ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baalp18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068518.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 2e-35
2dbj|AB098063.1| Oryza sativa (japonica cultivar-group) OsSPDS2 m... 149 4e-33
3dbj|AK067301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 4e-33
4gb|AY106455.1| Zea mays PCO123401 mRNA sequence 109 3e-21
5gb|AY730048.1| Zea mays spermidine synthase (spesyn) mRNA, compl... 109 3e-21
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
7dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
8dbj|AK065153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
9gb|BT014416.1| Lycopersicon esculentum clone 133724F, mRNA sequence 60 3e-06
10gb|AY335900.1| Lycopersicon esculentum putative spermine synthas... 60 3e-06
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
12dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
13dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
14gb|DQ247922.1| Zea mays spermidine synthase 2 gene, partial cds 54 2e-04
15gb|AY646352.1| Cucumis sativus spermidine synthase mRNA, complet... 50 0.003
16gb|AF043109.1|AF043109 Pisum sativum spermidine synthase 2 (SPDS... 50 0.003
17dbj|AB006691.1| Hyoscyamus niger mRNA for spermidine synthase 2,... 44 0.16
18gb|DQ103516.1| Zea mays spermidine synthase mRNA, partial cds 42 0.62
19dbj|AB072916.2| Malus x domestica MdSPDS2a mRNA forspermidine sy... 42 0.62
20emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20... 40 2.5
21dbj|AB072915.2| Malus x domestica MdSPDS1 mRNA forspermidine syn... 40 2.5
22gb|AC154046.1| Drosophila melanogaster clone BACR29O22, complete... 38 9.7
23gb|BC053582.1| Homo sapiens solute carrier family 32 (GABA vesic... 38 9.7
24ref|XM_525324.1| PREDICTED: Pan troglodytes LOC469940 (LOC469940... 38 9.7
25ref|NM_080552.2| Homo sapiens solute carrier family 32 (GABA ves... 38 9.7
26ref|XM_591115.2| PREDICTED: Bos taurus similar to vesicular inhi... 38 9.7
27gb|AF321139.1| Nicotiana tabacum spermidine synthase mRNA, compl... 38 9.7
28ref|XM_542994.2| PREDICTED: Canis familiaris similar to vesicula... 38 9.7
29gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, comp... 38 9.7
30gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, comp... 38 9.7
31emb|AJ812075.1| Cephalanthus salicifolius partial ETS, specimen ... 38 9.7
32emb|AJ812074.1| Cephalanthus occidentalis partial ETS, specimen ... 38 9.7
33gb|AY578289.1| Mus musculus vasicular inhibitory amino acid tran... 38 9.7
34emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chr... 38 9.7
35emb|AL133519.28| Human DNA sequence from clone RP11-122O1 on chr... 38 9.7
36emb|Y08253.1|DSSS2 D.stramonium mRNA for spermidine synthase 2 38 9.7
37gb|BC036458.2| Homo sapiens solute carrier family 32 (GABA vesic... 38 9.7
38gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 9.7
39gb|BC025013.1| Mus musculus, clone IMAGE:5357287, mRNA 38 9.7
40gb|AY044836.1| Homo sapiens vesicular inhibitory amino acid tran... 38 9.7
41ref|NM_009508.1| Mus musculus solute carrier family 32 (GABA ves... 38 9.7
42gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswel... 38 9.7
43dbj|AK091079.1| Homo sapiens cDNA FLJ33760 fis, clone BRCOC20000... 38 9.7
44dbj|AK055051.1| Homo sapiens cDNA FLJ30489 fis, clone BRAWH20001... 38 9.7
45dbj|AK140468.1| Mus musculus 10 days neonate medulla oblongata c... 38 9.7
46dbj|AK163661.1| Mus musculus 10 days neonate medulla oblongata c... 38 9.7
47dbj|AK163754.1| Mus musculus adult male corpus striatum cDNA, RI... 38 9.7
48ref|NM_031782.1| Rattus norvegicus solute carrier family 32 (GAB... 38 9.7
49emb|BX510301.6| Zebrafish DNA sequence from clone CH211-215A10 i... 38 9.7
50dbj|AB062931.1| Macaca fascicularis brain cDNA clone:QccE-21148,... 38 9.7
51gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31,... 38 9.7
52gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, ... 38 9.7
53gb|BC052020.1| Mus musculus solute carrier family 32 (GABA vesic... 38 9.7
54gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49... 38 9.7
55dbj|AB080232.1| Mus musculus VGAT gene for vesicular GABA transp... 38 9.7
56dbj|AB100310.1| Petunia x hybrida spds mRNA for spermidine synth... 38 9.7
57dbj|AK114222.1| Ciona intestinalis cDNA, clone:cicl050l23, full ... 38 9.7
58gb|AF030253.1|AF030253 Rattus norvegicus vesicular GABA transpor... 38 9.7
59emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on ch... 38 9.7
60dbj|AB006692.1| Nicotiana sylvestris mRNA for spermidine synthas... 38 9.7
61emb|AJ001598.1|MMVIAAT Mus musculus mRNA for vesicular GABA and ... 38 9.7 
>dbj|AK068518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G09, full
           insert sequence
          Length = 1614

 Score =  157 bits (79), Expect = 2e-35
 Identities = 131/147 (89%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  tctgaggccaagtgccacgctactgtggtgtccgggtggttcacaggaaacccgctcgcg 103
           |||||||| || ||||| || || |||||||| ||||||||||| |||| ||||||||||
Sbjct: 263 tctgaggcaaaatgccatgccacagtggtgtcagggtggttcac-ggaaccccgctcgcg 321

                                                                       
Query: 104 ctctggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctggggaggctca 163
           |||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct: 322 ctctggtaaaacaagcaaagtgcagtacttcaacaatccaatgtggcctggagaagctca 381

                                      
Query: 164 ttcgttgaaagtagagaagattttgta 190
           |||  ||||||||||||| ||| ||||
Sbjct: 382 ttctctgaaagtagagaatattctgta 408
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>dbj|AB098063.1| Oryza sativa (japonica cultivar-group) OsSPDS2 mRNA for aminopropyl
           transferase, complete cds
          Length = 1560

 Score =  149 bits (75), Expect = 4e-33
 Identities = 130/147 (88%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  tctgaggccaagtgccacgctactgtggtgtccgggtggttcacaggaaacccgctcgcg 103
           |||||||| || ||||| || || |||||||| ||||||||||| |||| ||||||||| 
Sbjct: 241 tctgaggcaaaatgccatgccacagtggtgtcagggtggttcac-ggaaccccgctcgca 299

                                                                       
Query: 104 ctctggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctggggaggctca 163
           |||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct: 300 ctctggtaaaacaagcaaagtgcagtacttcaacaatccaatgtggcctggagaagctca 359

                                      
Query: 164 ttcgttgaaagtagagaagattttgta 190
           |||  ||||||||||||| ||| ||||
Sbjct: 360 ttctctgaaagtagagaatattctgta 386
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>dbj|AK067301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105J05, full
           insert sequence
          Length = 1593

 Score =  149 bits (75), Expect = 4e-33
 Identities = 130/147 (88%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  tctgaggccaagtgccacgctactgtggtgtccgggtggttcacaggaaacccgctcgcg 103
           |||||||| || ||||| || || |||||||| ||||||||||| |||| ||||||||| 
Sbjct: 265 tctgaggcaaaatgccatgccacagtggtgtcagggtggttcac-ggaaccccgctcgca 323

                                                                       
Query: 104 ctctggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctggggaggctca 163
           |||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct: 324 ctctggtaaaacaagcaaagtgcagtacttcaacaatccaatgtggcctggagaagctca 383

                                      
Query: 164 ttcgttgaaagtagagaagattttgta 190
           |||  ||||||||||||| ||| ||||
Sbjct: 384 ttctctgaaagtagagaatattctgta 410
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>gb|AY106455.1| Zea mays PCO123401 mRNA sequence
          Length = 714

 Score =  109 bits (55), Expect = 3e-21
 Identities = 122/143 (85%), Gaps = 1/143 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  gaggccaagtgccacgctactgtggtgtccgggtggttcacaggaaacccgctcgcgctc 106
           |||||||| ||||| | ||||||||| || ||||||||||| |||| || | ||||| | 
Sbjct: 268 gaggccaactgccatgatactgtggtttcagggtggttcac-ggaacccagatcgcgttt 326

                                                                       
Query: 107 tggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctggggaggctcattc 166
           ||||||| ||||||||| |||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 327 tggtaaaacaagcaaagtgcagtacttcaataacccgatgtggcctggagaggcccattc 386

                                  
Query: 167 gttgaaagtagagaagattttgt 189
            |||||||| |||||||| ||||
Sbjct: 387 attgaaagtggagaagatcttgt 409
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>gb|AY730048.1| Zea mays spermidine synthase (spesyn) mRNA, complete cds
          Length = 1571

 Score =  109 bits (55), Expect = 3e-21
 Identities = 122/143 (85%), Gaps = 1/143 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  gaggccaagtgccacgctactgtggtgtccgggtggttcacaggaaacccgctcgcgctc 106
           |||||||| ||||| | ||||||||| || ||||||||||| |||| || | ||||| | 
Sbjct: 204 gaggccaactgccatgatactgtggtttcagggtggttcac-ggaacccagatcgcgttt 262

                                                                       
Query: 107 tggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctggggaggctcattc 166
           ||||||| ||||||||| |||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 263 tggtaaaacaagcaaagtgcagtacttcaataacccgatgtggcctggagaggcccattc 322

                                  
Query: 167 gttgaaagtagagaagattttgt 189
            |||||||| |||||||| ||||
Sbjct: 323 attgaaagtggagaagatcttgt 345
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                               
Query: 108      ggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctgg 154
                |||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 19267798 ggtaaaacaagcaaagtgcagtacttcaacaatccaatgtggcctgg 19267844



 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 59/68 (86%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                            
Query: 44       tctgaggccaagtgccacgctactgtggtgtccgggtggttcacaggaaacccgctcgcg 103
                |||||||| || ||||| || || |||||||| ||||||||||| |||| ||||||||| 
Sbjct: 19267614 tctgaggcaaaatgccatgccacagtggtgtcagggtggttcac-ggaaccccgctcgca 19267672

                        
Query: 104      ctctggta 111
                ||||||||
Sbjct: 19267673 ctctggta 19267680
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>dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0001B01
          Length = 147585

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                             
Query: 108    ggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctgg 154
              |||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 105562 ggtaaaacaagcaaagtgcagtacttcaacaatccaatgtggcctgg 105608



 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 59/68 (86%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                          
Query: 44     tctgaggccaagtgccacgctactgtggtgtccgggtggttcacaggaaacccgctcgcg 103
              |||||||| || ||||| || || |||||||| ||||||||||| |||| ||||||||| 
Sbjct: 105378 tctgaggcaaaatgccatgccacagtggtgtcagggtggttcac-ggaaccccgctcgca 105436

                      
Query: 104    ctctggta 111
              ||||||||
Sbjct: 105437 ctctggta 105444
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>dbj|AK065153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B15, full
           insert sequence
          Length = 1293

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 122/149 (81%), Gaps = 2/149 (1%)
 Strand = Plus / Plus

                                                                       
Query: 42  aatctgaggccaagtgccacgctactgtggtgtccgggtggttcacaggaaacccgctcg 101
           |||| ||||||||||||||||| || ||||||||||| ||||||||  ||  ||||||||
Sbjct: 291 aatccgaggccaagtgccacgccaccgtggtgtccggatggttcac-cgagccccgctcg 349

                                                                       
Query: 102 cgctctggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctggggaggct 161
           |||   |||||| | ||| ||| |||||| | ||| || || |||||||| || ||||| 
Sbjct: 350 cgcggcggtaaaacgagc-aagtgcagtattacaataacccgatgtggccaggagaggcc 408

                                        
Query: 162 cattcgttgaaagtagagaagattttgta 190
           |||||  ||||||| |||||||| |||||
Sbjct: 409 cattcactgaaagttgagaagatcttgta 437
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>gb|BT014416.1| Lycopersicon esculentum clone 133724F, mRNA sequence
          Length = 1353

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 128 gtacttcaacaatccaatgtggcctggggaggctcattcgttgaaagtagagaagatttt 187
           |||||||||||||||||||||||| || || || |||||  |||||||||| ||| ||||
Sbjct: 517 gtacttcaacaatccaatgtggccaggagaagcacattccctgaaagtagaaaaggtttt 576

             
Query: 188 gt 189
           ||
Sbjct: 577 gt 578
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>gb|AY335900.1| Lycopersicon esculentum putative spermine synthase (SPM1) mRNA,
           complete cds
          Length = 1162

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 128 gtacttcaacaatccaatgtggcctggggaggctcattcgttgaaagtagagaagatttt 187
           |||||||||||||||||||||||| || || || |||||  |||||||||| ||| ||||
Sbjct: 202 gtacttcaacaatccaatgtggccaggagaagcacattccctgaaagtagaaaaggtttt 261

             
Query: 188 gt 189
           ||
Sbjct: 262 gt 263
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                             
Query: 42      aatctgaggccaagtgccacgctactgtggtgtccgggtggttcac 87
               |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 8729279 aatccgaggccaagtgccacgccaccgtggtgtccggatggttcac 8729234
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>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0463G12
          Length = 145403

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 42     aatctgaggccaagtgccacgctactgtggtgtccgggtggttcac 87
              |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 136326 aatccgaggccaagtgccacgccaccgtggtgtccggatggttcac 136281
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>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0052K15
          Length = 156250

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 42    aatctgaggccaagtgccacgctactgtggtgtccgggtggttcac 87
             |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 28358 aatccgaggccaagtgccacgccaccgtggtgtccggatggttcac 28313
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>gb|DQ247922.1| Zea mays spermidine synthase 2 gene, partial cds
          Length = 892

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 108 ggtaaaccaagcaaagcgcagtacttcaacaatccaatgtggcctgg 154
           |||||| ||||||||| |||||||||||| || || |||||||||||
Sbjct: 306 ggtaaaacaagcaaagtgcagtacttcaataacccgatgtggcctgg 352



 Score = 42.1 bits (21), Expect = 0.62
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 47  gaggccaagtgccacgctactgtggtgtccgggtggttcac 87
           |||||||| ||||| | ||||||||| || |||||||||||
Sbjct: 98  gaggccaactgccatgatactgtggtttcagggtggttcac 138
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>gb|AY646352.1| Cucumis sativus spermidine synthase mRNA, complete cds
          Length = 1398

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 141 ccaatgtggcctggggaggctcattcgttgaaagtagagaagattttgt 189
           |||||||||||||| |||||||| || ||||| || |||||| ||||||
Sbjct: 183 ccaatgtggcctggagaggctcactccttgaaggtggagaaggttttgt 231
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>gb|AF043109.1|AF043109 Pisum sativum spermidine synthase 2 (SPDSYN2) mRNA, complete cds
          Length = 1279

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 141 ccaatgtggcctggggaggctcattcgttgaaagtagagaagattttgt 189
           |||||||||||||| || |||||||| |||||  |||| ||||||||||
Sbjct: 225 ccaatgtggcctggagaagctcattctttgaagatagaaaagattttgt 273
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>dbj|AB006691.1| Hyoscyamus niger mRNA for spermidine synthase 2, complete cds
          Length = 1263

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 147 tggcctggggaggctcattcgttgaaagtagagaagat 184
           ||||||||||| || || ||||||||||| ||||||||
Sbjct: 162 tggcctggggaagcacactcgttgaaagttgagaagat 199
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>gb|DQ103516.1| Zea mays spermidine synthase mRNA, partial cds
          Length = 329

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 47  gaggccaagtgccacgctactgtggtgtccgggtggttcac 87
           |||||||| ||||| | ||||||||| || |||||||||||
Sbjct: 98  gaggccaactgccatgatactgtggtttcagggtggttcac 138
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>dbj|AB072916.2| Malus x domestica MdSPDS2a mRNA forspermidine synthase, complete
           cds
          Length = 1359

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 141 ccaatgtggcctggggaggctcattcgttgaaagtagagaagattttgt 189
           ||||||||||| || ||||| || || |||||  |||||||||||||||
Sbjct: 260 ccaatgtggccaggagaggcacactccttgaagatagagaagattttgt 308
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>emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20 on chromosome 3,
             complete sequence
          Length = 116350

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   ttcaacaatccaatgtggcc 151
             ||||||||||||||||||||
Sbjct: 38422 ttcaacaatccaatgtggcc 38441
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>dbj|AB072915.2| Malus x domestica MdSPDS1 mRNA forspermidine synthase, complete cds
          Length = 1407

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 142 caatgtggcctggggaggctcattcgttgaaagtagagaagattttgt 189
           |||||||||| || ||||| || || |||||  |||||||||||||||
Sbjct: 304 caatgtggccaggagaggcacactccttgaagatagagaagattttgt 351
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>gb|AC154046.1| Drosophila melanogaster clone BACR29O22, complete sequence
          Length = 177480

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    ccaagcaaagcgcagtact 132
              |||||||||||||||||||
Sbjct: 142001 ccaagcaaagcgcagtact 142019
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>gb|BC053582.1| Homo sapiens solute carrier family 32 (GABA vesicular transporter),
            member 1, mRNA (cDNA clone MGC:61677 IMAGE:5180816),
            complete cds
          Length = 2519

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1619 ggcgcaagctgctgtggca 1637
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>ref|XM_525324.1| PREDICTED: Pan troglodytes LOC469940 (LOC469940), mRNA
          Length = 2181

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 2048 ggcgcaagctgctgtggca 2066
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>ref|NM_080552.2| Homo sapiens solute carrier family 32 (GABA vesicular transporter),
            member 1 (SLC32A1), mRNA
          Length = 2581

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1708 ggcgcaagctgctgtggca 1726
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>ref|XM_591115.2| PREDICTED: Bos taurus similar to vesicular inhibitory amino acid
            transporter (LOC513439), mRNA
          Length = 1710

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1532 ggcgcaagctgctgtggca 1550
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>gb|AF321139.1| Nicotiana tabacum spermidine synthase mRNA, complete cds
          Length = 1272

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 147 tggcctggggaggctcattcgttgaaagtagagaagattttgt 189
           ||||||||||| || || |||||||| || |||||||| ||||
Sbjct: 130 tggcctggggaagcacactcgttgaaggttgagaagatattgt 172
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>ref|XM_542994.2| PREDICTED: Canis familiaris similar to vesicular inhibitory amino
            acid transporter (LOC485870), mRNA
          Length = 2465

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1617 ggcgcaagctgctgtggca 1635
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>gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, complete sequence
          Length = 230349

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 165   tcgttgaaagtagagaaga 183
             |||||||||||||||||||
Sbjct: 32903 tcgttgaaagtagagaaga 32885
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>gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, complete sequence
          Length = 154447

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 165   tcgttgaaagtagagaaga 183
             |||||||||||||||||||
Sbjct: 76181 tcgttgaaagtagagaaga 76163
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>emb|AJ812075.1| Cephalanthus salicifolius partial ETS, specimen voucher Brant 3982
           (MO)
          Length = 418

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 85  cacaggaaacccgctcgcg 103
           |||||||||||||||||||
Sbjct: 321 cacaggaaacccgctcgcg 339
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>emb|AJ812074.1| Cephalanthus occidentalis partial ETS, specimen voucher Forbes s.n.
           (S)
          Length = 419

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 85  cacaggaaacccgctcgcg 103
           |||||||||||||||||||
Sbjct: 322 cacaggaaacccgctcgcg 340
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>gb|AY578289.1| Mus musculus vasicular inhibitory amino acid transporter 10D (Viaat)
            mRNA, complete cds
          Length = 2819

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1929 ggcgcaagctgctgtggca 1947
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>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the 5'
              end of the CASQ2 gene for calsequestrin 2 (cardiac muscle),
              the NHLH2 gene for nescient helix loop helix 2, a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene and two CpG islands, complete sequence
          Length = 164655

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 171    aaagtagagaagattttgt 189
              |||||||||||||||||||
Sbjct: 162423 aaagtagagaagattttgt 162441
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>emb|AL133519.28| Human DNA sequence from clone RP11-122O1 on chromosome 20 Contains the
             VIAAT gene for vesicular inhibitory amino acid
             transporter, the ACTR5 gene for ARP5 actin-related protein
             5 homolog (yeast) and three CpG islands, complete sequence
          Length = 96299

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    ggcgcaagctgctgtggca 39
             |||||||||||||||||||
Sbjct: 46305 ggcgcaagctgctgtggca 46323
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>emb|Y08253.1|DSSS2 D.stramonium mRNA for spermidine synthase 2
          Length = 1217

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 147 tggcctggggaggctcattcgttgaaagtagagaagattttgt 189
           ||||||||||| || || |||||||| || |||||||| ||||
Sbjct: 153 tggcctggggaagcacactcgttgaaggttgagaagatattgt 195
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>gb|BC036458.2| Homo sapiens solute carrier family 32 (GABA vesicular transporter),
            member 1, mRNA (cDNA clone IMAGE:4813726), partial cds
          Length = 2174

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1295 ggcgcaagctgctgtggca 1313
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 123     gcgcagtacttcaacaatc 141
               |||||||||||||||||||
Sbjct: 1662606 gcgcagtacttcaacaatc 1662588
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>gb|BC025013.1| Mus musculus, clone IMAGE:5357287, mRNA
          Length = 1730

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  ggcgcaagctgctgtggca 39
           |||||||||||||||||||
Sbjct: 890 ggcgcaagctgctgtggca 872
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>gb|AY044836.1| Homo sapiens vesicular inhibitory amino acid transporter mRNA,
            complete cds
          Length = 1592

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1450 ggcgcaagctgctgtggca 1468
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>ref|NM_009508.1| Mus musculus solute carrier family 32 (GABA vesicular transporter),
            member 1 (Slc32a1), mRNA
          Length = 1889

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1486 ggcgcaagctgctgtggca 1504
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>gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167638

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   ccaagcaaagcgcagtact 132
             |||||||||||||||||||
Sbjct: 89755 ccaagcaaagcgcagtact 89737
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>dbj|AK091079.1| Homo sapiens cDNA FLJ33760 fis, clone BRCOC2000004, highly similar to
            Rattus norvegicus vesicular GABA transporter (VGAT) mRNA
          Length = 1989

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1192 ggcgcaagctgctgtggca 1210
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>dbj|AK055051.1| Homo sapiens cDNA FLJ30489 fis, clone BRAWH2000142, highly similar to
            Rattus norvegicus vesicular GABA transporter (VGAT) mRNA
          Length = 2550

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1684 ggcgcaagctgctgtggca 1702
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>dbj|AK140468.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
            full-length enriched library, clone:B830050O15
            product:vesicular inhibitory amino acid transporter, full
            insert sequence
          Length = 2583

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1690 ggcgcaagctgctgtggca 1708
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>dbj|AK163661.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
            full-length enriched library, clone:B830035K21
            product:vesicular inhibitory amino acid transporter, full
            insert sequence
          Length = 2481

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1679 ggcgcaagctgctgtggca 1697
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>dbj|AK163754.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
            enriched library, clone:C030016J11 product:vesicular
            inhibitory amino acid transporter, full insert sequence
          Length = 2581

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1705 ggcgcaagctgctgtggca 1723
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>ref|NM_031782.1| Rattus norvegicus solute carrier family 32 (GABA vesicular
            transporter), member 1 (Slc32a1), mRNA
          Length = 2392

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1531 ggcgcaagctgctgtggca 1549
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>emb|BX510301.6| Zebrafish DNA sequence from clone CH211-215A10 in linkage group 19,
              complete sequence
          Length = 209585

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 170    gaaagtagagaagattttg 188
              |||||||||||||||||||
Sbjct: 159585 gaaagtagagaagattttg 159567
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>dbj|AB062931.1| Macaca fascicularis brain cDNA clone:QccE-21148, similar to human
            solute carrier family 32 member 1(SLC32A1), mRNA,
            NM_080552.1
          Length = 2756

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1880 ggcgcaagctgctgtggca 1898
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>gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31, complete sequence
          Length = 160367

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 165    tcgttgaaagtagagaaga 183
              |||||||||||||||||||
Sbjct: 129267 tcgttgaaagtagagaaga 129285
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>gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, complete sequence
          Length = 174768

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 165    tcgttgaaagtagagaaga 183
              |||||||||||||||||||
Sbjct: 126453 tcgttgaaagtagagaaga 126471
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>gb|BC052020.1| Mus musculus solute carrier family 32 (GABA vesicular transporter),
            member 1, mRNA (cDNA clone MGC:62361 IMAGE:5686843),
            complete cds
          Length = 2814

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1920 ggcgcaagctgctgtggca 1938
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>gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49 of 83 of the
            complete sequence
          Length = 350428

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 114  ccaagcaaagcgcagtact 132
            |||||||||||||||||||
Sbjct: 3411 ccaagcaaagcgcagtact 3393
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>dbj|AB080232.1| Mus musculus VGAT gene for vesicular GABA transporter a form,
            vesicular GABA transporter b form, complete cds
          Length = 6668

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 5793 ggcgcaagctgctgtggca 5811
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>dbj|AB100310.1| Petunia x hybrida spds mRNA for spermidine synthase, complete cds
          Length = 1249

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 147 tggcctggggaggctcattcgttgaaagtagagaagattttgt 189
           ||||||||||| || || || ||||| || |||||||||||||
Sbjct: 178 tggcctggggaagcacactcattgaaggtggagaagattttgt 220
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>dbj|AK114222.1| Ciona intestinalis cDNA, clone:cicl050l23, full insert sequence
          Length = 1808

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 103  gctctggtaaaccaagcaaagcg 125
            ||||| |||||||||||||||||
Sbjct: 1202 gctcttgtaaaccaagcaaagcg 1224
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>gb|AF030253.1|AF030253 Rattus norvegicus vesicular GABA transporter (VGAT) mRNA, complete
            cds
          Length = 2392

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1531 ggcgcaagctgctgtggca 1549
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>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
              sequence
          Length = 196078

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     ggcgcaagctgctgtggca 39
              |||||||||||||||||||
Sbjct: 128211 ggcgcaagctgctgtggca 128229
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>dbj|AB006692.1| Nicotiana sylvestris mRNA for spermidine synthase, complete cds
          Length = 1168

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 147 tggcctggggaggctcattcgttgaaagtagagaagattttgt 189
           ||||||||||| || || |||||||| || |||||||| ||||
Sbjct: 121 tggcctggggaagcacactcgttgaaggttgagaagatattgt 163
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>emb|AJ001598.1|MMVIAAT Mus musculus mRNA for vesicular GABA and glycine transporter
          Length = 1889

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ggcgcaagctgctgtggca 39
            |||||||||||||||||||
Sbjct: 1486 ggcgcaagctgctgtggca 1504


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,424,154
Number of Sequences: 3902068
Number of extensions: 1424154
Number of successful extensions: 85232
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85076
Number of HSP's gapped (non-prelim): 151
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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