ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baalp21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 654 bits (330), Expect = 0.0 Identities = 365/373 (97%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 203 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaagg 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 204 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaag-agctccaagg 262 Query: 121 tccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaag 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 263 -ccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaag 321 Query: 181 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 tggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggc 381 Query: 241 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 441 Query: 301 tcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccatgggagg 360 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 442 tcctacgagtacgtcagccaggg-cctgcggaagtacgacttcgacaacaccatgggagg 500 Query: 361 cttttacatcgct 373 ||| ||||||||| Sbjct: 501 cttctacatcgct 513
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 597 bits (301), Expect = e-167 Identities = 333/340 (97%), Gaps = 3/340 (0%) Strand = Plus / Plus Query: 34 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 93 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 94 gaactaccatggcaagcagctccaaggtccaacaggttcacagtcatggcagcggagaac 153 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaag-agctccaagg-ccaacaggttcacagtcatggcagcggagaac 5635 Query: 154 atcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgac 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5636 atcgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgac 5695 Query: 214 cagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggc 273 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5696 cagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggg 5755 Query: 274 gacggcacccacgaggccgtcctcagctcctacnagtacgtcagccagggncctgcggaa 333 |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct: 5756 cacggcacccacgaggccgtcctcagctcctacgagtacgtcagccaggg-cctgcggaa 5814 Query: 334 gtacgacttcgacaacaccatgggaggcttttacatcgct 373 |||||||||||||||||||||||||||||| ||||||||| Sbjct: 5815 gtacgacttcgacaacaccatgggaggcttctacatcgct 5854 Score = 210 bits (106), Expect = 2e-51 Identities = 160/177 (90%), Gaps = 1/177 (0%) Strand = Plus / Plus Query: 180 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 239 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 240 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 299 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 300 ctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccatgg 356 ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3059 ctcctacgagtacatcagccaggg-cctgcggaagtacgacttcgacaacaccatgg 3114 Score = 69.9 bits (35), Expect = 6e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccgg 35 ||||||||||||||||||||||||||||||||||| Sbjct: 5364 ggctgctgccttctcctccaccgtcggggctccgg 5398
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 593 bits (299), Expect = e-166 Identities = 357/373 (95%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 64 ggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttcctcgg 123 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaagg 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 124 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaag-agctccaagg 182 Query: 121 tccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaag 180 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 183 -ccaacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgacaag 241 Query: 181 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 301 Query: 241 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 300 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 302 atcgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctcagc 361 Query: 301 tcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccatgggagg 360 || ||| |||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 362 tcatacgagtacgtcagccaggga-ctcaagaagtacgacttcgacaacaccatgggagg 420 Query: 361 cttttacatcgct 373 ||| ||||||||| Sbjct: 421 cttctacatcgct 433
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 446 bits (225), Expect = e-122 Identities = 246/252 (97%), Gaps = 1/252 (0%) Strand = Plus / Plus Query: 122 ccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagt 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8 ccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagt 67 Query: 182 ggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggca 241 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68 ggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggca 127 Query: 242 tcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagct 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 tcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagct 187 Query: 302 cctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccatgggaggc 361 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctacgagtacgtcagccaggg-cctgcggaagtacgacttcgacaacaccatgggaggc 246 Query: 362 ttttacatcgct 373 || ||||||||| Sbjct: 247 ttctacatcgct 258
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 252 bits (127), Expect = 7e-64 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccaggg-cctcaagaagtacgacttcgacaacaccat 435 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 436 gggaggcttctacatcgc 453 Score = 188 bits (95), Expect = 9e-45 Identities = 133/143 (93%), Gaps = 2/143 (1%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 ||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| Sbjct: 82 ggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagcttcctcgg 141 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaagg 120 || |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| Sbjct: 142 caacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaag-agcttcaagg 200 Query: 121 tccaacaggttcacagtcatggc 143 ||||||||||||| |||||||| Sbjct: 201 -ccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 232 bits (117), Expect = 6e-58 Identities = 178/198 (89%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccaggg-cctcaagaagtacgacttcgacaacaccat 425 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 426 gggaggcttctacatcgc 443 Score = 182 bits (92), Expect = 5e-43 Identities = 132/143 (92%), Gaps = 2/143 (1%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 ||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||| Sbjct: 72 ggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagcttcctcgg 131 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaagg 120 || |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| Sbjct: 132 caacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaag-agcttcaagg 190 Query: 121 tccaacaggttcacagtcatggc 143 ||||||||||||| |||||||| Sbjct: 191 -ccaacaggttcaccgtcatggc 212
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 210 bits (106), Expect = 2e-51 Identities = 160/177 (90%), Gaps = 1/177 (0%) Strand = Plus / Plus Query: 180 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 239 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 240 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 299 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 300 ctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccatgg 356 ||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 337 ctcctacgagtacatcagccaggg-cctgcgcaagtacgacttcgacaacaccatgg 392 Score = 71.9 bits (36), Expect = 1e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||||| Sbjct: 28 ggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcctcgg 87 Query: 61 gaagaagctcaagaagcagg 80 ||||||| | |||||||||| Sbjct: 88 gaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 210 bits (106), Expect = 2e-51 Identities = 160/177 (90%), Gaps = 1/177 (0%) Strand = Plus / Plus Query: 180 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 239 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 240 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 299 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 300 ctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccatgg 356 ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct: 490 ctcctacgagtacatcagccaggg-cctgcggaagtacgacttcgacaacaccatgg 545
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 206 bits (104), Expect = 4e-50 Identities = 175/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| ||||| |||||||||| || | | ||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggt-ctcagaacgtacgacttcgacaacaccat 390 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 391 gggaggcttctacatcgc 408 Score = 147 bits (74), Expect = 3e-32 Identities = 108/118 (91%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||| || |||||||| || || |||||||||||||| || Sbjct: 37 ggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctggg 96 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaa 118 ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||| Sbjct: 97 gaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaag-agctccaa 153
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 206 bits (104), Expect = 4e-50 Identities = 175/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| ||||| |||||||||| || | | ||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggt-ctcagaacgtacgacttcgacaacaccat 382 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 383 gggaggcttctacatcgc 400 Score = 147 bits (74), Expect = 3e-32 Identities = 108/118 (91%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||| || |||||||| || || |||||||||||||| || Sbjct: 29 ggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctggg 88 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaa 118 ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||| Sbjct: 89 gaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaag-agctccaa 145
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 206 bits (104), Expect = 4e-50 Identities = 175/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| ||||| |||||||||| || | | ||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggt-ctcagaacgtacgacttcgacaacaccat 430 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 431 gggaggcttctacatcgc 448 Score = 147 bits (74), Expect = 3e-32 Identities = 108/118 (91%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||| || |||||||| || || |||||||||||||| || Sbjct: 77 ggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctggg 136 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaa 118 ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||| Sbjct: 137 gaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaag-agctccaa 193
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 206 bits (104), Expect = 4e-50 Identities = 175/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| ||||| |||||||||| || | | ||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggt-ctcagaacgtacgacttcgacaacaccat 419 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 420 gggaggcttctacatcgc 437 Score = 147 bits (74), Expect = 3e-32 Identities = 108/118 (91%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||| || |||||||| || || |||||||||||||| || Sbjct: 66 ggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctggg 125 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaa 118 ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||| Sbjct: 126 gaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaag-agctccaa 182
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 206 bits (104), Expect = 4e-50 Identities = 175/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| ||||| |||||||||| || | | ||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggt-ctcagaacgtacgacttcgacaacaccat 418 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 419 gggaggcttctacatcgc 436 Score = 147 bits (74), Expect = 3e-32 Identities = 108/118 (91%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||| || |||||||| || || |||||||||||||| || Sbjct: 65 ggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctggg 124 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaa 118 ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||| Sbjct: 125 gaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaag-agctccaa 181
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 206 bits (104), Expect = 4e-50 Identities = 175/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| ||||| |||||||||| || | | ||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggt-ctcagaacgtacgacttcgacaacaccat 202 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 203 gggaggcttctacatcgc 220
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 206 bits (104), Expect = 4e-50 Identities = 175/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| ||||| |||||||||| || | | ||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggt-ctcagaacgtacgacttcgacaacaccat 423 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 424 gggaggcttctacatcgc 441 Score = 139 bits (70), Expect = 7e-30 Identities = 107/118 (90%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||| || |||||||| || || |||||||||||||| || Sbjct: 70 ggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctggg 129 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaa 118 ||||||||| || ||||||||||| ||||| |||||||||||||||||| |||||||| Sbjct: 130 gaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaag-agctccaa 186
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 206 bits (104), Expect = 4e-50 Identities = 175/198 (88%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 295 ctcagctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccat 354 |||||||||||| ||||| |||||||||| || | | ||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggt-ctcagaacgtacgacttcgacaacaccat 417 Query: 355 gggaggcttttacatcgc 372 ||||||||| |||||||| Sbjct: 418 gggaggcttctacatcgc 435 Score = 147 bits (74), Expect = 3e-32 Identities = 108/118 (91%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||| || |||||||| || || |||||||||||||| || Sbjct: 64 ggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctggg 123 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaa 118 ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||| Sbjct: 124 gaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaag-agctccaa 180
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 170 bits (86), Expect = 2e-39 Identities = 133/149 (89%) Strand = Plus / Minus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 295 ctcagctcctacnagtacgtcagccaggg 323 |||||||||||| ||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 180 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 239 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 240 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 290 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 101 bits (51), Expect = 2e-18 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 44 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 103 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 104 ggcaagcagctccaa 118 |||||| |||||||| Sbjct: 109778 ggcaag-agctccaa 109765 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 334 gtacgacttcgacaacaccatgggaggcttttacatcgc 372 |||||||||||||||||||||||||||||| |||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgc 109397 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 1 ggctgctgccttctcctccaccgtcggggctccgg 35 |||||||||||||||||||||||| || ||||||| Sbjct: 109980 ggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 170 bits (86), Expect = 2e-39 Identities = 133/149 (89%) Strand = Plus / Minus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 295 ctcagctcctacnagtacgtcagccaggg 323 |||||||||||| ||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 180 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 239 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 240 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 290 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 101 bits (51), Expect = 2e-18 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 44 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 103 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 104 ggcaagcagctccaa 118 |||||| |||||||| Sbjct: 31655 ggcaag-agctccaa 31642 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 334 gtacgacttcgacaacaccatgggaggcttttacatcgc 372 |||||||||||||||||||||||||||||| |||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgc 31274 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 1 ggctgctgccttctcctccaccgtcggggctccgg 35 |||||||||||||||||||||||| || ||||||| Sbjct: 31857 ggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 170 bits (86), Expect = 2e-39 Identities = 133/149 (89%) Strand = Plus / Minus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 295 ctcagctcctacnagtacgtcagccaggg 323 |||||||||||| ||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 180 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 239 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 240 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 290 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 101 bits (51), Expect = 2e-18 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 44 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 103 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 104 ggcaagcagctccaa 118 |||||| |||||||| Sbjct: 28304917 ggcaag-agctccaa 28304904 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 334 gtacgacttcgacaacaccatgggaggcttttacatcgc 372 |||||||||||||||||||||||||||||| |||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgc 28304536 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 1 ggctgctgccttctcctccaccgtcggggctccgg 35 |||||||||||||||||||||||| || ||||||| Sbjct: 28305119 ggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 170 bits (86), Expect = 2e-39 Identities = 133/149 (89%) Strand = Plus / Minus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 295 ctcagctcctacnagtacgtcagccaggg 323 |||||||||||| ||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 180 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 239 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 240 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 290 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 101 bits (51), Expect = 2e-18 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 44 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 103 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 104 ggcaagcagctccaa 118 |||||| |||||||| Sbjct: 28287366 ggcaag-agctccaa 28287353 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 334 gtacgacttcgacaacaccatgggaggcttttacatcgc 372 |||||||||||||||||||||||||||||| |||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgc 28286985 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 1 ggctgctgccttctcctccaccgtcggggctccgg 35 |||||||||||||||||||||||| || ||||||| Sbjct: 28287568 ggctgctgccttctcctccaccgttggagctccgg 28287534
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 147 bits (74), Expect = 3e-32 Identities = 108/118 (91%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 1 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 60 |||||||||||||||||||||||| || |||||||| || || |||||||||||||| || Sbjct: 65 ggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctggg 124 Query: 61 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagcagctccaa 118 ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||| Sbjct: 125 gaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaag-agctccaa 181 Score = 89.7 bits (45), Expect = 6e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 235 aagggcatcgtggactcgctcttccaggc 263 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328 Score = 71.9 bits (36), Expect = 1e-09 Identities = 65/74 (87%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 299 gctcctacnagtacgtcagccagggncctgcggaagtacgacttcgacaacaccatggga 358 |||||||| ||||| |||||||||| | | | | ||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtc-tcagaacgtacgacttcgacaacaccatggga 385 Query: 359 ggcttttacatcgc 372 ||||| |||||||| Sbjct: 386 ggcttctacatcgc 399
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 123 bits (62), Expect = 4e-25 Identities = 127/149 (85%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 295 ctcagctcctacnagtacgtcagccaggg 323 |||||||||||| | ||| |||||||||| Sbjct: 333 ctcagctcctacgactacatcagccaggg 361 Score = 75.8 bits (38), Expect = 9e-11 Identities = 93/111 (83%), Gaps = 9/111 (8%) Strand = Plus / Plus Query: 8 gccttctcctccaccgtcggggctccggcttctacgccgaccaa------cttcctcggg 61 |||||||||||||||||||| |||||||| || || ||||||| |||||||||| Sbjct: 30 gccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagcttcctcggg 89 Query: 62 aagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 109 ||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 90 aagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 105 bits (53), Expect = 1e-19 Identities = 94/108 (87%) Strand = Plus / Plus Query: 211 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 270 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 271 ggcgacggcacccacgaggccgtcctcagctcctacnagtacgtcagc 318 |||||||| |||||| | ||||||| ||||||||| ||||| ||||| Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 342
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 105 bits (53), Expect = 1e-19 Identities = 94/108 (87%) Strand = Plus / Plus Query: 211 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 270 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 271 ggcgacggcacccacgaggccgtcctcagctcctacnagtacgtcagc 318 |||||||| |||||| | ||||||| ||||||||| ||||| ||||| Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 205
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 105 bits (53), Expect = 1e-19 Identities = 94/108 (87%) Strand = Plus / Plus Query: 211 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 270 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 271 ggcgacggcacccacgaggccgtcctcagctcctacnagtacgtcagc 318 |||||||| |||||| | ||||||| ||||||||| ||||| ||||| Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 235
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 101 bits (51), Expect = 2e-18 Identities = 123/149 (82%) Strand = Plus / Plus Query: 175 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 234 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 235 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 294 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 295 ctcagctcctacnagtacgtcagccaggg 323 |||||||||||| | ||| |||||||||| Sbjct: 333 ctcagctcctacgactacatcagccaggg 361 Score = 75.8 bits (38), Expect = 9e-11 Identities = 93/111 (83%), Gaps = 9/111 (8%) Strand = Plus / Plus Query: 8 gccttctcctccaccgtcggggctccggcttctacgccgaccaa------cttcctcggg 61 |||||||||||||||||||| |||||||| || || ||||||| |||||||||| Sbjct: 30 gccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagcttcctcggg 89 Query: 62 aagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 109 ||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 90 aagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 181 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 236 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 8e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 204 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 263 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 181 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 239 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 206 ccgacgaccagcaggacatcacc 228 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 248 actcgctcttccaggcgcccac 269 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 61 gaagaagctcaagaagcaggtg 82 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 catggcagcggagaacatcg 157 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 atctccgacgaccagcaggacatc 225 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gcagcggagaacatcgacga 161 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 cccacgggcgacggcacccacgag 288 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ctgccttctcctccaccgtc 25 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 catggcagcggagaacatcg 157 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 cccacgggcgacggcacccacgag 288 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ctgctgccttctcctccacc 22 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ctgctgccttctcctccacc 22 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ctgctgccttctcctccacc 22 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gaagaagctcaagaagcagg 80 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 cccacgggcgacggcacccacgag 288 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ccagagggaagggcatcgtg 246 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ccagagggaagggcatcgtg 246 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 cccacgggcgacggcacccacgag 288 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgatatctccgacgaccagc 217 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aagaagctcaagaagcaggt 81 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 cccacgggcgacggcacccacgag 288 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,615,981 Number of Sequences: 3902068 Number of extensions: 2615981 Number of successful extensions: 47368 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47056 Number of HSP's gapped (non-prelim): 296 length of query: 373 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 351 effective length of database: 17,147,199,772 effective search space: 6018667119972 effective search space used: 6018667119972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
