ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62i12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189364.1| Oryza sativa (japonica cultivar-group), predic... 50 0.009
2dbj|AK071901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
3dbj|AK063388.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
4ref|XM_785779.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.54
5gb|AC096585.5| Homo sapiens BAC clone RP11-667L17 from 4, comple... 44 0.54
6emb|BX649630.9| Zebrafish DNA sequence from clone DKEY-125B7 in ... 44 0.54
7emb|BX005111.4| Zebrafish DNA sequence from clone CH211-273E17 i... 44 0.54
8gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, c... 42 2.1
9gb|AC146649.17| Medicago truncatula clone mth2-10d6, complete se... 42 2.1
10dbj|AK165481.1| Mus musculus adult male kidney cDNA, RIKEN full-... 42 2.1
11gb|AC131698.4| Mus musculus BAC clone RP23-428E12 from 3, comple... 42 2.1
12gb|AY225084.1| Isophysis tasmanica NADH dehydrogenase subunit F ... 40 8.4
13gb|AY225057.1| Kniphofia uvaria NADH dehydrogenase subunit F (nd... 40 8.4
14gb|AY225053.1| Milligania sp. JCP-2003 NADH dehydrogenase subuni... 40 8.4
15ref|XM_509001.1| PREDICTED: Pan troglodytes kinesin family membe... 40 8.4
16ref|XM_480336.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.4
17ref|XM_480333.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.4
18ref|XM_480334.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.4
19gb|AC162898.10| Mus musculus chromosome 5, clone RP23-391P21, co... 40 8.4
20gb|AY147790.1| Muilla maritima NADH dehydrogenase subunit F (ndh... 40 8.4
21gb|AY147788.1| Asparagus officinalis NADH dehydrogenase subunit ... 40 8.4
22ref|XM_863894.1| PREDICTED: Bos taurus similar to Kinesin family... 40 8.4
23ref|XM_591360.2| PREDICTED: Bos taurus similar to Kinesin family... 40 8.4
24ref|XM_871694.1| PREDICTED: Bos taurus similar to Lymphocyte cyt... 40 8.4
25ref|XM_590899.2| PREDICTED: Bos taurus similar to Lymphocyte cyt... 40 8.4
26gb|DQ175967.1| Hordeum vulgare subsp. vulgare clone 40-21A-LB fl... 40 8.4
27gb|DQ175962.1| Hordeum vulgare subsp. vulgare clone 40-21A-LB fl... 40 8.4
28gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, compl... 40 8.4
29gb|AC125166.3| Mus musculus BAC clone RP24-435J4 from chromosome... 40 8.4
30gb|AC144633.3| Mus musculus BAC clone RP23-26J4 from chromosome ... 40 8.4
31gb|U79228.2|CCU79228 Cyanastrum cordifolium NADH dehydrogenase s... 40 8.4
32gb|AY368076.1| Homo sapiens kinesin family member 21A (KIF21A) m... 40 8.4
33gb|AC132233.4| Mus musculus BAC clone RP24-490D10 from chromosom... 40 8.4
34gb|AC132379.3| Mus musculus BAC clone RP23-412C9 from chromosome... 40 8.4
35gb|AF508403.1| Asparagus falcatus NADH dehydrogenase subunit F (... 40 8.4
36gb|AF508393.1| Hyacinthus orientalis NADH dehydrogenase subunit ... 40 8.4
37gb|AF508376.1| Muilla transmontana NADH dehydrogenase subunit F ... 40 8.4
38gb|AF508375.1| Muilla maritima NADH dehydrogenase subunit F (ndh... 40 8.4
39gb|AF508373.1| Muilla clevelandii NADH dehydrogenase subunit F (... 40 8.4
40gb|AC098730.3| Mus musculus BAC clone RP23-3J2 from 1, complete ... 40 8.4
41ref|NM_017641.2| Homo sapiens kinesin family member 21A (KIF21A)... 40 8.4
42gb|AF450487.1| Homo sapiens kinesin-like protein KIF2 mRNA, comp... 40 8.4
43gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc... 40 8.4
44emb|BX537855.1|HSM805954 Homo sapiens mRNA; cDNA DKFZp779N1963 (... 40 8.4
45emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4,... 40 8.4
46emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4,... 40 8.4
47gb|AC160977.2| Mus musculus BAC clone RP23-446C11 from chromosom... 40 8.4
48emb|CR859114.1| Pongo pygmaeus mRNA; cDNA DKFZp469O1020 (from cl... 40 8.4
49gb|AC090668.7| Homo sapiens 12 BAC RP11-791O13 (Roswell Park Can... 40 8.4
50gb|AC138014.36| Medicago truncatula clone mth2-17p13, complete s... 40 8.4
51emb|BX571940.12| Zebrafish DNA sequence from clone DKEY-171N3 in... 40 8.4
52gb|AF276022.1| Tricyrtis latifolia NADH dehydrogenase subunit F ... 40 8.4
53gb|AF276021.1| Tricyrtis affinis NADH dehydrogenase subunit F (n... 40 8.4
54dbj|AK040173.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 40 8.4
55gb|AC102298.14| Mus musculus chromosome 7, clone RP24-396N13, co... 40 8.4
56dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
57dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
58dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
59gb|AC133521.3| Mus musculus BAC clone RP23-189F22 from chromosom... 40 8.4
60ref|NM_001004179.1| Mus musculus hypothetical gene supported by ... 40 8.4
61dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
62dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
63dbj|AK103236.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
64dbj|AK064462.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
65dbj|AK058766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
66emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 8.4
67dbj|AB051495.2| Homo sapiens KIAA1708 mRNA, partial cds 40 8.4
68gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
69emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769... 40 8.4
70emb|AM177179.1| Homo sapiens mRNA for kinesin-like protein KIF21... 40 8.4
71gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 8.4
72dbj|AB047689.2| Oryza sativa mRNA for PolI-like DNA polymerase, ... 40 8.4 
>ref|NM_189364.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1368

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 469 atacatataaaattgatgatgcttatgtcaagtactatgcagaaatttcaaagaaaatca 528
           |||||||| || ||||||| | ||||||||| || | || |||| |  ||||||||||||
Sbjct: 857 atacatatgaagttgatgaggattatgtcaaatattgtgaagaactaccaaagaaaatca 916

                    
Query: 529 agtggattg 537
           |||||||||
Sbjct: 917 agtggattg 925
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>dbj|AK071901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062L08, full
            insert sequence
          Length = 2072

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                        
Query: 469  atacatataaaattgatgatgcttatgtcaagtactatgcagaaatttcaaagaaaatca 528
            |||||||| || ||||||| | ||||||||| || | || |||| |  ||||||||||||
Sbjct: 1006 atacatatgaagttgatgaggattatgtcaaatattgtgaagaactaccaaagaaaatca 1065

                     
Query: 529  agtggattg 537
            |||||||||
Sbjct: 1066 agtggattg 1074
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>dbj|AK063388.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G11, full
            insert sequence
          Length = 1823

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                        
Query: 469  atacatataaaattgatgatgcttatgtcaagtactatgcagaaatttcaaagaaaatca 528
            |||||||| || ||||||| | ||||||||| || | || |||| |  ||||||||||||
Sbjct: 971  atacatatgaagttgatgaggattatgtcaaatattgtgaagaactaccaaagaaaatca 1030

                     
Query: 529  agtggattg 537
            |||||||||
Sbjct: 1031 agtggattg 1039
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>ref|XM_785779.1| PREDICTED: Strongylocentrotus purpuratus similar to ATP-binding
           cassette, sub-family A member 1 (LOC585977), mRNA
          Length = 5034

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 266 agaagaatacactgatgaggaa 287
           ||||||||||||||||||||||
Sbjct: 31  agaagaatacactgatgaggaa 10
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>gb|AC096585.5| Homo sapiens BAC clone RP11-667L17 from 4, complete sequence
          Length = 41633

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 310   aggcattagagaatgatgaaaattttgagtggta 343
             ||||||||| ||||||||||||||| ||| ||||
Sbjct: 14760 aggcattagtgaatgatgaaaatttggagaggta 14793
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>emb|BX649630.9| Zebrafish DNA sequence from clone DKEY-125B7 in linkage group 21,
             complete sequence
          Length = 124133

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 462   cgttatcatacatataaaattgatga 487
             |||| |||||||||||||||||||||
Sbjct: 63068 cgttttcatacatataaaattgatga 63043
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>emb|BX005111.4| Zebrafish DNA sequence from clone CH211-273E17 in linkage group 21,
              complete sequence
          Length = 169747

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 462    cgttatcatacatataaaattgatga 487
              |||| |||||||||||||||||||||
Sbjct: 112154 cgttttcatacatataaaattgatga 112179
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>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence
          Length = 184010

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 257    caaggaaccagaagaatacac 277
              |||||||||||||||||||||
Sbjct: 114890 caaggaaccagaagaatacac 114870
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>gb|AC146649.17| Medicago truncatula clone mth2-10d6, complete sequence
          Length = 113049

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 216    gctcattacaaggttgtaaat 236
              |||||||||||||||||||||
Sbjct: 100481 gctcattacaaggttgtaaat 100501
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>dbj|AK165481.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F530014O12 product:aldehyde reductase
            (aldose reductase)-like 6, full insert sequence
          Length = 2894

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 257  caaggaaccagaagaatacac 277
            |||||||||||||||||||||
Sbjct: 2646 caaggaaccagaagaatacac 2626
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>gb|AC131698.4| Mus musculus BAC clone RP23-428E12 from 3, complete sequence
          Length = 191438

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 465    tatcatacatataaaattgat 485
              |||||||||||||||||||||
Sbjct: 157938 tatcatacatataaaattgat 157918
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>gb|AY225084.1| Isophysis tasmanica NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast
          Length = 2045

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1478 atacatataaaattgatgat 1497
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>gb|AY225057.1| Kniphofia uvaria NADH dehydrogenase subunit F (ndhF) gene, partial
           cds; chloroplast
          Length = 999

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 469 atacatataaaattgatgat 488
           ||||||||||||||||||||
Sbjct: 427 atacatataaaattgatgat 446
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>gb|AY225053.1| Milligania sp. JCP-2003 NADH dehydrogenase subunit F (ndhF) gene,
            partial cds; chloroplast
          Length = 2050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1478 atacatataaaattgatgat 1497
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>ref|XM_509001.1| PREDICTED: Pan troglodytes kinesin family member 21A (LOC451832),
           mRNA
          Length = 3282

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 gccactttatctgacatggg 171
           ||||||||||||||||||||
Sbjct: 980 gccactttatctgacatggg 961
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>ref|XM_480336.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3108

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 466  atcatacatataaaattgatgatg 489
            |||||| |||||||||||||||||
Sbjct: 1946 atcatatatataaaattgatgatg 1969
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>ref|XM_480333.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1656

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 466 atcatacatataaaattgatgatg 489
           |||||| |||||||||||||||||
Sbjct: 674 atcatatatataaaattgatgatg 697
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>ref|XM_480334.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3777

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 466  atcatacatataaaattgatgatg 489
            |||||| |||||||||||||||||
Sbjct: 2176 atcatatatataaaattgatgatg 2199
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>gb|AC162898.10| Mus musculus chromosome 5, clone RP23-391P21, complete sequence
          Length = 202279

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 596  atggaggcaagcattgagga 615
            ||||||||||||||||||||
Sbjct: 7654 atggaggcaagcattgagga 7635
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>gb|AY147790.1| Muilla maritima NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 2079

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1494 atacatataaaattgatgat 1513
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>gb|AY147788.1| Asparagus officinalis NADH dehydrogenase subunit F (ndhF) gene,
            partial cds; chloroplast gene for chloroplast product
          Length = 2082

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1493 atacatataaaattgatgat 1512
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>ref|XM_863894.1| PREDICTED: Bos taurus similar to Kinesin family member 21A
            (Kinesin-like protein KIF2) (NY-REN-62 antigen),
            transcript variant 2 (LOC540076), mRNA
          Length = 5973

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  gccactttatctgacatggg 171
            ||||||||||||||||||||
Sbjct: 2474 gccactttatctgacatggg 2455
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>ref|XM_591360.2| PREDICTED: Bos taurus similar to Kinesin family member 21A
            (Kinesin-like protein KIF2) (NY-REN-62 antigen),
            transcript variant 1 (LOC540076), mRNA
          Length = 5441

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  gccactttatctgacatggg 171
            ||||||||||||||||||||
Sbjct: 1942 gccactttatctgacatggg 1923
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>ref|XM_871694.1| PREDICTED: Bos taurus similar to Lymphocyte cytosolic protein 2
           (SH2 domain-containing leucocyte protein of 76 kDa)
           (SLP-76 tyrosine phosphoprotein) (SLP76), transcript
           variant 4 (LOC513244), mRNA
          Length = 1712

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 469 atacatataaaattgatgat 488
           ||||||||||||||||||||
Sbjct: 977 atacatataaaattgatgat 958
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>ref|XM_590899.2| PREDICTED: Bos taurus similar to Lymphocyte cytosolic protein 2 (SH2
            domain-containing leucocyte protein of 76 kDa) (SLP-76
            tyrosine phosphoprotein) (SLP76), transcript variant 2
            (LOC513244), mRNA
          Length = 2879

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 2144 atacatataaaattgatgat 2125
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>gb|DQ175967.1| Hordeum vulgare subsp. vulgare clone 40-21A-LB flanking T-DNA
           insertion sequence
          Length = 412

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 410 tctgcctgatacgagtgaaatcctgtacggct 441
           |||||||| |||||||| || |||||||||||
Sbjct: 345 tctgcctggtacgagtggaagcctgtacggct 376
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>gb|DQ175962.1| Hordeum vulgare subsp. vulgare clone 40-21A-LB flanking T-DNA
           insertion sequence
          Length = 412

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 410 tctgcctgatacgagtgaaatcctgtacggct 441
           |||||||| |||||||| || |||||||||||
Sbjct: 345 tctgcctggtacgagtggaagcctgtacggct 376
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>gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, complete sequence
          Length = 262048

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      tcttctgctgaacacagagc 27
              ||||||||||||||||||||
Sbjct: 163424 tcttctgctgaacacagagc 163405
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>gb|AC125166.3| Mus musculus BAC clone RP24-435J4 from chromosome 18, complete sequence
          Length = 174565

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 510    gaaatttcaaagaaaatcaa 529
              ||||||||||||||||||||
Sbjct: 116110 gaaatttcaaagaaaatcaa 116091
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>gb|AC144633.3| Mus musculus BAC clone RP23-26J4 from chromosome 7, complete sequence
          Length = 223362

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 425    tgaaatcctgtacggctatc 444
              ||||||||||||||||||||
Sbjct: 103922 tgaaatcctgtacggctatc 103903
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>gb|U79228.2|CCU79228 Cyanastrum cordifolium NADH dehydrogenase subunit F (ndhF) gene,
            partial cds; chloroplast gene for chloroplast product
          Length = 2083

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1494 atacatataaaattgatgat 1513
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>gb|AY368076.1| Homo sapiens kinesin family member 21A (KIF21A) mRNA, complete cds,
            alternatively spliced
          Length = 5044

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  gccactttatctgacatggg 171
            ||||||||||||||||||||
Sbjct: 2550 gccactttatctgacatggg 2531
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>gb|AC132233.4| Mus musculus BAC clone RP24-490D10 from chromosome 5, complete sequence
          Length = 160438

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 596    atggaggcaagcattgagga 615
              ||||||||||||||||||||
Sbjct: 144456 atggaggcaagcattgagga 144437
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>gb|AC132379.3| Mus musculus BAC clone RP23-412C9 from chromosome 1, complete sequence
          Length = 188978

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   ttgatgatgcttatgtcaag 500
             ||||||||||||||||||||
Sbjct: 13243 ttgatgatgcttatgtcaag 13224
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>gb|AF508403.1| Asparagus falcatus NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 2052

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1484 atacatataaaattgatgat 1503
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>gb|AF508393.1| Hyacinthus orientalis NADH dehydrogenase subunit F (ndhF) gene,
            partial cds; chloroplast gene for chloroplast product
          Length = 2054

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1486 atacatataaaattgatgat 1505
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>gb|AF508376.1| Muilla transmontana NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 2021

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1453 atacatataaaattgatgat 1472
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>gb|AF508375.1| Muilla maritima NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 2021

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1453 atacatataaaattgatgat 1472
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>gb|AF508373.1| Muilla clevelandii NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 2027

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1459 atacatataaaattgatgat 1478
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>gb|AC098730.3| Mus musculus BAC clone RP23-3J2 from 1, complete sequence
          Length = 226460

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    ttgatgatgcttatgtcaag 500
              ||||||||||||||||||||
Sbjct: 132301 ttgatgatgcttatgtcaag 132282
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>ref|NM_017641.2| Homo sapiens kinesin family member 21A (KIF21A), mRNA
          Length = 6335

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  gccactttatctgacatggg 171
            ||||||||||||||||||||
Sbjct: 2641 gccactttatctgacatggg 2622
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>gb|AF450487.1| Homo sapiens kinesin-like protein KIF2 mRNA, complete cds
          Length = 6338

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  gccactttatctgacatggg 171
            ||||||||||||||||||||
Sbjct: 2644 gccactttatctgacatggg 2625
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>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete
             sequence
          Length = 120132

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   cagaacattgaattgaatga 382
             ||||||||||||||||||||
Sbjct: 76273 cagaacattgaattgaatga 76292
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>emb|BX537855.1|HSM805954 Homo sapiens mRNA; cDNA DKFZp779N1963 (from clone DKFZp779N1963)
          Length = 4133

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 gccactttatctgacatggg 171
           ||||||||||||||||||||
Sbjct: 577 gccactttatctgacatggg 558
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>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09,
             complete sequence
          Length = 120583

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   aacattgaattgaatgacta 385
             ||||||||||||||||||||
Sbjct: 76023 aacattgaattgaatgacta 76042
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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
              complete sequence
          Length = 150864

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    aacattgaattgaatgacta 385
              ||||||||||||||||||||
Sbjct: 142836 aacattgaattgaatgacta 142855
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>gb|AC160977.2| Mus musculus BAC clone RP23-446C11 from chromosome 9, complete sequence
          Length = 168954

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    ccactttatctgacatggga 172
              ||||||||||||||||||||
Sbjct: 124428 ccactttatctgacatggga 124409
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>emb|CR859114.1| Pongo pygmaeus mRNA; cDNA DKFZp469O1020 (from clone DKFZp469O1020)
          Length = 2775

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 gccactttatctgacatggg 171
           ||||||||||||||||||||
Sbjct: 308 gccactttatctgacatggg 289
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>gb|AC090668.7| Homo sapiens 12 BAC RP11-791O13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 111375

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    gccactttatctgacatggg 171
              ||||||||||||||||||||
Sbjct: 102742 gccactttatctgacatggg 102723
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>gb|AC138014.36| Medicago truncatula clone mth2-17p13, complete sequence
          Length = 118388

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   ggattggataaaatgggata 588
             ||||||||||||||||||||
Sbjct: 57631 ggattggataaaatgggata 57612
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>emb|BX571940.12| Zebrafish DNA sequence from clone DKEY-171N3 in linkage group 14,
             complete sequence
          Length = 179550

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 508   cagaaatttcaaagaaaatc 527
             ||||||||||||||||||||
Sbjct: 72672 cagaaatttcaaagaaaatc 72653
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>gb|AF276022.1| Tricyrtis latifolia NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1975

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1432 atacatataaaattgatgat 1451
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>gb|AF276021.1| Tricyrtis affinis NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1984

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  atacatataaaattgatgat 488
            ||||||||||||||||||||
Sbjct: 1432 atacatataaaattgatgat 1451
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>dbj|AK040173.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430072H19 product:hypothetical protein,
           full insert sequence
          Length = 1750

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 596 atggaggcaagcattgagga 615
           ||||||||||||||||||||
Sbjct: 969 atggaggcaagcattgagga 950
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>gb|AC102298.14| Mus musculus chromosome 7, clone RP24-396N13, complete sequence
          Length = 187811

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    tgaaatcctgtacggctatc 444
              ||||||||||||||||||||
Sbjct: 168278 tgaaatcctgtacggctatc 168297
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 366      aacattgaattgaatgacta 385
                ||||||||||||||||||||
Sbjct: 24253611 aacattgaattgaatgacta 24253630
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    atataaaattgatgatgctt 492
              ||||||||||||||||||||
Sbjct: 582518 atataaaattgatgatgctt 582499
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 466     atcatacatataaaattgatgatg 489
               |||||| |||||||||||||||||
Sbjct: 4404406 atcatatatataaaattgatgatg 4404383



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 466     atcatacatataaaattgatgatg 489
               |||||| |||||||||||||||||
Sbjct: 4388773 atcatatatataaaattgatgatg 4388750
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>gb|AC133521.3| Mus musculus BAC clone RP23-189F22 from chromosome 12, complete
             sequence
          Length = 219682

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 511   aaatttcaaagaaaatcaagtgga 534
             ||||| ||||||||||||||||||
Sbjct: 49058 aaattacaaagaaaatcaagtgga 49035
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>ref|NM_001004179.1| Mus musculus hypothetical gene supported by AK040173 (LOC433873),
           mRNA
          Length = 1750

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 596 atggaggcaagcattgagga 615
           ||||||||||||||||||||
Sbjct: 969 atggaggcaagcattgagga 950
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>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0054L03
          Length = 183623

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 466    atcatacatataaaattgatgatg 489
              |||||| |||||||||||||||||
Sbjct: 167200 atcatatatataaaattgatgatg 167177



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 466    atcatacatataaaattgatgatg 489
              |||||| |||||||||||||||||
Sbjct: 151567 atcatatatataaaattgatgatg 151544
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>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_B10
          Length = 115074

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 466   atcatacatataaaattgatgatg 489
             |||||| |||||||||||||||||
Sbjct: 51582 atcatatatataaaattgatgatg 51559



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 466   atcatacatataaaattgatgatg 489
             |||||| |||||||||||||||||
Sbjct: 35949 atcatatatataaaattgatgatg 35926
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>dbj|AK103236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123F03, full
            insert sequence
          Length = 3777

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 466  atcatacatataaaattgatgatg 489
            |||||| |||||||||||||||||
Sbjct: 2176 atcatatatataaaattgatgatg 2199
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>dbj|AK064462.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-G06, full
           insert sequence
          Length = 1787

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 466 atcatacatataaaattgatgatg 489
           |||||| |||||||||||||||||
Sbjct: 720 atcatatatataaaattgatgatg 743
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>dbj|AK058766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-D09, full
           insert sequence
          Length = 273

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 aacattgaattgaatgacta 385
           ||||||||||||||||||||
Sbjct: 248 aacattgaattgaatgacta 267
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>emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811E11, complete
             sequence
          Length = 59348

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   aacattgaattgaatgacta 385
             ||||||||||||||||||||
Sbjct: 48167 aacattgaattgaatgacta 48186
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>dbj|AB051495.2| Homo sapiens KIAA1708 mRNA, partial cds
          Length = 6170

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  gccactttatctgacatggg 171
            ||||||||||||||||||||
Sbjct: 2484 gccactttatctgacatggg 2465
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    atataaaattgatgatgctt 492
              ||||||||||||||||||||
Sbjct: 582518 atataaaattgatgatgctt 582499
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>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 115859

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   atataaaattgatgatgctt 492
             ||||||||||||||||||||
Sbjct: 66325 atataaaattgatgatgctt 66344
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>emb|AM177179.1| Homo sapiens mRNA for kinesin-like protein KIF21A variant (KIF21A
            gene)
          Length = 4866

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  gccactttatctgacatggg 171
            ||||||||||||||||||||
Sbjct: 2426 gccactttatctgacatggg 2407
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>gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone rp23-159l13, complete
              sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 466    atcatacatataaaattgatgatg 489
              ||||||||||||||| ||||||||
Sbjct: 135213 atcatacatataaaaatgatgatg 135190
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>dbj|AB047689.2| Oryza sativa mRNA for PolI-like DNA polymerase, complete cds
          Length = 3765

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 466  atcatacatataaaattgatgatg 489
            |||||| |||||||||||||||||
Sbjct: 2160 atcatatatataaaattgatgatg 2183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,305,776
Number of Sequences: 3902068
Number of extensions: 5305776
Number of successful extensions: 110983
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110758
Number of HSP's gapped (non-prelim): 225
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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