ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah62h11 |
|---|---|
| Clone Library Name | barley_pub |
>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1) Length = 4374 Score = 36.2 bits (82), Expect = 0.099 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%) Frame = +2 Query: 404 GTGFSSPTTWMGRHDVSRMSSGKSSPTCPTIVHHPPWRRSPSDATASVA-IPITPFFSYV 580 G+G SS TT + ++ ++PT PT +P+ T++ A + T + V Sbjct: 3477 GSGASSTTTATSTTSTTTTTAASTTPTPPT---------APTPVTSAPALVAATAISTIV 3527 Query: 581 FFLTTE*FMPTMICMGFSSPKTRKG*HGPSKMSSGKSSTT 700 +T PT S T KG P+K+S G SS+T Sbjct: 3528 VAASTTVTTPTTATTTVSISPTTKGSKSPAKVSDGGSSST 3567
>ATPB_PEPNI (P42467) ATP synthase beta chain (EC 3.6.3.14) (Fragment)| Length = 427 Score = 34.7 bits (78), Expect = 0.29 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Frame = -1 Query: 519 LRQGGWWTIVGQVGD-DFPEDILDTSCRPIHVVGDENPVPITVGMDYSLVRKNTSDRGLG 343 + QG +VG V D +FP +L +H+ DE P G D+ +V + G G Sbjct: 1 MNQGTIIKVVGPVVDVEFPSGLLPNINNALHISSDEQPEDKKTGHDFKVVLEVAEHLG-G 59 Query: 342 GISAAVAPSDGLRDGRTRLEVVED 271 I A+A S DG R VV D Sbjct: 60 NIVRAIAMSS--TDGLMRGMVVTD 81
>ATG1_CRYNE (Q5K8D3) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 988 Score = 34.3 bits (77), Expect = 0.38 Identities = 34/128 (26%), Positives = 53/128 (41%) Frame = +2 Query: 173 TADESLSTKIGMEFSSPMPSAGRHDPXXXXXXXXXXXXRRVLPSRSPSDGATAAEMPPNP 352 T +ESLS + + S+ + G D R++P+R+P A A + P P Sbjct: 348 TEEESLSLDVSTDSSAGL---GESDRIRQMVASTEQSKDRLIPTRAPQPLAADAALNPQP 404 Query: 353 LSDVFFLTSE*SMPTVIGTGFSSPTTWMGRHDVSRMSSGKSSPTCPTIVHHPPWRRSPSD 532 + TSE + + T S PT R + G ++P+ PT + P SPS Sbjct: 405 AVPISRDTSE--GRSRLSTPPSRPTP--TRRSTPKYYVGDATPSEPTAIIPP----SPSS 456 Query: 533 ATASVAIP 556 A + P Sbjct: 457 APTPTSAP 464
>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)| Length = 1300 Score = 32.7 bits (73), Expect = 1.1 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Frame = +2 Query: 299 PSRSPSDGATAAEMPPNPLSDVFFLTSE*SMPT--VIGTGFSSPTTWMGRHDVSRMSSGK 472 PS SP+ +A P+ L + L P + G+G ++P + G +SR SG Sbjct: 240 PSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGA 299 Query: 473 SSPTCPTIVHHPPWRRSPSDATASVA 550 S+P P P +PS A A A Sbjct: 300 STPGGPA---EPSAPAAPSAAPAPAA 322
>RBL2_RAT (O55081) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) (PPAR-alpha-interacting complex protein 128) (PRIC128) Length = 1135 Score = 32.0 bits (71), Expect = 1.9 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +2 Query: 287 RRVLPSRSPSDGATAAEMPPNPL 355 RR+ S SPS+G+TA +PP PL Sbjct: 677 RRLFESDSPSEGSTAGRIPPQPL 699
>SN1L1_HUMAN (P57059) Serine/threonine-protein kinase SNF1-like kinase 1 (EC| 2.7.11.1) (Serine/threonine-protein kinase SNF1LK) Length = 783 Score = 31.2 bits (69), Expect = 3.2 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Frame = +2 Query: 311 PSDGATAAEMPPNPLSDVFFLTSE*SMPTVIGTGF--------SSPTTWMGRHDVSRMSS 466 P D + + P P+S L + S G G S P++ RH ++ +S+ Sbjct: 420 PVDASCSGVFRPRPVSPSSLLDTAISEEARQGPGLEEEQDTQESLPSSTGRRHTLAEVST 479 Query: 467 GKSSPTCPTIVHHPPWRRSPSDATAS 544 S T P IV P SP++ T+S Sbjct: 480 RLSPLTAPCIVVSPSTTASPAEGTSS 505
>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 751 Score = 30.8 bits (68), Expect = 4.2 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 554 GSPPRRWRRTGFFAKVGGGR*WGRSEMTSLKTSSTRRVDPSMSSVTRTP 408 G PP+ R+G+ + G RS SL T TR +P +V RTP Sbjct: 496 GEPPKSGERSGYSSPGSPGTPGSRSRTPSLPTPPTR--EPKKVAVVRTP 542
>TAU_MOUSE (P10637) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 732 Score = 30.8 bits (68), Expect = 4.2 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 554 GSPPRRWRRTGFFAKVGGGR*WGRSEMTSLKTSSTRRVDPSMSSVTRTP 408 G PP+ R+G+ + G RS SL T TR +P +V RTP Sbjct: 477 GEPPKSGERSGYSSPGSPGTPGSRSRTPSLPTPPTR--EPKKVAVVRTP 523
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.8 bits (68), Expect = 4.2 Identities = 36/148 (24%), Positives = 46/148 (31%), Gaps = 1/148 (0%) Frame = +2 Query: 50 EVATVTTDQXXXXXXXXXXXXXEATTNPRSYFIVPT*FFFPTADESLSTKIGMEFSSPMP 229 E AT TT Q P S VPT T+ ST P Sbjct: 1618 ETATTTTTQALFSTPQPTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPRQ 1677 Query: 230 SAGRHDPXXXXXXXXXXXXRRVLPSRSPSDGATAAEMPPNPLSDVFFLTSE*SMPTVIGT 409 SAG +P R LP + S G PP L+ TS T Sbjct: 1678 SAGSTEPTVPGVATSTLPTRSALPGTTGSLGTWRPSQPPT-LAPTTMATSRARPTGTAST 1736 Query: 410 GFSSP-TTWMGRHDVSRMSSGKSSPTCP 490 P TT + S +S+ ++ + P Sbjct: 1737 ASKEPLTTSLAPTLTSELSTSQAETSTP 1764
>TOP1_STRCO (Q9X909) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 952 Score = 30.4 bits (67), Expect = 5.4 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Frame = +1 Query: 172 DGRRISIYEDRHGVLVTDALRWSTRPVEDVYMEVLYDLQTSPPIAEPVRRSHRGRDAPQP 351 +G I+ R+G + + ED L+++ +A + RGR A +P Sbjct: 771 EGVEITAQNGRYGPYLKKGTDSRSLQTEDQ----LFEITLEEALAIYAQPKQRGRAAAKP 826 Query: 352 PIRCILPD---KRIIHAYSDRHGVLVTDDMDGSTRRVEDVFREVISDLPHYRPPPTLAKK 522 P++ + D ++ + R G VTD +T R +D E+ + + AK Sbjct: 827 PLKELGTDPVSEKPVVVKDGRFGPYVTDGETNATLRSDDSVEEITPERGYELLAEKRAKG 886 Query: 523 PVRR 534 P ++ Sbjct: 887 PAKK 890
>A6_DROME (O46341) Protein a6| Length = 409 Score = 30.0 bits (66), Expect = 7.1 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 8/137 (5%) Frame = +1 Query: 121 DHQSTFLFHRPDLILLPD--GRRISIYEDRHGVLVTDALRWSTRPVEDVYMEVLYDLQTS 294 +HQ + D + L R++S + RH V L+ DV +++L D + Sbjct: 34 EHQRICMARMRDQVALASKTDRQLSHLQRRH---VASTLQ------PDVTIDLLSDDDET 84 Query: 295 PPIAEPVRRSHRGRDAPQPPIRC------ILPDKRIIHAYSDRHGVLVTDDMDGSTRRVE 456 P +P H P P R P + H+Y +L+T D + + + Sbjct: 85 PSAGQPAAAGHNRLLIPAPGHRAHRTGRRQAPRRAATHSYPVTDSILITSDDEHNEQEPS 144 Query: 457 DVFREVISDLPHYRPPP 507 R V S L PPP Sbjct: 145 STAR-VRSQLSMRSPPP 160
>TAU_PANTR (Q5YCW1) Microtubule-associated protein tau| Length = 775 Score = 30.0 bits (66), Expect = 7.1 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 554 GSPPRRWRRTGFFAKVGGGR*WGRSEMTSLKTSSTRRVDPSMSSVTRTP 408 G PP+ R+G+ + G RS SL T TR +P +V RTP Sbjct: 520 GEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTR--EPKKVAVVRTP 566
>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau| Length = 775 Score = 30.0 bits (66), Expect = 7.1 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 554 GSPPRRWRRTGFFAKVGGGR*WGRSEMTSLKTSSTRRVDPSMSSVTRTP 408 G PP+ R+G+ + G RS SL T TR +P +V RTP Sbjct: 520 GEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTR--EPKKVAVVRTP 566
>TAU_GORGO (Q5YCW0) Microtubule-associated protein tau| Length = 775 Score = 30.0 bits (66), Expect = 7.1 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 554 GSPPRRWRRTGFFAKVGGGR*WGRSEMTSLKTSSTRRVDPSMSSVTRTP 408 G PP+ R+G+ + G RS SL T TR +P +V RTP Sbjct: 520 GEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTR--EPKKVAVVRTP 566
>TAU_PONPY (Q5S6V2) Microtubule-associated protein tau| Length = 757 Score = 30.0 bits (66), Expect = 7.1 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 554 GSPPRRWRRTGFFAKVGGGR*WGRSEMTSLKTSSTRRVDPSMSSVTRTP 408 G PP+ R+G+ + G RS SL T TR +P +V RTP Sbjct: 502 GEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTR--EPKKVAVVRTP 548
>TAU_HUMAN (P10636) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 757 Score = 30.0 bits (66), Expect = 7.1 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 554 GSPPRRWRRTGFFAKVGGGR*WGRSEMTSLKTSSTRRVDPSMSSVTRTP 408 G PP+ R+G+ + G RS SL T TR +P +V RTP Sbjct: 502 GEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTR--EPKKVAVVRTP 548
>Y4090_STRCO (Q06542) Hypothetical protein SCO4090| Length = 283 Score = 29.6 bits (65), Expect = 9.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 501 WTIVGQVGDDFPEDILDTSCRPI 433 W +G+V +DFPE +LD P+ Sbjct: 92 WQALGEVAEDFPEPVLDALIPPV 114
>RBL2_MOUSE (Q64700) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) Length = 1135 Score = 29.6 bits (65), Expect = 9.3 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +2 Query: 287 RRVLPSRSPSDGATAAEMPPNPL 355 RR+ + SPS+G+T+ +PP PL Sbjct: 677 RRLFENDSPSEGSTSGRIPPQPL 699
>TM16F_HUMAN (Q4KMQ2) Transmembrane protein 16F| Length = 910 Score = 29.6 bits (65), Expect = 9.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 389 WIIRLSGRIHRIGGWGASRPRW 324 WI+ L GR HR+ G PRW Sbjct: 628 WIMNLIGRFHRVSGSEKITPRW 649
>PYRF_HANFA (P79075) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) Length = 265 Score = 29.6 bits (65), Expect = 9.3 Identities = 12/44 (27%), Positives = 28/44 (63%) Frame = -1 Query: 297 RTRLEVVEDFHVDIFDGSCRPAEGIGDENSMPIFVDRDSSAVGK 166 +T +++++DF F+G+ P + + ++++ IF DR + +GK Sbjct: 60 KTHIDIIDDFS---FEGTIVPLKKLAEKHNFLIFEDRKFADIGK 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,430,022 Number of Sequences: 219361 Number of extensions: 2086616 Number of successful extensions: 6526 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 6189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6519 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
