ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalp21 |
|---|---|
| Clone Library Name | barley_pub |
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 108 bits (270), Expect(2) = 1e-34 Identities = 51/75 (68%), Positives = 63/75 (84%), Gaps = 2/75 (2%) Frame = +1 Query: 106 QAAPRSNRFTVMAAENIDEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDG 279 +++ ++RF MAA+ +DE + TD +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDG Sbjct: 40 KSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDG 99 Query: 280 THEAVLSSYXYVSQG 324 TH AVLSSY Y+SQG Sbjct: 100 THVAVLSSYDYISQG 114 Score = 55.8 bits (133), Expect(2) = 1e-34 Identities = 31/39 (79%), Positives = 34/39 (87%), Gaps = 3/39 (7%) Frame = +2 Query: 2 AAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGK 109 AAAFSSTVGAPASTPT +FLGKKL K QV++AV YHGK Sbjct: 2 AAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGK 40
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 135 bits (340), Expect = 2e-32 Identities = 65/69 (94%), Positives = 67/69 (97%) Frame = +1 Query: 118 RSNRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVL 297 ++NRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVL Sbjct: 40 KANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVL 99 Query: 298 SSYXYVSQG 324 SSY YVSQG Sbjct: 100 SSYEYVSQG 108 Score = 87.0 bits (214), Expect = 1e-17 Identities = 54/124 (43%), Positives = 55/124 (44%) Frame = +2 Query: 2 AAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKQLQGPXXXXXXXXXXXXXXXXXXX 181 AAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGK + Sbjct: 2 AAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKW 61 Query: 182 XXVLXXXXXXXXXXXXEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKYDFDNTMGG 361 L G LRKYDFDNTMGG Sbjct: 62 KG-LAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGG 120 Query: 362 FYIA 373 FYIA Sbjct: 121 FYIA 124
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 110 bits (274), Expect = 1e-24 Identities = 56/69 (81%), Positives = 60/69 (86%), Gaps = 2/69 (2%) Frame = +1 Query: 124 NRFTVMAAENIDEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVL 297 NRF VMA E +DE + TD +WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVL Sbjct: 42 NRFKVMAKE-LDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVL 100 Query: 298 SSYXYVSQG 324 SSY Y+SQG Sbjct: 101 SSYEYLSQG 109 Score = 85.5 bits (210), Expect = 3e-17 Identities = 53/124 (42%), Positives = 53/124 (42%) Frame = +2 Query: 2 AAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKQLQGPXXXXXXXXXXXXXXXXXXX 181 AAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGK Sbjct: 2 AAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDR 61 Query: 182 XXVLXXXXXXXXXXXXEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKYDFDNTMGG 361 L G LR YDFDNTMGG Sbjct: 62 WKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGG 121 Query: 362 FYIA 373 FYIA Sbjct: 122 FYIA 125
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 95.9 bits (237), Expect(2) = 1e-22 Identities = 46/69 (66%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Frame = +1 Query: 121 SNRFTVMAAE-NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVL 297 S F ++A E + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP GTH AV+ Sbjct: 50 SGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVM 109 Query: 298 SSYXYVSQG 324 SSY Y+SQG Sbjct: 110 SSYDYISQG 118 Score = 28.1 bits (61), Expect(2) = 1e-22 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LR+Y+ DN M GFYIA Sbjct: 119 LRQYNLDNNMDGFYIA 134
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 95.9 bits (237), Expect(2) = 1e-22 Identities = 46/69 (66%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Frame = +1 Query: 121 SNRFTVMAAE-NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVL 297 S F ++A E + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP GTH AV+ Sbjct: 50 SGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVM 109 Query: 298 SSYXYVSQG 324 SSY Y+SQG Sbjct: 110 SSYDYISQG 118 Score = 28.1 bits (61), Expect(2) = 1e-22 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LR+Y+ DN M GFYIA Sbjct: 119 LRQYNLDNNMDGFYIA 134
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 103 bits (256), Expect = 1e-22 Identities = 52/72 (72%), Positives = 60/72 (83%), Gaps = 3/72 (4%) Frame = +1 Query: 118 RSNRFTVMAAEN-IDEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHE 288 +S VMAA+ +D+ + TD +WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHE Sbjct: 35 KSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHE 94 Query: 289 AVLSSYXYVSQG 324 A+LSSY Y+SQG Sbjct: 95 AILSSYEYISQG 106 Score = 49.7 bits (117), Expect = 2e-06 Identities = 40/127 (31%), Positives = 44/127 (34%), Gaps = 3/127 (2%) Frame = +2 Query: 2 AAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHG---KQLQGPXXXXXXXXXXXXXXXX 172 A+AFSSTVGAPASTPT FLGKK+K YHG + + Sbjct: 2 ASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQTD 55 Query: 173 XXXXXVLXXXXXXXXXXXXEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKYDFDNT 352 L G LRKYDFDNT Sbjct: 56 ADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNT 115 Query: 353 MGGFYIA 373 M G YIA Sbjct: 116 MDGLYIA 122
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 95.1 bits (235), Expect(2) = 3e-22 Identities = 46/73 (63%), Positives = 56/73 (76%) Frame = +1 Query: 106 QAAPRSNRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTH 285 Q+ +SN + A D++ + D+W+GLAYD SDDQQDITRGKG+VDS+FQAP G GTH Sbjct: 46 QSNKKSNGSFKVLAVKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTH 105 Query: 286 EAVLSSYXYVSQG 324 AVLSSY YVSQG Sbjct: 106 HAVLSSYEYVSQG 118 Score = 27.7 bits (60), Expect(2) = 3e-22 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LR+Y+ DN M GFYIA Sbjct: 119 LRQYNLDNMMDGFYIA 134
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 91.7 bits (226), Expect(2) = 1e-21 Identities = 48/72 (66%), Positives = 54/72 (75%), Gaps = 4/72 (5%) Frame = +1 Query: 121 SNRFTVMAAE--NIDEKRNT--DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHE 288 +NR +AAE + D K+ T D+WKGL D SDDQQDI RGKG+VDSLFQAPTG GTH Sbjct: 51 TNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHH 110 Query: 289 AVLSSYXYVSQG 324 AVL SY YVSQG Sbjct: 111 AVLQSYEYVSQG 122 Score = 28.9 bits (63), Expect(2) = 1e-21 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LR+Y+ DNT+ GFYIA Sbjct: 123 LRQYNMDNTLDGFYIA 138
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 93.6 bits (231), Expect(2) = 2e-21 Identities = 46/72 (63%), Positives = 55/72 (76%), Gaps = 4/72 (5%) Frame = +1 Query: 121 SNRFTVMAAENID----EKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHE 288 +N+ + AE ID ++ ++D+WKGL D SDDQQDITRGKG+VDSLFQAPTG GTH Sbjct: 51 TNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHH 110 Query: 289 AVLSSYXYVSQG 324 AVL SY YVSQG Sbjct: 111 AVLQSYEYVSQG 122 Score = 26.6 bits (57), Expect(2) = 2e-21 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LR+Y+ DN + GFYIA Sbjct: 123 LRQYNLDNKLDGFYIA 138
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 90.5 bits (223), Expect(2) = 2e-21 Identities = 41/68 (60%), Positives = 53/68 (77%) Frame = +1 Query: 121 SNRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 300 S ++A+ + D++ + D+WKGLA+D SDDQQDITRGKG VDSLFQAP G GTH A++S Sbjct: 51 SGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMS 110 Query: 301 SYXYVSQG 324 SY Y+S G Sbjct: 111 SYEYISTG 118 Score = 29.3 bits (64), Expect(2) = 2e-21 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LR+Y+FDN M G+YIA Sbjct: 119 LRQYNFDNNMDGYYIA 134
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 91.3 bits (225), Expect(2) = 8e-21 Identities = 40/68 (58%), Positives = 52/68 (76%) Frame = +1 Query: 121 SNRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 300 + F ++A ++ +++ DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLS Sbjct: 48 TGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLS 107 Query: 301 SYXYVSQG 324 SY Y+S G Sbjct: 108 SYEYISAG 115 Score = 26.6 bits (57), Expect(2) = 8e-21 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LR Y +DN + GFYIA Sbjct: 116 LRDYSYDNNVDGFYIA 131
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 88.6 bits (218), Expect(2) = 2e-20 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 3/71 (4%) Frame = +1 Query: 121 SNRFTVMAAEN-IDEKRNT--DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEA 291 S F ++AA+ I+E + T D+W+GLAYD+SDDQQDITRGKG+VDSLFQAP GTH A Sbjct: 52 SGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYA 111 Query: 292 VLSSYXYVSQG 324 V+SS+ Y+S G Sbjct: 112 VISSHKYLSAG 122 Score = 27.7 bits (60), Expect(2) = 2e-20 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LR+Y+FDN GFYIA Sbjct: 123 LRQYNFDNIKDGFYIA 138
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 83.6 bits (205), Expect(2) = 2e-19 Identities = 43/72 (59%), Positives = 51/72 (70%) Frame = +1 Query: 109 AAPRSNRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHE 288 ++ R+ TV AAEN E++NTDKW LA D SDDQ DI RGKG+VDSLFQAP GTH Sbjct: 47 SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHV 104 Query: 289 AVLSSYXYVSQG 324 + SS+ Y SQG Sbjct: 105 PIQSSFEYESQG 116 Score = 30.0 bits (66), Expect(2) = 2e-19 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 LRKYD DN +G FYIA Sbjct: 117 LRKYDIDNMLGDFYIA 132
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 87.8 bits (216), Expect(2) = 4e-19 Identities = 42/67 (62%), Positives = 52/67 (77%) Frame = +1 Query: 121 SNRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 300 SNR + A+ +DE + D+WKGL + SDDQQDI RGKG+VDSLFQAPTG GTH A+++ Sbjct: 51 SNRNLRVVAQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMN 109 Query: 301 SYXYVSQ 321 SY YVSQ Sbjct: 110 SYEYVSQ 116 Score = 24.3 bits (51), Expect(2) = 4e-19 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +2 Query: 326 LRKYDFDNTMGGFYIA 373 L+ Y DN + GFYIA Sbjct: 118 LKTYQLDNKLDGFYIA 133
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 90.1 bits (222), Expect = 1e-18 Identities = 46/68 (67%), Positives = 54/68 (79%), Gaps = 3/68 (4%) Frame = +1 Query: 130 FTVMAAEN-IDEKRNT--DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 300 F ++AAE I+E + T D+WKGLAYDISDDQQDITRGKG+VD LFQAP GTH AV+S Sbjct: 55 FKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMS 114 Query: 301 SYXYVSQG 324 SY Y+S G Sbjct: 115 SYEYLSTG 122
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 55.8 bits (133), Expect = 2e-08 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 3/59 (5%) Frame = +1 Query: 163 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYXYVSQGPA 330 ++ +W+ + D SDDQQDITRG+ +VD LFQ G GTH AVLSS Y+SQ A Sbjct: 37 RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRA 95
>SYGB_SALTY (Q8ZL96) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 688 Score = 32.0 bits (71), Expect = 0.38 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 344 RSRTSAGPWLTYX*ELR---TASWVPSPVGAWKSESTMPFPLVMSCWSSEISYARPFHLS 174 R +T G WL Y ++ T + VP+ V S + +P P +M +S++ + RP H Sbjct: 106 RLKTDKGEWLLYRAHVKGESTEALVPNMVAT--SLAKLPIPKLMRWGASDVHFVRPVHTV 163 Query: 173 VFL 165 L Sbjct: 164 TLL 166
>PTR2_CANAL (P46030) Peptide transporter PTR2| Length = 623 Score = 31.2 bits (69), Expect = 0.64 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Frame = -3 Query: 278 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 132 P+P+ AWK+ S CW + E++Y R ++FL S FSAA+++ Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546
>SYGB_ECOLI (P00961) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 688 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = -3 Query: 344 RSRTSAGPWLTYX*ELR---TASWVPSPVGAWKSESTMPFPLVMSCWSSEISYARPFHLS 174 R T G WL Y ++ T + +P+ V S + +P P +M +S++ + RP H Sbjct: 106 RLTTDKGEWLLYRAHVKGESTEALLPNMVAT--SLAKLPIPKLMRWGASDVHFVRPVHTV 163 Query: 173 VFL 165 L Sbjct: 164 TLL 166
>SYGB_ECOL6 (P67030) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 688 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = -3 Query: 344 RSRTSAGPWLTYX*ELR---TASWVPSPVGAWKSESTMPFPLVMSCWSSEISYARPFHLS 174 R T G WL Y ++ T + +P+ V S + +P P +M +S++ + RP H Sbjct: 106 RLTTDKGEWLLYRAHVKGESTEALLPNMVAT--SLAKLPIPKLMRWGASDVHFVRPVHTV 163 Query: 173 VFL 165 L Sbjct: 164 TLL 166
>SYGB_ECO57 (P67031) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 688 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = -3 Query: 344 RSRTSAGPWLTYX*ELR---TASWVPSPVGAWKSESTMPFPLVMSCWSSEISYARPFHLS 174 R T G WL Y ++ T + +P+ V S + +P P +M +S++ + RP H Sbjct: 106 RLTTDKGEWLLYRAHVKGESTEALLPNMVAT--SLAKLPIPKLMRWGASDVHFVRPVHTV 163 Query: 173 VFL 165 L Sbjct: 164 TLL 166
>CLUS_RAT (P05371) Clusterin precursor (Sulfated glycoprotein 2) (SGP-2)| (Dimeric acid glycoprotein) (DAG) (Testosterone repressed prostate message 2) (TRPM-2) [Contains: Clusterin beta chain; Clusterin alpha chain] Length = 447 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +1 Query: 76 AGDLGRELPWQAAPRSNRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSL 255 +G +GR+L S + M + ID +D+ + D D TR GI+D+L Sbjct: 132 SGLVGRQLEEFLNQSSPFYFWMNGDRIDSLLESDRQQSQVLDAMQDS--FTRASGIIDTL 189 Query: 256 FQ 261 FQ Sbjct: 190 FQ 191
>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 421 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 166 RNTDKWKGLAYDISDDQQDITRGKGI 243 R+ K KG A++ISDD + + KGI Sbjct: 46 RDVKKHKGYAFEISDDLESVIEDKGI 71
>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107| Length = 1070 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +1 Query: 136 VMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 267 +++ E++ K++TDK+ L +SD+ I K V+S + P Sbjct: 697 LISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740
>SYGB_SALTI (Q8Z2B3) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 688 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = -3 Query: 344 RSRTSAGPWLTYX*ELR---TASWVPSPVGAWKSESTMPFPLVMSCWSSEISYARPFHLS 174 R T G WL Y ++ T + +P+ V S + +P P +M +S++ + RP H Sbjct: 106 RLTTDKGEWLLYRAYVKGESTEALLPNMVAT--SLAKLPIPKLMRWGASDVHFVRPVHTV 163 Query: 173 VFL 165 L Sbjct: 164 TLL 166
>PYR1_HUMAN (P27708) CAD protein [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2225 Score = 28.5 bits (62), Expect = 4.2 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Frame = -2 Query: 357 PMVLSKSYFRRXLADVLVGAEDGLVGAVARGRLEERVHDA-LPSGDVLLVV--GDIVRKT 187 P+V+SK DV A DG+V A+A + E V +A + SGD LV DI KT Sbjct: 1122 PVVISKFIQEAKEIDVDAVASDGVVAAIA---ISEHVENAGVHSGDATLVTPPQDITAKT 1178
>IF2A_METJA (Q57581) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 266 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Frame = +1 Query: 61 EEAQEAGDLGRELPWQAAPRSNRFTVMAAEN---IDEKRNTDKWKGLAYDISDDQQDIT- 228 EEA E ++G L + N F M E +D+ +++WK + Y+++ + ++T Sbjct: 119 EEAWE--EVGYLLEDEFGELYNAFETMVIEGKEVLDDLEISEEWKNVLYEVAKESIELTN 176 Query: 229 -RGKGIVDSLFQAPTG 273 +G+++ AP G Sbjct: 177 VEVEGVIEMKSYAPDG 192
>Y1794_STRCO (Q9X9Z8) Hypothetical UPF0098 protein SCO1794| Length = 179 Score = 28.1 bits (61), Expect = 5.4 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 20/105 (19%) Frame = +1 Query: 52 LPREEAQEAGDLGRELPWQAAPRSNRFTVMAAENIDEKRNTDKWKGLAYDI--SDDQQDI 225 L ++ AG+ L W+ P + + + D + W + +DI S + + Sbjct: 33 LKDDQVHAAGNTSPHLRWEGFPAETKSFAVTCYDPDAPTGSGFWHWVVFDIPASVTELPV 92 Query: 226 TRGKGIVDSLFQA------------------PTGDGTHEAVLSSY 306 G G + L Q P GDG H V + Y Sbjct: 93 GAGSGAFEGLPQGAVQARNDYGSKGFGGAAPPPGDGPHRYVFTVY 137
>SEC16_YEAST (P48415) Multidomain vesicle coat protein| Length = 2195 Score = 27.7 bits (60), Expect = 7.1 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +1 Query: 46 DQLPREEAQEAGDLGRELPWQAAPRSNRFTVMAAENIDE----KRNTDKWKGLAYDISDD 213 DQ Q +GDLG LPW++ ++ T + E ++ N +K L +++SD Sbjct: 429 DQAEDLFTQSSGDLGEVLPWESTDKNADVTSKSQEKHEDLFAASGNDEK---LPWEVSDG 485 Query: 214 QQDITRGK 237 +++ GK Sbjct: 486 --EVSSGK 491
>NORM_OCEIH (Q8CUL5) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 447 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%) Frame = -3 Query: 284 WVPSPVGAWKSESTMPF----------PLVMSCWSSEISYARPFHLSVFLFSSMFSA 144 W+ S + + PF P +S W+ ++ P L++F +S+FSA Sbjct: 205 WIISGISIFMIHRVYPFHSYKVFQKILPPTLSYWADQLKIGLPIGLAIFFETSIFSA 261
>Y504_CHLTR (O84512) Protein CT_504| Length = 288 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 17 STVGAPASTPTNFLGKKLKKQVTSAVNYHGKQLQG 121 STV APASTP + KK +++ + K+ QG Sbjct: 124 STVAAPASTPVAPMSKKERRKEFKNEKWKDKKKQG 158
>GLND_BRUSU (Q8G312) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +1 Query: 121 SNRFTVMAAENIDEKRNTDKWKGLAYDISDD---QQDITRGKGIVDSLF 258 SN+FTV+ E +D + GL D+S D T G+ ++DS + Sbjct: 843 SNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
>GLND_BRUME (Q8YES3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +1 Query: 121 SNRFTVMAAENIDEKRNTDKWKGLAYDISDD---QQDITRGKGIVDSLF 258 SN+FTV+ E +D + GL D+S D T G+ ++DS + Sbjct: 843 SNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
>GLND_BRUAB (Q57FN0) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +1 Query: 121 SNRFTVMAAENIDEKRNTDKWKGLAYDISDD---QQDITRGKGIVDSLF 258 SN+FTV+ E +D + GL D+S D T G+ ++DS + Sbjct: 843 SNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
>GLND_BRUA2 (Q2YNZ1) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +1 Query: 121 SNRFTVMAAENIDEKRNTDKWKGLAYDISDD---QQDITRGKGIVDSLF 258 SN+FTV+ E +D + GL D+S D T G+ ++DS + Sbjct: 843 SNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFY 891
>CBID_BRUSU (Q8G018) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 368 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 187 GLAYDISDDQQDITRGKGIVDSLFQAPTGDG 279 G+ D DD D+T G I+ +++ AP G G Sbjct: 74 GIVKDAGDDP-DVTHGATIISTVYPAPPGTG 103
>ALMS1_HUMAN (Q8TCU4) Alstrom syndrome protein 1| Length = 4167 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/72 (27%), Positives = 33/72 (45%) Frame = -3 Query: 323 PWLTYX*ELRTASWVPSPVGAWKSESTMPFPLVMSCWSSEISYARPFHLSVFLFSSMFSA 144 PWL+ EL ++VP + S S MP P M +++ I+++ H SS+ Sbjct: 2677 PWLS---ELVEPAFVPPKEVDFHSSSQMPSPEPMKKFTTSITFSSHRHSKCISNSSVVKV 2733 Query: 143 AMTVNLLDLGAA 108 +T GA+ Sbjct: 2734 GVTEGSQCTGAS 2745
>NDST_DROME (Q9V3L1) Bifunctional heparan sulfate| N-deacetylase/N-sulfotransferase (EC 2.8.2.8) (Glucosaminyl N-deacetylase/N-sulfotransferase) (Sulfateless) [Includes: Heparan sulfate N-deacetylase (EC 3.-.-.-); Heparan sulfate N-sulfotransferase (EC 2.8 Length = 1048 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 88 GRELPWQAAPRSNRFTVMAAENIDEKRNTDKW 183 G+ LP R+ V+ EN+D+ N DKW Sbjct: 276 GKSLPVLTNLDKGRYGVIVFENLDKYLNMDKW 307
>CBID_BRUME (Q8YHU3) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 369 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 187 GLAYDISDDQQDITRGKGIVDSLFQAPTGDG 279 G+ D DD D+T G I+ +++ AP G G Sbjct: 74 GIVKDAGDDP-DVTHGATIISTVYPAPPGTG 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,493,160 Number of Sequences: 219361 Number of extensions: 781349 Number of successful extensions: 1847 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 1811 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1844 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
