ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalp24 |
|---|---|
| Clone Library Name | barley_pub |
>GLGB2_STRCO (Q59832) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)| (Glycogen branching enzyme 2) (BE 2) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2) Length = 741 Score = 32.0 bits (71), Expect = 1.2 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%) Frame = +1 Query: 106 PFSLRNIHTPPPRPHLSYSTGVDAFPS----------AFSPYKEHPQGQAW 228 PFS+ +H P RP L+Y + P+ P EHP G +W Sbjct: 264 PFSVYEVHLPSWRPGLTYRELAEELPAYVKDLGFTHVELMPVAEHPYGPSW 314
>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -3 Query: 488 GCHXRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 381 G H +RFL G L+PLP + +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGTLHPLP----SGLRGLLRPSP 120
>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does| not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) Length = 925 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = +2 Query: 107 PSAFGTSILLHLVLTYPTQPGWMPSPLLSV-HIKNIHRGKHGSDSETYDTE 256 PS +S+L+ L L+Y GW+P ++S+ H+K+++ G + S S+ T+ Sbjct: 448 PSFPPSSLLISLDLSYNDLSGWLPESIISLPHLKSLYFGCNPSMSDEDTTK 498
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 32.0 bits (71), Expect = 1.2 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Frame = +2 Query: 32 FDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSILLHLVLTY------PTQPGWMPSPLLS 193 ++ + DG + P + RA L + + TS LLH +T P P + +PLL Sbjct: 846 YETSEDGSLLPVPSAHKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLR 905 Query: 194 VHIKNIHRGKHGSDSETYDTEG 259 + GSD E +D EG Sbjct: 906 QRRVRCYDSNGGSDDEDFDGEG 927
>VKGC_BOVIN (Q07175) Vitamin K-dependent gamma-carboxylase (EC 6.4.-.-)| (Gamma-glutamyl carboxylase) (Vitamin K gamma glutamyl carboxylase) Length = 758 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/62 (35%), Positives = 27/62 (43%) Frame = -2 Query: 411 FHSRLAAAQPRKSYILRLCLSMALISSSDKAFGRVRPNLLNIASNFAGSNLPSVSYVSES 232 FH RL RK +I R M IS + AFG RP+L +A +NL E Sbjct: 677 FHERLVRFLLRKLFIFRRSFLMTCISLRNLAFG--RPSLEQLAQEVTYANLRPFEPAGEP 734 Query: 231 LP 226 P Sbjct: 735 SP 736
>GLGB1_STRAW (Q82JF0) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)| (Glycogen branching enzyme 1) (BE 1) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1) Length = 838 Score = 31.2 bits (69), Expect = 2.0 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 21/68 (30%) Frame = +1 Query: 88 SDRAWV-----------PFSLRNIHTPPPRPHLSYSTGVDAFPSAFS----------PYK 204 +D AW+ PFS+ +H P RP L+Y + P+ + P Sbjct: 339 ADEAWMAARGERPVHESPFSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELLPVA 398 Query: 205 EHPQGQAW 228 EHP G +W Sbjct: 399 EHPFGGSW 406
>GLGB2_STRAW (Q825Q8) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)| (Glycogen branching enzyme 2) (BE 2) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2) Length = 592 Score = 30.8 bits (68), Expect = 2.7 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 10/51 (19%) Frame = +1 Query: 106 PFSLRNIHTPPPRPHLSYSTGVDAFPSAFS----------PYKEHPQGQAW 228 PFS+ +H P RP L+Y + P+ + P EHP G +W Sbjct: 117 PFSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELLPVAEHPFGGSW 167
>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -3 Query: 488 GCHXRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 381 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -3 Query: 488 GCHXRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 381 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>ALS2_PANTR (Q5BIW4) Alsin (Amyotrophic lateral sclerosis protein 2 homolog)| Length = 1657 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 281 RILLVQTSLQCHTSQNRSHACPCGCSLYGLKAEGKAST 168 ++L+ T + H + SH CP G +L +AE AST Sbjct: 237 QLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHAST 274
>ALS2_HUMAN (Q96Q42) Alsin (Amyotrophic lateral sclerosis protein 2)| Length = 1657 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 281 RILLVQTSLQCHTSQNRSHACPCGCSLYGLKAEGKAST 168 ++L+ T + H + SH CP G +L +AE AST Sbjct: 237 QLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHAST 274
>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog| (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) Length = 196 Score = 30.0 bits (66), Expect = 4.5 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +1 Query: 82 PASDRAWVPFSLRNIHTPPPRPHLSYSTGVDAFPSAFSPYKEHPQGQAWER 234 PAS AW P+ L P PH +++ A + + + +P +A ++ Sbjct: 138 PASPEAWAPYPLYTAELAPAIPHAAFTYPAAAAAALHAQMRWYPPSEATQQ 188
>AROQ1_AGRT5 (Q8UFR5) 3-dehydroquinate dehydratase 1 (EC 4.2.1.10)| (3-dehydroquinase 1) (Type II DHQase 1) Length = 145 Score = 30.0 bits (66), Expect = 4.5 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +2 Query: 29 FFDRNGDGVIYPWETFQSLRAIGLG-SPSAFG-TSILLHLVLTYPTQPGWMPSPLLSVHI 202 F N +GV+ W RA G+ +P A+ TSI LH + + +P++ VHI Sbjct: 49 FRQSNHEGVLVDWLHEAGERAAGVVINPGAYSHTSIALHDAIRA------ISTPVVEVHI 102 Query: 203 KNIH 214 NIH Sbjct: 103 SNIH 106
>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2| protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E mental retardation syndrome protein) Length = 1311 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +2 Query: 137 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 301 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1039 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1093 Query: 302 GR 307 G+ Sbjct: 1094 GK 1095
>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +2 Query: 137 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 301 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1054 Query: 302 GR 307 G+ Sbjct: 1055 GK 1056
>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +2 Query: 137 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 301 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1054 Query: 302 GR 307 G+ Sbjct: 1055 GK 1056
>AFF2_MOUSE (O55112) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) (FMR2P) (Ox19 protein) Length = 1272 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = +2 Query: 137 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 301 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSANVRRPKLTFDDSVHNADFYMQEAKKLKHKADALFEKF 1054 Query: 302 GR 307 G+ Sbjct: 1055 GK 1056
>GPC5_MOUSE (Q8CAL5) Glypican-5 precursor| Length = 572 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 170 WMPSPLLSVHIKNIHRGKHGSDSETYDT 253 WMP + +K +HR HGS +T T Sbjct: 521 WMPDSMNFSDVKQVHRADHGSTLDTTST 548
>GLMS_RALSO (Q8Y303) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 611 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 47 DGVIYPWETF-QSLRAIGLGSPSAFGTSILLHLVLTYPTQPGWMPSPLLSVHIKNIHRGK 223 +G+I +ET + L+A+G G S T ++ HL+ T P L ++ + + Sbjct: 98 NGIIENYETLREELKAVGYGFESQTDTEVVAHLIHQAYTYPSSATRGHLFASVRAVVKRL 157 Query: 224 HGS 232 HG+ Sbjct: 158 HGA 160
>Y2829_VIBVU (Q8D8Y6) Putative reductase VV1_2829 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 7.8 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -2 Query: 252 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 163 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y2423_PHOPR (Q6LPG9) Putative reductase PBPRA2423 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 7.8 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -2 Query: 252 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 163 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y1437_VIBVY (Q7MLJ0) Putative reductase VV1437 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 7.8 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -2 Query: 252 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 163 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y1231_VIBPA (Q87QB9) Putative reductase VP1231 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 7.8 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -2 Query: 252 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 163 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>SAPA_SALTY (P36634) Peptide transport periplasmic protein sapA precursor| Length = 549 Score = 29.3 bits (64), Expect = 7.8 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Frame = +2 Query: 5 SVLQQHAAFFDRNGDGVIY-PWETFQSLRAIGLGSPSAFGTSILLHLVLTYPTQPGWMPS 181 S+L + + +D + Y P ++ + L+A+G+ ++ LHL + +Q W PS Sbjct: 343 SILPRASWAYDNDAKITEYNPQKSREQLKALGI-------ENLTLHLWVPTSSQ-AWNPS 394 Query: 182 PLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK 277 PL + + + G EGRF+ A+ Sbjct: 395 PLKTAELIQADMAQVGVKVVIVPVEGRFQEAR 426
>DNAE2_MYCPA (Q73U92) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1093 Score = 29.3 bits (64), Expect = 7.8 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = -3 Query: 497 ARTGCHXRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSPGNHTYYGC----V*AWR*SHL 330 A TG H PSR A + + S GWL P G+H G + AWR + Sbjct: 256 ATTGAHFAGPSRRRLAMAMGAIRARESLDSAAGWLAPLGGSHLRSGAEMARLFAWRPQAV 315 Query: 329 LTKHSAEFGQTC 294 +AE G+ C Sbjct: 316 TA--AAELGEQC 325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,989,233 Number of Sequences: 219361 Number of extensions: 1914196 Number of successful extensions: 6126 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 5908 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6121 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
