tctccggccccatcgagcgc 70186
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtacgacgacgtcaaggagt 105 |||||||||||||||||||| Sbjct: 18531549 gtacgacgacgtcaaggagt 18531568
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 gccatcgcctcgttgatgaagctc 440 ||||||||| |||||||||||||| Sbjct: 4277287 gccatcgccgcgttgatgaagctc 4277264 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gccggccaggcaggaccacc 411 |||||||||||||||||||| Sbjct: 3168843 gccggccaggcaggaccacc 3168862
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ttcgccggcgggctcgactt 295 |||||||||||||||||||| Sbjct: 3769773 ttcgccggcgggctcgactt 3769754
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtacgacgacgtcaaggagt 105 |||||||||||||||||||| Sbjct: 60305 gtacgacgacgtcaaggagt 60324
>gb|AC154771.2| Mus musculus BAC clone RP24-448F8 from 13, complete sequence Length = 165376 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 catcatggagctcgaggccagagg 256 |||||||||||| ||||||||||| Sbjct: 107159 catcatggagctggaggccagagg 107182
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tgcagcgcagccacattgtc 203 |||||||||||||||||||| Sbjct: 2732204 tgcagcgcagccacattgtc 2732185
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgtgccgtacatcgtcgcgc 462 |||||||||||||||||||| Sbjct: 3636803 cgtgccgtacatcgtcgcgc 3636822
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 290 cgacttctccggccccatcgagcgctac 317 ||||||| |||||| ||||||||||||| Sbjct: 3777213 cgacttcgccggccgcatcgagcgctac 3777186
>dbj|AB036425.1| Rhodobacter sphaeroides f. sp. denitrificans dppA gene for dipeptide transport protein, complete cds Length = 2139 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 gctcgtgttccagaccacgg 486 |||||||||||||||||||| Sbjct: 167 gctcgtgttccagaccacgg 186
>dbj|AB017351.1| Acidiphilium rubrum genes for 2-vinyl bacteriochlorophyll hydratase, light-independent protochlorophyllide reductase, magnesium chelatase, partial and complete cds Length = 7482 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 tcggcctcgtcctgcagcgcagcc 195 ||||||||||||||| |||||||| Sbjct: 4368 tcggcctcgtcctgctgcgcagcc 4391 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,801,600 Number of Sequences: 3902068 Number of extensions: 2801600 Number of successful extensions: 53032 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51286 Number of HSP's gapped (non-prelim): 1744 length of query: 528 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 505 effective length of database: 17,143,297,704 effective search space: 8657365340520 effective search space used: 8657365340520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
