ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah62h19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105536.1| Zea mays PCO106687 mRNA sequence 264 3e-67
2ref|XM_480362.1| Oryza sativa (japonica cultivar-group), mRNA 167 5e-38
3dbj|AK066600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 5e-38
4gb|AY106320.1| Zea mays PCO122712 mRNA sequence 105 2e-19
5gb|BT009326.1| Triticum aestivum clone wlm24.pk0016.f9:fis, full... 100 1e-17
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
7dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
8dbj|AP004590.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
9gb|DQ237915.1| Oryza sativa (indica cultivar-group) diacylglycer... 82 2e-12
10ref|XM_474019.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
11dbj|AK100906.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
12emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4,... 66 1e-07
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
14emb|AL732338.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 66 1e-07
15gb|BT013146.1| Lycopersicon esculentum clone 134141F, mRNA sequence 44 0.50
16gb|AC146092.2| Pan troglodytes BAC clone RP43-48I3 from 7, compl... 42 2.0
17gb|AC152064.3| Pan troglodytes BAC clone RP43-134I6 from chromos... 42 2.0
18emb|CR589950.13| Zebrafish DNA sequence from clone DKEY-166L1 in... 42 2.0
19emb|BX663498.9| Zebrafish DNA sequence from clone DKEYP-97G3 in ... 42 2.0
20gb|AY653977.1| Hepatitis C virus isolate 1507 genotype 3 NS5B pr... 42 2.0
21gb|AY653961.1| Hepatitis C virus isolate 955 genotype 3 NS5B pro... 42 2.0
22emb|AL954746.8| Zebrafish DNA sequence from clone DKEY-10P5, com... 42 2.0
23ref|NM_206933.1| Homo sapiens Usher syndrome 2A (autosomal reces... 40 7.8
24gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 40 7.8
25gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
26gb|AY481573.1| Homo sapiens Usher syndrome 2A isoform B (USH2A) ... 40 7.8
27emb|AL365315.8| Human DNA sequence from clone RP11-275K8 on chro... 40 7.8
28emb|AJ507278.1|HEC507278 Hepatitis C virus partial gene for NS5B... 40 7.8
29dbj|AB204658.1| Hepatitis C virus NS5B gene for polyprotein, par... 40 7.8
30gb|AC113412.2| Homo sapiens chromosome 5 clone RP11-509M23, comp... 40 7.8
31gb|AC092799.2| Homo sapiens chromosome 1 clone RP11-5F19, comple... 40 7.8
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
33gb|AE009723.1| Brucella melitensis 16M chromosome II, section 85... 40 7.8
34gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 7.8
35gb|AC083892.19| Mus musculus strain C57BL/6J chromosome 1 clone ... 40 7.8
36gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complet... 40 7.8
37emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 40 7.8
38dbj|AB081069.1| Hepatitis C virus gene for polyprotein (NS5B reg... 40 7.8
39gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8 
>gb|AY105536.1| Zea mays PCO106687 mRNA sequence
          Length = 1925

 Score =  264 bits (133), Expect = 3e-67
 Identities = 286/337 (84%)
 Strand = Plus / Plus

                                                                       
Query: 236 ccatgtgggcctttggaggagtaccgcattccagattacatcttgagaccagatgcccaa 295
           |||||||||||| ||||||| |||  |||||||||||||||  |||  |||| |||||||
Sbjct: 218 ccatgtgggcctctggaggactactacattccagattacattctgaagccaggtgcccaa 277

                                                                       
Query: 296 caagtaattgttgatcatgctccacagtgtcctgtaatagtgttcatcaattctaaatct 355
           |||||| |||||||||||||  |||  || || ||  ||||||||||||| || | ||||
Sbjct: 278 caagtacttgttgatcatgcggcaccctgccccgttgtagtgttcatcaactcaagatct 337

                                                                       
Query: 356 ggcggccaacttggaagtagtttgatcaaaacataccgtgaacttctgaacgaagcccag 415
           || |||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| |||
Sbjct: 338 ggaggccaacttggaagtagtttaatcaaaacatatcgtgagcttctcaatgaagcacag 397

                                                                       
Query: 416 gttattgatctctctgaagaggctccggataaggttttgcaccgtttatatgtgaatgtt 475
           ||| ||||||||||  |||||||||| |||||||| ||||| ||||||||||  ||  ||
Sbjct: 398 gtttttgatctctcaaaagaggctccagataaggtattgcatcgtttatatgccaacctt 457

                                                                       
Query: 476 gaaaggctcaagattgaaggcgacattcttgccgttcaaatttggagaactatgagatta 535
           |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||  ||||  ||
Sbjct: 458 gaaaggctgaagatggaaggagacattcttgcagttcaaatttggaggacactgaggcta 517

                                                
Query: 536 attgttgcaggtggcgatggtacagcgagttggctgc 572
           ||||||||||| || ||||||||||| || |||||||
Sbjct: 518 attgttgcaggcggtgatggtacagctagctggctgc 554
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>ref|XM_480362.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1941

 Score =  167 bits (84), Expect = 5e-38
 Identities = 258/316 (81%)
 Strand = Plus / Plus

                                                                       
Query: 257 taccgcattccagattacatcttgagaccagatgcccaacaagtaattgttgatcatgct 316
           ||||||||||| ||||||||| |||| || ||||| || |  ||  || |||||||||| 
Sbjct: 238 taccgcattccggattacatcctgaggccggatgcgcagcgggtgcttcttgatcatgcg 297

                                                                       
Query: 317 ccacagtgtcctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagt 376
           || | ||| || ||  | |||||||||||||||  |||||| || || || || || || 
Sbjct: 298 cccccgtgccccgtgctggtgttcatcaattctggatctggtggtcagctcgggagcagc 357

                                                                       
Query: 377 ttgatcaaaacataccgtgaacttctgaacgaagcccaggttattgatctctctgaagag 436
            |||||||||| ||||||||||||||    ||||| |||||| | ||| |||| ||||||
Sbjct: 358 ctgatcaaaacctaccgtgaacttctcggtgaagcgcaggttttcgatgtctccgaagag 417

                                                                       
Query: 437 gctccggataaggttttgcaccgtttatatgtgaatgttgaaaggctcaagattgaaggc 496
           ||||||||||| || |||||||||||  |||| ||  |||| | ||||||||| || || 
Sbjct: 418 gctccggataaagtgttgcaccgtttgaatgtcaaccttgagaagctcaagatggatgga 477

                                                                       
Query: 497 gacattcttgccgttcaaatttggagaactatgagattaattgttgcaggtggcgatggt 556
           ||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 478 gacattcttgctgttcaaatttggagaactctcagaataattgttgcaggtggcgatggt 537

                           
Query: 557 acagcgagttggctgc 572
           || || || |||||||
Sbjct: 538 acggcaagctggctgc 553
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>dbj|AK066600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I18, full
           insert sequence
          Length = 1940

 Score =  167 bits (84), Expect = 5e-38
 Identities = 258/316 (81%)
 Strand = Plus / Plus

                                                                       
Query: 257 taccgcattccagattacatcttgagaccagatgcccaacaagtaattgttgatcatgct 316
           ||||||||||| ||||||||| |||| || ||||| || |  ||  || |||||||||| 
Sbjct: 237 taccgcattccggattacatcctgaggccggatgcgcagcgggtgcttcttgatcatgcg 296

                                                                       
Query: 317 ccacagtgtcctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagt 376
           || | ||| || ||  | |||||||||||||||  |||||| || || || || || || 
Sbjct: 297 cccccgtgccccgtgctggtgttcatcaattctggatctggtggtcagctcgggagcagc 356

                                                                       
Query: 377 ttgatcaaaacataccgtgaacttctgaacgaagcccaggttattgatctctctgaagag 436
            |||||||||| ||||||||||||||    ||||| |||||| | ||| |||| ||||||
Sbjct: 357 ctgatcaaaacctaccgtgaacttctcggtgaagcgcaggttttcgatgtctccgaagag 416

                                                                       
Query: 437 gctccggataaggttttgcaccgtttatatgtgaatgttgaaaggctcaagattgaaggc 496
           ||||||||||| || |||||||||||  |||| ||  |||| | ||||||||| || || 
Sbjct: 417 gctccggataaagtgttgcaccgtttgaatgtcaaccttgagaagctcaagatggatgga 476

                                                                       
Query: 497 gacattcttgccgttcaaatttggagaactatgagattaattgttgcaggtggcgatggt 556
           ||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 477 gacattcttgctgttcaaatttggagaactctcagaataattgttgcaggtggcgatggt 536

                           
Query: 557 acagcgagttggctgc 572
           || || || |||||||
Sbjct: 537 acggcaagctggctgc 552
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>gb|AY106320.1| Zea mays PCO122712 mRNA sequence
          Length = 1753

 Score =  105 bits (53), Expect = 2e-19
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                       
Query: 359 ggccaacttggaagtagtttgatcaaaacataccgtgaacttctgaacgaagcccaggtt 418
           |||||||| ||||| ||| ||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 221 ggccaactgggaagcagtctgatcaaaacataccgtgaacttctcaatgaagcgcaggtt 280

                                            
Query: 419 attgatctctctgaagaggctccggataaggtt 451
            |||||||||| |||||| |||| |||||||||
Sbjct: 281 tttgatctctcagaagagtctcctgataaggtt 313
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>gb|BT009326.1| Triticum aestivum clone wlm24.pk0016.f9:fis, full insert mRNA
           sequence
          Length = 1957

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                       
Query: 359 ggccaacttggaagtagtttgatcaaaacataccgtgaacttctgaacgaagcccaggtt 418
           ||||||||||||||| ||||||||||| ||||||||||| |||| || ||||| ||||||
Sbjct: 260 ggccaacttggaagtggtttgatcaaatcataccgtgaagttctcaatgaagcacaggtt 319

                             
Query: 419 attgatctctctgaagag 436
            |||||||||||||||||
Sbjct: 320 tttgatctctctgaagag 337
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                           
Query: 413     caggttattgatctctctgaagaggctccggataaggttttgcaccgtttatatgtgaat 472
               |||||| | ||| |||| ||||||||||||||||| || |||||||||||  |||| || 
Sbjct: 4597590 caggttttcgatgtctccgaagaggctccggataaagtgttgcaccgtttgaatgtcaac 4597531

                                                                           
Query: 473     gttgaaaggctcaagattgaaggcgacattcttgccgttcaaatttggagaactatgaga 532
                |||| | ||||||||| || || ||||||||||| |||||||||||||||||| | |||
Sbjct: 4597530 cttgagaagctcaagatggatggagacattcttgctgttcaaatttggagaactctcaga 4597471

                       
Query: 533     ttaattgt 540
                |||||||
Sbjct: 4597470 ataattgt 4597463



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 116/146 (79%)
 Strand = Plus / Minus

                                                                           
Query: 257     taccgcattccagattacatcttgagaccagatgcccaacaagtaattgttgatcatgct 316
               ||||||||||| ||||||||| |||| || ||||| || |  ||  || |||||||||| 
Sbjct: 4597857 taccgcattccggattacatcctgaggccggatgcgcagcgggtgcttcttgatcatgcg 4597798

                                                                           
Query: 317     ccacagtgtcctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagt 376
               || | ||| || ||  | |||||||||||||||  |||||| || || || || || || 
Sbjct: 4597797 cccccgtgccccgtgctggtgttcatcaattctggatctggtggtcagctcgggagcagc 4597738

                                         
Query: 377     ttgatcaaaacataccgtgaacttct 402
                |||||||||| ||||||||||||||
Sbjct: 4597737 ctgatcaaaacctaccgtgaacttct 4597712



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 539     gttgcaggtggcgatggtacagcgagttggctgc 572
               |||||||||||||||||||| || || |||||||
Sbjct: 4597360 gttgcaggtggcgatggtacggcaagctggctgc 4597327
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>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1120_C08
          Length = 150300

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                          
Query: 413    caggttattgatctctctgaagaggctccggataaggttttgcaccgtttatatgtgaat 472
              |||||| | ||| |||| ||||||||||||||||| || |||||||||||  |||| || 
Sbjct: 121438 caggttttcgatgtctccgaagaggctccggataaagtgttgcaccgtttgaatgtcaac 121379

                                                                          
Query: 473    gttgaaaggctcaagattgaaggcgacattcttgccgttcaaatttggagaactatgaga 532
               |||| | ||||||||| || || ||||||||||| |||||||||||||||||| | |||
Sbjct: 121378 cttgagaagctcaagatggatggagacattcttgctgttcaaatttggagaactctcaga 121319

                      
Query: 533    ttaattgt 540
               |||||||
Sbjct: 121318 ataattgt 121311



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 116/146 (79%)
 Strand = Plus / Minus

                                                                          
Query: 257    taccgcattccagattacatcttgagaccagatgcccaacaagtaattgttgatcatgct 316
              ||||||||||| ||||||||| |||| || ||||| || |  ||  || |||||||||| 
Sbjct: 121705 taccgcattccggattacatcctgaggccggatgcgcagcgggtgcttcttgatcatgcg 121646

                                                                          
Query: 317    ccacagtgtcctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagt 376
              || | ||| || ||  | |||||||||||||||  |||||| || || || || || || 
Sbjct: 121645 cccccgtgccccgtgctggtgttcatcaattctggatctggtggtcagctcgggagcagc 121586

                                        
Query: 377    ttgatcaaaacataccgtgaacttct 402
               |||||||||| ||||||||||||||
Sbjct: 121585 ctgatcaaaacctaccgtgaacttct 121560



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 539    gttgcaggtggcgatggtacagcgagttggctgc 572
              |||||||||||||||||||| || || |||||||
Sbjct: 121208 gttgcaggtggcgatggtacggcaagctggctgc 121175
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>dbj|AP004590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0577G06
          Length = 58137

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                         
Query: 413   caggttattgatctctctgaagaggctccggataaggttttgcaccgtttatatgtgaat 472
             |||||| | ||| |||| ||||||||||||||||| || |||||||||||  |||| || 
Sbjct: 12095 caggttttcgatgtctccgaagaggctccggataaagtgttgcaccgtttgaatgtcaac 12036

                                                                         
Query: 473   gttgaaaggctcaagattgaaggcgacattcttgccgttcaaatttggagaactatgaga 532
              |||| | ||||||||| || || ||||||||||| |||||||||||||||||| | |||
Sbjct: 12035 cttgagaagctcaagatggatggagacattcttgctgttcaaatttggagaactctcaga 11976

                     
Query: 533   ttaattgt 540
              |||||||
Sbjct: 11975 ataattgt 11968



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 116/146 (79%)
 Strand = Plus / Minus

                                                                         
Query: 257   taccgcattccagattacatcttgagaccagatgcccaacaagtaattgttgatcatgct 316
             ||||||||||| ||||||||| |||| || ||||| || |  ||  || |||||||||| 
Sbjct: 12362 taccgcattccggattacatcctgaggccggatgcgcagcgggtgcttcttgatcatgcg 12303

                                                                         
Query: 317   ccacagtgtcctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagt 376
             || | ||| || ||  | |||||||||||||||  |||||| || || || || || || 
Sbjct: 12302 cccccgtgccccgtgctggtgttcatcaattctggatctggtggtcagctcgggagcagc 12243

                                       
Query: 377   ttgatcaaaacataccgtgaacttct 402
              |||||||||| ||||||||||||||
Sbjct: 12242 ctgatcaaaacctaccgtgaacttct 12217



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 539   gttgcaggtggcgatggtacagcgagttggctgc 572
             |||||||||||||||||||| || || |||||||
Sbjct: 11865 gttgcaggtggcgatggtacggcaagctggctgc 11832
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>gb|DQ237915.1| Oryza sativa (indica cultivar-group) diacylglycerol kinase 1 (DGK1)
           mRNA, complete cds
          Length = 1788

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                       
Query: 326 cctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagtttgatcaaa 385
           |||||| |||| |||||||| |||| |  |||||||||||| ||||| ||||||||||||
Sbjct: 201 cctgtagtagtattcatcaactctagaagtggcggccaactcggaagcagtttgatcaaa 260

                                                                       
Query: 386 acataccgtgaacttctgaacgaagcccaggttattgatctctctgaagaggctccggat 445
           || || ||||| ||||| ||  |||| |||||| ||||| | || ||||||||||| || 
Sbjct: 261 acgtatcgtgagcttctcaataaagcgcaggtttttgatttatcagaagaggctcctgaa 320

                
Query: 446 aaggt 450
           |||||
Sbjct: 321 aaggt 325
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>ref|XM_474019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1500

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                       
Query: 326 cctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagtttgatcaaa 385
           |||||| |||| |||||||| |||| |  |||||||||||| ||||| ||||||||||||
Sbjct: 133 cctgtagtagtattcatcaactctagaagtggcggccaactcggaagcagtttgatcaaa 192

                                                                       
Query: 386 acataccgtgaacttctgaacgaagcccaggttattgatctctctgaagaggctccggat 445
           || || ||||| ||||| ||  |||| |||||| ||||| | || ||||||||||| || 
Sbjct: 193 acgtatcgtgagcttctcaataaagcgcaggtttttgatttatcagaagaggctcctgaa 252

                
Query: 446 aaggt 450
           |||||
Sbjct: 253 aaggt 257
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>dbj|AK100906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132D04, full
           insert sequence
          Length = 1965

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                       
Query: 326 cctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagtttgatcaaa 385
           |||||| |||| |||||||| |||| |  |||||||||||| ||||| ||||||||||||
Sbjct: 426 cctgtagtagtattcatcaactctagaagtggcggccaactcggaagcagtttgatcaaa 485

                                                                       
Query: 386 acataccgtgaacttctgaacgaagcccaggttattgatctctctgaagaggctccggat 445
           || || ||||| ||||| ||  |||| |||||| ||||| | || ||||||||||| || 
Sbjct: 486 acgtatcgtgagcttctcaataaagcgcaggtttttgatttatcagaagaggctcctgaa 545

                
Query: 446 aaggt 450
           |||||
Sbjct: 546 aaggt 550
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>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09,
             complete sequence
          Length = 159502

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                         
Query: 326   cctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagtttgatcaaa 385
             |||||| |||| |||||||| |||| |  |||||||||||| ||||| ||||||||||||
Sbjct: 91565 cctgtagtagtattcatcaactctagaagtggcggccaactcggaagcagtttgatcaaa 91624

                              
Query: 386   acataccgtgaacttct 402
             || || ||||| |||||
Sbjct: 91625 acgtatcgtgagcttct 91641
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                            
Query: 326      cctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagtttgatcaaa 385
                |||||| |||| |||||||| |||| |  |||||||||||| ||||| ||||||||||||
Sbjct: 32321982 cctgtagtagtattcatcaactctagaagtggcggccaactcggaagcagtttgatcaaa 32322041

                                 
Query: 386      acataccgtgaacttct 402
                || || ||||| |||||
Sbjct: 32322042 acgtatcgtgagcttct 32322058
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>emb|AL732338.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0315F07, complete
             sequence
          Length = 73187

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                         
Query: 326   cctgtaatagtgttcatcaattctaaatctggcggccaacttggaagtagtttgatcaaa 385
             |||||| |||| |||||||| |||| |  |||||||||||| ||||| ||||||||||||
Sbjct: 34920 cctgtagtagtattcatcaactctagaagtggcggccaactcggaagcagtttgatcaaa 34979

                              
Query: 386   acataccgtgaacttct 402
             || || ||||| |||||
Sbjct: 34980 acgtatcgtgagcttct 34996
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>gb|BT013146.1| Lycopersicon esculentum clone 134141F, mRNA sequence
          Length = 1873

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 536 attgttgcaggtggcgatggtacagc 561
           |||||||||||||||||||| |||||
Sbjct: 404 attgttgcaggtggcgatggcacagc 429
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>gb|AC146092.2| Pan troglodytes BAC clone RP43-48I3 from 7, complete sequence
          Length = 174070

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 293  caacaagtaattgttgatcat 313
            |||||||||||||||||||||
Sbjct: 8277 caacaagtaattgttgatcat 8297
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>gb|AC152064.3| Pan troglodytes BAC clone RP43-134I6 from chromosome 7, complete sequence
          Length = 179272

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 293    caacaagtaattgttgatcat 313
              |||||||||||||||||||||
Sbjct: 157467 caacaagtaattgttgatcat 157447
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>emb|CR589950.13| Zebrafish DNA sequence from clone DKEY-166L1 in linkage group 14,
             complete sequence
          Length = 209164

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     attgagaaagagcaggtgaat 26
             |||||||||||||||||||||
Sbjct: 15852 attgagaaagagcaggtgaat 15832
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>emb|BX663498.9| Zebrafish DNA sequence from clone DKEYP-97G3 in linkage group 6,
             complete sequence
          Length = 164330

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     attgagaaagagcaggtgaat 26
             |||||||||||||||||||||
Sbjct: 16145 attgagaaagagcaggtgaat 16125
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>gb|AY653977.1| Hepatitis C virus isolate 1507 genotype 3 NS5B protein (NS5B) gene,
           partial cds
          Length = 296

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 184 ggatctcaggatggaagaggagata 208
           |||| ||||||||||||||||||||
Sbjct: 29  ggatatcaggatggaagaggagata 53
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>gb|AY653961.1| Hepatitis C virus isolate 955 genotype 3 NS5B protein (NS5B) gene,
           partial cds
          Length = 296

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 184 ggatctcaggatggaagaggagata 208
           |||| ||||||||||||||||||||
Sbjct: 29  ggatatcaggatggaagaggagata 53
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>emb|AL954746.8| Zebrafish DNA sequence from clone DKEY-10P5, complete sequence
          Length = 231840

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     attgagaaagagcaggtgaat 26
             |||||||||||||||||||||
Sbjct: 13251 attgagaaagagcaggtgaat 13231
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>ref|NM_206933.1| Homo sapiens Usher syndrome 2A (autosomal recessive, mild) (USH2A),
             transcript variant 2, mRNA
          Length = 18883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tcagccacacaccccagatc 149
             ||||||||||||||||||||
Sbjct: 18335 tcagccacacaccccagatc 18316
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    cggagcccgtacagggcgca 178
              ||||||||||||||||||||
Sbjct: 339987 cggagcccgtacagggcgca 339968
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>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0079L11, complete sequence
          Length = 124104

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 537   ttgttgcaggtggcgatggt 556
             ||||||||||||||||||||
Sbjct: 97542 ttgttgcaggtggcgatggt 97561
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>gb|AY481573.1| Homo sapiens Usher syndrome 2A isoform B (USH2A) mRNA, complete cds
          Length = 18883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tcagccacacaccccagatc 149
             ||||||||||||||||||||
Sbjct: 18335 tcagccacacaccccagatc 18316
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>emb|AL365315.8| Human DNA sequence from clone RP11-275K8 on chromosome 1 Contains the 5'
              end of the KCTD3 gene for potassium channel tetramerisation
              domain containing 3, complete sequence
          Length = 139118

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    tcagccacacaccccagatc 149
              ||||||||||||||||||||
Sbjct: 104893 tcagccacacaccccagatc 104912
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>emb|AJ507278.1|HEC507278 Hepatitis C virus partial gene for NS5B protein, isolate KGV410
          Length = 390

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 tcaggatggaagaggagata 208
           ||||||||||||||||||||
Sbjct: 50  tcaggatggaagaggagata 69
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>dbj|AB204658.1| Hepatitis C virus NS5B gene for polyprotein, partial cds, clone:
           UZ12IDU
          Length = 338

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 tcaggatggaagaggagata 208
           ||||||||||||||||||||
Sbjct: 20  tcaggatggaagaggagata 39
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>gb|AC113412.2| Homo sapiens chromosome 5 clone RP11-509M23, complete sequence
          Length = 169637

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   ttccagattacatcttgaga 283
             ||||||||||||||||||||
Sbjct: 43528 ttccagattacatcttgaga 43547
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>gb|AC092799.2| Homo sapiens chromosome 1 clone RP11-5F19, complete sequence
          Length = 162115

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    tcagccacacaccccagatc 149
              ||||||||||||||||||||
Sbjct: 142396 tcagccacacaccccagatc 142377
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 537     ttgttgcaggtggcgatggt 556
               ||||||||||||||||||||
Sbjct: 1435880 ttgttgcaggtggcgatggt 1435899
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>gb|AE009723.1| Brucella melitensis 16M chromosome II, section 85 of 107 of the
            complete sequence
          Length = 10966

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  cggagcccgtacagggcgca 178
            ||||||||||||||||||||
Sbjct: 1803 cggagcccgtacagggcgca 1822
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    cggagcccgtacagggcgca 178
              ||||||||||||||||||||
Sbjct: 831660 cggagcccgtacagggcgca 831679
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>gb|AC083892.19| Mus musculus strain C57BL/6J chromosome 1 clone rp23-116m12, complete
              sequence
          Length = 190588

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    atggaagaggagatagacacccct 217
              ||||||||||||||||||| ||||
Sbjct: 104254 atggaagaggagatagacatccct 104277
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>gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complete sequence
          Length = 166132

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    cccaggttattgatctctct 430
              ||||||||||||||||||||
Sbjct: 126021 cccaggttattgatctctct 126040
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    cggagcccgtacagggcgca 178
              ||||||||||||||||||||
Sbjct: 831639 cggagcccgtacagggcgca 831658
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>dbj|AB081069.1| Hepatitis C virus gene for polyprotein (NS5B region), partial cds,
           strain:UZ12h
          Length = 336

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 tcaggatggaagaggagata 208
           ||||||||||||||||||||
Sbjct: 21  tcaggatggaagaggagata 40
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>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12,
             complete sequence
          Length = 144455

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 537   ttgttgcaggtggcgatggt 556
             ||||||||||||||||||||
Sbjct: 29960 ttgttgcaggtggcgatggt 29979


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,246,722
Number of Sequences: 3902068
Number of extensions: 4246722
Number of successful extensions: 74477
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74310
Number of HSP's gapped (non-prelim): 159
length of query: 572
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 549
effective length of database: 17,143,297,704
effective search space: 9411670439496
effective search space used: 9411670439496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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