Clone Name	bah62i08
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	674	0.0
2	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	664	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	613	e-172
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	500	e-138
5	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	278	1e-71
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	258	1e-65
7	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	238	1e-59
8	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	238	1e-59
9	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	238	1e-59
10	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	238	1e-59
11	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	238	1e-59
12	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	238	1e-59
13	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	238	1e-59
14	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	230	2e-57
15	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	212	6e-52
16	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	212	6e-52
17	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	165	1e-37
18	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	165	1e-37
19	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	165	1e-37
20	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	165	1e-37
21	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	129	7e-27
22	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	125	1e-25
23	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	107	2e-20
24	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	100	6e-18
25	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	100	6e-18
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	100	6e-18
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	64	3e-07
28	gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precurso...	56	8e-05
29	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	54	3e-04
30	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	54	3e-04
31	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	50	0.005
32	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	48	0.020
33	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	46	0.078
34	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	46	0.078
35	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	46	0.078
36	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	46	0.078
37	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	46	0.078
38	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	46	0.078
39	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	46	0.078
40	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	46	0.078
41	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	46	0.078
42	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	46	0.078
43	emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphospha...	46	0.078
44	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	46	0.078
45	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.078
46	gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome	44	0.31
47	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.31
48	gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase m...	44	0.31
49	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	1.2
50	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	4.8
51	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	4.8
52	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	40	4.8
53	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	4.8
54	ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot...	40	4.8
55	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	4.8
56	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	4.8
57	ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	4.8
58	gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, com...	40	4.8
59	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	4.8
60	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	40	4.8
61	gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com...	40	4.8
62	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	4.8
63	gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana...	40	4.8
64	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	4.8
65	emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chr...	40	4.8
66	gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana...	40	4.8
67	gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple...	40	4.8
68	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	4.8
69	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	40	4.8

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  674 bits (340), Expect = 0.0
 Identities = 355/361 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggggctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cggggctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgac 227

                                                                       
Query: 61  ctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagc 287

                                                                       
Query: 121 ggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 288 ggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgctaccgatatctc 347

                                                                       
Query: 181 cgacgaccagcaggacatcaccagagggaagggcatcgnggactcgctcttccaggcgcc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 348 cgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcc 407

                                                                       
Query: 241 cacgggcgacggcacccacgaggccgtnctcagctcctacgagtacgtcagccagggcct 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 408 cacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcct 467

                                                                       
Query: 301 gcggaagtacgacttcnacaacaccatgggaggcttctacatcgctcctgctttcatgga 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatgga 527

            
Query: 361 c 361
           |
Sbjct: 528 c 528

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  664 bits (335), Expect = 0.0
 Identities = 347/352 (98%)
 Strand = Plus / Plus

                                                                        
Query: 10   ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 69
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 70   gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637

                                                                        
Query: 130  cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697

                                                                        
Query: 190  gcaggacatcaccagagggaagggcatcgnggactcgctcttccaggcgcccacgggcga 249
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |
Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757

                                                                        
Query: 250  cggcacccacgaggccgtnctcagctcctacgagtacgtcagccagggcctgcggaagta 309
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817

                                                                
Query: 310  cgacttcnacaacaccatgggaggcttctacatcgctcctgctttcatggac 361
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggac 5869



 Score =  212 bits (107), Expect = 6e-52
 Identities = 158/176 (89%)
 Strand = Plus / Plus

                                                                        
Query: 154  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 213
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                        
Query: 214  catcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtnctcag 273
            ||||| |||||| || |||||||| |||| |||||||||||||||||||||| | || ||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058

                                                                    
Query: 274  ctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatgg 329
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatgg 3114

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  613 bits (309), Expect = e-172
 Identities = 342/354 (96%)
 Strand = Plus / Plus

                                                                       
Query: 8   ccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggcc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggcc 154

                                                                       
Query: 68  gtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaac 127
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 155 gtgaactaccatggcaagagctccaaggccaacaggttcacggtcatggcagcggaaaac 214

                                                                       
Query: 128 atcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgac 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgac 274

                                                                       
Query: 188 cagcaggacatcaccagagggaagggcatcgnggactcgctcttccaggcgcccacgggc 247
           ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct: 275 cagcaggacatcaccagagggaagggcatcgtggactccctcttccaggcgcccactggc 334

                                                                       
Query: 248 gacggcacccacgaggccgtnctcagctcctacgagtacgtcagccagggcctgcggaag 307
           |||||||||||||||||||| |||||||| |||||||||||||||||||| ||   ||||
Sbjct: 335 gacggcacccacgaggccgtcctcagctcatacgagtacgtcagccagggactcaagaag 394

                                                                 
Query: 308 tacgacttcnacaacaccatgggaggcttctacatcgctcctgctttcatggac 361
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggac 448

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  500 bits (252), Expect = e-138
 Identities = 267/273 (97%)
 Strand = Plus / Plus

                                                                       
Query: 89  tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           |||||||||||||||||||||||||||||||||
Sbjct: 241 ggaggcttctacatcgctcctgctttcatggac 273

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  278 bits (140), Expect = 1e-71
 Identities = 194/213 (91%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           ||||| ||||  ||||| || ||||||||||||| |||||| ||||||||||||||||| 
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           ||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||
Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| || ||||||||||||
Sbjct: 437 ggaggcttctacatcgccccggctttcatggac 469



 Score =  168 bits (85), Expect = 8e-39
 Identities = 106/113 (93%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           ||||||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct: 110 gctccggcttccacgccgaccagcttcctcggcaacaagctcaagaagcaggtgacctcg 169

                                                                
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggc 117
           || |||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 170 gcagtgaactaccatggcaagagcttcaaggccaacaggttcaccgtcatggc 222

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  258 bits (130), Expect = 1e-65
 Identities = 191/213 (89%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           ||||| ||||  |||||  | ||||||||||||| |||||| || |||||||||||||| 
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||| |||||||||||||||||||||||   ||||||||||||| |||||||||||
Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| || ||||||||||||
Sbjct: 427 ggaggcttctacatcgccccggctttcatggac 459



 Score =  163 bits (82), Expect = 5e-37
 Identities = 105/113 (92%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           ||||||||||| ||||| |||| ||||||||| || ||||||||||||||||||||||||
Sbjct: 100 gctccggcttccacgccnaccagcttcctcggcaacaagctcaagaagcaggtgacctcg 159

                                                                
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttcacagtcatggc 117
           || |||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 160 gcagtgaactaccatggcaagagcttcaaggccaacaggttcaccgtcatggc 212

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  238 bits (120), Expect = 1e-59
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||
Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| |||||||||||||||
Sbjct: 384 ggaggcttctacatcgcccctgctttcatggac 416



 Score =  125 bits (63), Expect = 1e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 57  gctccggcgtccactccgaccaacttcctggggaagaagctgaagaagcaggtgacatcg 116

                                                      
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttca 107
           || ||||||||||||||||||||||||||   |||||||||||
Sbjct: 117 gcggtgaactaccatggcaagagctccaacatcaacaggttca 159

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  238 bits (120), Expect = 1e-59
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||
Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| |||||||||||||||
Sbjct: 432 ggaggcttctacatcgcccctgctttcatggac 464



 Score =  125 bits (63), Expect = 1e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 105 gctccggcgtccactccgaccaacttcctggggaagaagctgaagaagcaggtgacatcg 164

                                                      
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttca 107
           || ||||||||||||||||||||||||||   |||||||||||
Sbjct: 165 gcggtgaactaccatggcaagagctccaacatcaacaggttca 207

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  238 bits (120), Expect = 1e-59
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||
Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| |||||||||||||||
Sbjct: 421 ggaggcttctacatcgcccctgctttcatggac 453



 Score =  125 bits (63), Expect = 1e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 94  gctccggcgtccactccgaccaacttcctggggaagaagctgaagaagcaggtgacatcg 153

                                                      
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttca 107
           || ||||||||||||||||||||||||||   |||||||||||
Sbjct: 154 gcggtgaactaccatggcaagagctccaacatcaacaggttca 196

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  238 bits (120), Expect = 1e-59
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||
Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| |||||||||||||||
Sbjct: 420 ggaggcttctacatcgcccctgctttcatggac 452



 Score =  125 bits (63), Expect = 1e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 93  gctccggcgtccactccgaccaacttcctggggaagaagctgaagaagcaggtgacatcg 152

                                                      
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttca 107
           || ||||||||||||||||||||||||||   |||||||||||
Sbjct: 153 gcggtgaactaccatggcaagagctccaacatcaacaggttca 195

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  238 bits (120), Expect = 1e-59
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||
Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaggcttctacatcgcccctgctttcatggac 236

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  238 bits (120), Expect = 1e-59
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||
Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| |||||||||||||||
Sbjct: 425 ggaggcttctacatcgcccctgctttcatggac 457



 Score =  117 bits (59), Expect = 3e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           |||||||| || || |||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct: 98  gctccggcgtccactccgaccaacttcctggggaagaagctgaaaaagcaggtgacatcg 157

                                                      
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttca 107
           || ||||||||||||||||||||||||||   |||||||||||
Sbjct: 158 gcggtgaactaccatggcaagagctccaacatcaacaggttca 200

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  238 bits (120), Expect = 1e-59
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||
Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| |||||||||||||||
Sbjct: 419 ggaggcttctacatcgcccctgctttcatggac 451



 Score =  125 bits (63), Expect = 1e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 92  gctccggcgtccactccgaccaacttcctggggaagaagctgaagaagcaggtgacatcg 151

                                                      
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttca 107
           || ||||||||||||||||||||||||||   |||||||||||
Sbjct: 152 gcggtgaactaccatggcaagagctccaacatcaacaggttca 194

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  230 bits (116), Expect = 2e-57
 Identities = 188/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

                                                                       
Query: 269 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatg 328
           |||||||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||
Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391

                                            
Query: 329 ggaggcttctacatcgctcctgctttcatggac 361
           ||||||||||||||||| ||| |||||||||||
Sbjct: 392 ggaggcttctacatcgccccttctttcatggac 424



 Score =  125 bits (63), Expect = 1e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 65  gctccggcgtccactccgaccaacttcctggggaagaagctgaagaagcaggtgacatcg 124

                                                      
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttca 107
           || ||||||||||||||||||||||||||   |||||||||||
Sbjct: 125 gcggtgaactaccatggcaagagctccaacatcaacaggttca 167

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  212 bits (107), Expect = 6e-52
 Identities = 158/176 (89%)
 Strand = Plus / Plus

                                                                       
Query: 154 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 213
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                       
Query: 214 catcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtnctcag 273
           ||||| |||||| || |||||||| |||| |||||||||||||||||||||| | || ||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336

                                                                   
Query: 274 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatgg 329
           ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatgg 392



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcagg 56
           |||||||| || || ||||||| |||||||||||||||| | ||||||||||
Sbjct: 56  gctccggcgtcgaccccgaccaccttcctcgggaagaaggtgaagaagcagg 107

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  212 bits (107), Expect = 6e-52
 Identities = 158/176 (89%)
 Strand = Plus / Plus

                                                                       
Query: 154 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 213
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                       
Query: 214 catcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtnctcag 273
           ||||| |||||| || |||||||| |||| |||||||||||||||||||||| | || ||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489

                                                                   
Query: 274 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatgg 329
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatgg 545

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                          
Query: 149    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 209    aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
              |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                                           
Query: 269    ctcagctcctacgagtacgtcagccaggg 297
              |||||||||||||||||| ||||||||||
Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558



 Score =  119 bits (60), Expect = 6e-24
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                          
Query: 154    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 213
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 214    catcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 264
              | |||  ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 20     ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 79
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 80     ggcaagagctccaaggccaacaggttca 107
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                     
Query: 307    gtacgacttcnacaacaccatgggaggcttctacatcgctcctgctttcatggac 361
              |||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggac 109381

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                         
Query: 149   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 209   aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
             |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

                                          
Query: 269   ctcagctcctacgagtacgtcagccaggg 297
             |||||||||||||||||| ||||||||||
Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435



 Score =  119 bits (60), Expect = 6e-24
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                         
Query: 154   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 213
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 214   catcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 264
             | |||  ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 20    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 79
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 80    ggcaagagctccaaggccaacaggttca 107
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                    
Query: 307   gtacgacttcnacaacaccatgggaggcttctacatcgctcctgctttcatggac 361
             |||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggac 31258

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                            
Query: 149      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 209      aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
                |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                                             
Query: 269      ctcagctcctacgagtacgtcagccaggg 297
                |||||||||||||||||| ||||||||||
Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697



 Score =  119 bits (60), Expect = 6e-24
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                            
Query: 154      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 213
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 214      catcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 264
                | |||  ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 20       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 79
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 80       ggcaagagctccaaggccaacaggttca 107
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                       
Query: 307      gtacgacttcnacaacaccatgggaggcttctacatcgctcctgctttcatggac 361
                |||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggac 28304520

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  165 bits (83), Expect = 1e-37
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                            
Query: 149      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 209      aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
                |||||  |||  ||||| || |||||||| |||||||| || ||||||||||||||||| 
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                                             
Query: 269      ctcagctcctacgagtacgtcagccaggg 297
                |||||||||||||||||| ||||||||||
Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146



 Score =  119 bits (60), Expect = 6e-24
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                            
Query: 154      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 213
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 214      catcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 264
                | |||  ||||| || |||||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 20       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 79
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 80       ggcaagagctccaaggccaacaggttca 107
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                       
Query: 307      gtacgacttcnacaacaccatgggaggcttctacatcgctcctgctttcatggac 361
                |||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggac 28286969

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  129 bits (65), Expect = 7e-27
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||| |||  |||   |||||||||||||| | ||| |||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332

                                          
Query: 269 ctcagctcctacgagtacgtcagccagggcc 299
           |||||||||||||| ||| ||||||||||||
Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 61/68 (89%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                       
Query: 28  cttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaa 84
           ||||||||||||||||||||| ||||   ||||| || ||||||||| ||||||||||||
Sbjct: 80  cttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaa 139

                   
Query: 85  gagctcca 92
           ||||||||
Sbjct: 140 gagctcca 147

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  125 bits (63), Expect = 1e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 5   gctccggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcg 64
           |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 93  gctccggcgtccactccgaccaacttcctggggaagaagctgaagaagcaggtgacatcg 152

                                                      
Query: 65  gccgtgaactaccatggcaagagctccaaggccaacaggttca 107
           || ||||||||||||||||||||||||||   |||||||||||
Sbjct: 153 gcggtgaactaccatggcaagagctccaacatcaacaggttca 195



 Score =  115 bits (58), Expect = 1e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                       
Query: 273 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatgggag 332
           |||||||||||||| |||||||||| ||  | | |||||||||| |||||||||||||||
Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386

                                        
Query: 333 gcttctacatcgctcctgctttcatggac 361
           ||||||||||||| |||||||||||||||
Sbjct: 387 gcttctacatcgcccctgctttcatggac 415



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 209 aagggcatcgnggactcgctcttccaggc 237
           |||||  |||  ||||| || ||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score =  107 bits (54), Expect = 2e-20
 Identities = 125/151 (82%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 208
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 209 aagggcatcgnggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtn 268
           |||||| |||  |||   |||||||||||||| |      ||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332

                                          
Query: 269 ctcagctcctacgagtacgtcagccagggcc 299
           |||||||||||||| ||| ||||||||||||
Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 61/68 (89%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                       
Query: 28  cttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaa 84
           ||||||||||||||||||||| ||||   ||||| || ||||||||| ||||||||||||
Sbjct: 80  cttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaa 139

                   
Query: 85  gagctcca 92
           ||||||||
Sbjct: 140 gagctcca 147

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 93/108 (86%)
 Strand = Plus / Plus

                                                                       
Query: 185 gaccagcaggacatcaccagagggaagggcatcgnggactcgctcttccaggcgcccacg 244
           |||||||||||||||||||| ||||||||||| |  ||||| || |||||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                                                           
Query: 245 ggcgacggcacccacgaggccgtnctcagctcctacgagtacgtcagc 292
           |||||||| |||||| |  |||| || ||||||||||||||| |||||
Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 342

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 93/108 (86%)
 Strand = Plus / Plus

                                                                       
Query: 185 gaccagcaggacatcaccagagggaagggcatcgnggactcgctcttccaggcgcccacg 244
           |||||||||||||||||||| ||||||||||| |  ||||| || |||||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                                                           
Query: 245 ggcgacggcacccacgaggccgtnctcagctcctacgagtacgtcagc 292
           |||||||| |||||| |  |||| || ||||||||||||||| |||||
Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 205

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 93/108 (86%)
 Strand = Plus / Plus

                                                                       
Query: 185 gaccagcaggacatcaccagagggaagggcatcgnggactcgctcttccaggcgcccacg 244
           |||||||||||||||||||| ||||||||||| |  ||||| || |||||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                                                           
Query: 245 ggcgacggcacccacgaggccgtnctcagctcctacgagtacgtcagc 292
           |||||||| |||||| |  |||| || ||||||||||||||| |||||
Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 235

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 155 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 210
           |||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335

---

>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete
           cds
          Length = 1674

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 275 tcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatgggaggc 334
           |||||||| ||||||||||| || || ||  ||||| ||||  ||||||   |||  || 
Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455

                                      
Query: 335 ttctacatcgctcctgctttcatggac 361
           |||||||||||||||||||||||||||
Sbjct: 456 ttctacatcgctcctgctttcatggac 482

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 335 ttctacatcgctcctgctttcatggac 361
           |||||||||||||||||||||||||||
Sbjct: 473 ttctacatcgctcctgctttcatggac 499

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 155 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 213
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 178 ctccgacgaccagcaggacatcaccagagggaagggcatcgnggactcgctcttccaggc 237
           |||||||||||| || |||||||| ||||| ||||| |  | |||||| |||||||||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 318 acaacaccatgggaggcttctacatcgctcctgctttcatggac 361
           |||||| |||||  || ||||||||||||||||| |||||||||
Sbjct: 258 acaacaacatggatggtttctacatcgctcctgcattcatggac 301

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 502 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 561

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 562 gggttttacattgctcctgctttcatggac 591

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 502 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 561

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 562 gggttttacattgctcctgctttcatggac 591

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
           transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 531 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 590

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 591 gggttttacattgctcctgctttcatggac 620

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
           (At2g39730) mRNA, complete cds
          Length = 1697

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 413 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 472

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 473 gggttttacattgctcctgctttcatggac 502

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 328 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 387

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 388 gggttttacattgctcctgctttcatggac 417

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 416 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 475

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 476 gggttttacattgctcctgctttcatggac 505

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 405 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 464

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 465 gggttttacattgctcctgctttcatggac 494

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 413 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 472

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 473 gggttttacattgctcctgctttcatggac 502

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete
           cds
          Length = 1674

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 416 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 475

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 476 gggttttacattgctcctgctttcatggac 505

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 531 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 590

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 591 gggttttacattgctcctgctttcatggac 620

---

>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase
           (pJQ4)
          Length = 1655

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 335 ttctacatcgctcctgctttcatggac 361
           ||||||||||||||| |||||||||||
Sbjct: 426 ttctacatcgctccttctttcatggac 452

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcnacaacaccatggga 331
           ||||| ||||| ||||| ||||| |||||  || ||||| ||||  ||||||  ||||  
Sbjct: 397 agctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatgatggat 456

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           || || ||||| ||||||||||||||||||
Sbjct: 457 gggttttacattgctcctgctttcatggac 486

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 180     ccgacgaccagcaggacatcacc 202
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 222     actcgctcttccaggcgcccac 243
               ||||||||||||||||||||||
Sbjct: 2553524 actcgctcttccaggcgcccac 2553503

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 37     gaagaagctcaagaagcaggtg 58
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978

---

>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds
          Length = 1656

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 332 ggcttctacatcgctcctgctttcatggac 361
           ||||||||||| || |||||||||||||||
Sbjct: 434 ggcttctacattgcccctgctttcatggac 463

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 332  ggcttctacatcgctcctgctttcatgga 360
            |||||||||||| ||||||||||| ||||
Sbjct: 1128 ggcttctacatctctcctgctttcctgga 1156

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 112     catggcagcggagaacatcg 131
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 176  atctccgacgaccagcaggacatc 199
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    gcagcggagaacatcgacga 135
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 239  cccacgggcgacggcacccacgag 262
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   gcaagagctccaaggccaac 100
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 112     catggcagcggagaacatcg 131
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 239 cccacgggcgacggcacccacgag 262
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   gaagaagctcaagaagcagg 56
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404

---

>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence
          Length = 193170

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 332    ggcttctacatcgctcctgctttc 355
              ||||||| ||||||||||||||||
Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 239    cccacgggcgacggcacccacgag 262
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   tacatcgctcctgctttcatggac 361
             ||||| ||||||||||||||||||
Sbjct: 14910 tacattgctcctgctttcatggac 14887

---

>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   gcaagagctccaaggccaac 100
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 239 cccacgggcgacggcacccacgag 262
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
             V, complete sequence
          Length = 130299

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    caaggccaacaggttcacagtcat 114
             ||||||||||||||||| ||||||
Sbjct: 13824 caaggccaacaggttcagagtcat 13847

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     cgatatctccgacgaccagc 191
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete
              sequence
          Length = 219072

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 332    ggcttctacatcgctcctgctttc 355
              ||||||| ||||||||||||||||
Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848

---

>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 91    caaggccaacaggttcacagtcat 114
             ||||||||||||||||| ||||||
Sbjct: 27506 caaggccaacaggttcagagtcat 27483

---

>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aagaagctcaagaagcaggt 57
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650

---

>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 239 cccacgggcgacggcacccacgag 262
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 338  tacatcgctcctgctttcatggac 361
            ||||| ||||||||||||||||||
Sbjct: 2373 tacattgctcctgctttcatggac 2396


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,300,628
Number of Sequences: 3902068
Number of extensions: 2300628
Number of successful extensions: 40360
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40075
Number of HSP's gapped (non-prelim): 281
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---