>ATPB_PEPNI (P42467) ATP synthase beta chain (EC 3.6.3.14) (Fragment)|
          Length = 427

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -2

Query: 528 LRQGGWWTIVGQVXD-DFPEDILDTSCRPIHVVGDENPVPITVGMDYSLVRKNTSDRGLG 352
           + QG    +VG V D +FP  +L      +H+  DE P     G D+ +V +     G G
Sbjct: 1   MNQGTIIKVVGPVVDVEFPSGLLPNINNALHISSDEQPEDKKTGHDFKVVLEVAEHLG-G 59

Query: 351 GISAAVAPSDGLRDGRTRLEVVED 280
            I  A+A S    DG  R  VV D
Sbjct: 60  NIVRAIAMSS--TDGLMRGMVVTD 81

>RBL2_RAT (O55081) Retinoblastoma-like protein 2 (130 kDa|
           retinoblastoma-associated protein) (PRB2) (P130) (RBR-2)
           (PPAR-alpha-interacting complex protein 128) (PRIC128)
          Length = 1135

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 296 RRVLPSRSPSDGATAAEMPPNPL 364
           RR+  S SPS+G+TA  +PP PL
Sbjct: 677 RRLFESDSPSEGSTAGRIPPQPL 699

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 36/148 (24%), Positives = 46/148 (31%), Gaps = 1/148 (0%)
 Frame = +2

Query: 59   EVATVTTDQXXXXXXXXXXXXXEATTNPRSYFIVPT*FFFPTADESLSTKIGMEFSSPMP 238
            E AT TT Q                  P S   VPT     T+    ST        P  
Sbjct: 1618 ETATTTTTQALFSTPQPTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPRQ 1677

Query: 239  SAGRHDPXXXXXXXXXXXXRRVLPSRSPSDGATAAEMPPNPLSDVFFLTSE*SMPTVIGT 418
            SAG  +P            R  LP  + S G      PP  L+     TS         T
Sbjct: 1678 SAGSTEPTVPGVATSTLPTRSALPGTTGSLGTWRPSQPPT-LAPTTMATSRARPTGTAST 1736

Query: 419  GFSSP-TTWMGRHDVSRMSSGKSSXTCP 499
                P TT +     S +S+ ++  + P
Sbjct: 1737 ASKEPLTTSLAPTLTSELSTSQAETSTP 1764

>ZN236_HUMAN (Q9UL36) Zinc finger protein 236|
          Length = 1845

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = -2

Query: 495 QVXDDFPEDILDTSCRPIHVVGDENPVP-----ITVGMDYSLVRKNTSDRGLGGISAAVA 331
           Q   D  + +L+ S  P  V   ++P P     ITVG++  ++++   + GL  I AA  
Sbjct: 352 QAVSDVIQQLLELS-EPAPVESGQSPQPGQQLSITVGINQDILQQALENSGLSSIPAAAH 410

Query: 330 PSD 322
           P+D
Sbjct: 411 PND 413

>ERBB3_RAT (Q62799) Receptor tyrosine-protein kinase erbB-3 precursor (EC|
            2.7.10.1) (c-erbB3)
          Length = 1339

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/86 (26%), Positives = 30/86 (34%)
 Frame = -2

Query: 564  GSPPRPVASNGLLRQGGWWTIVGQVXDDFPEDILDTSCRPIHVVGDENPVPITVGMDYSL 385
            GSPPRP     L   G  +  VG    D    +  T   P+H +        T   DY  
Sbjct: 1203 GSPPRPPRPGSLEELGYEYMDVGS---DLSASLGSTQSCPLHPMAIVPSAGTTPDEDYEY 1259

Query: 384  VRKNTSDRGLGGISAAVAPSDGLRDG 307
            + +     G GG  AA+        G
Sbjct: 1260 MNRRRGAGGAGGDYAAMGACPAAEQG 1285

>Y4090_STRCO (Q06542) Hypothetical protein SCO4090|
          Length = 283

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 510 WTIVGQVXDDFPEDILDTSCRPI 442
           W  +G+V +DFPE +LD    P+
Sbjct: 92  WQALGEVAEDFPEPVLDALIPPV 114

>RBL2_MOUSE (Q64700) Retinoblastoma-like protein 2 (130 kDa|
           retinoblastoma-associated protein) (PRB2) (P130) (RBR-2)
          Length = 1135

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 296 RRVLPSRSPSDGATAAEMPPNPL 364
           RR+  + SPS+G+T+  +PP PL
Sbjct: 677 RRLFENDSPSEGSTSGRIPPQPL 699

>TM16F_HUMAN (Q4KMQ2) Transmembrane protein 16F|
          Length = 910

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 398 WIIRLSGRIHRIGGWGASRPRW 333
           WI+ L GR HR+ G     PRW
Sbjct: 628 WIMNLIGRFHRVSGSEKITPRW 649

>PYRF_HANFA (P79075) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase) (Uridine
           5'-monophosphate synthase) (UMP synthase)
          Length = 265

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -2

Query: 306 RTRLEVVEDFHVDIFDGSCRPAEGIGDENSMPIFVDRDSSAVGK 175
           +T +++++DF    F+G+  P + + ++++  IF DR  + +GK
Sbjct: 60  KTHIDIIDDFS---FEGTIVPLKKLAEKHNFLIFEDRKFADIGK 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,187,529
Number of Sequences: 219361
Number of extensions: 2040867
Number of successful extensions: 6079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6076
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)